Wall clock time and date at job start Tue Mar 31 2020 07:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46760 * 2 1 4 4 C 1.52998 * 109.46829 * 119.99843 * 2 1 3 5 5 C 1.53000 * 109.46794 * 175.00437 * 4 2 1 6 6 N 1.46498 * 109.46935 * 180.02562 * 5 4 2 7 7 C 1.46504 * 120.00095 * 272.04449 * 6 5 4 8 8 C 1.50698 * 109.46793 * 277.70422 * 7 6 5 9 9 H 1.08003 * 120.00615 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99886 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00162 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00068 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47186 * 89.99976 * 12 10 8 14 14 H 1.48501 * 109.47514 * 209.99901 * 12 10 8 15 15 H 1.48505 * 109.47062 * 330.00359 * 12 10 8 16 16 C 1.34779 * 120.00281 * 92.04653 * 6 5 4 17 17 O 1.21541 * 119.99702 * 5.88109 * 16 6 5 18 18 C 1.47978 * 120.00118 * 185.88476 * 16 6 5 19 19 C 1.39917 * 120.91246 * 150.80589 * 18 16 6 20 20 C 1.38017 * 119.00861 * 180.02562 * 19 18 16 21 21 N 1.31984 * 120.89031 * 0.02592 * 20 19 18 22 22 O 1.41604 * 118.98835 * 179.97438 * 21 20 19 23 23 C 1.31994 * 122.02645 * 0.22960 * 21 20 19 24 24 C 1.38007 * 120.88899 * 359.49445 * 23 21 20 25 25 H 1.08998 * 109.47467 * 300.00401 * 1 2 3 26 26 H 1.09004 * 109.47193 * 60.00459 * 1 2 3 27 27 H 1.09002 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46659 * 240.00041 * 2 1 3 29 29 H 1.08992 * 109.47318 * 60.00273 * 3 2 1 30 30 H 1.09000 * 109.46446 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47058 * 299.99196 * 3 2 1 32 32 H 1.08994 * 109.47462 * 55.00204 * 4 2 1 33 33 H 1.09003 * 109.47174 * 294.99711 * 4 2 1 34 34 H 1.08994 * 109.47306 * 59.99672 * 5 4 2 35 35 H 1.09003 * 109.46667 * 299.99584 * 5 4 2 36 36 H 1.08996 * 109.46668 * 37.69963 * 7 6 5 37 37 H 1.08994 * 109.47280 * 157.70452 * 7 6 5 38 38 H 0.96999 * 120.00166 * 180.02562 * 11 10 8 39 39 H 1.07995 * 120.49579 * 0.02562 * 19 18 16 40 40 H 1.08002 * 119.55196 * 180.02562 * 20 19 18 41 41 H 1.08006 * 119.55696 * 179.74248 * 23 21 20 42 42 H 1.07999 * 120.49648 * 180.23470 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8309 1.1880 6 7 4.0530 -1.5220 2.3839 7 6 4.3587 -0.7597 3.5971 8 6 5.7389 -0.1656 3.4825 9 1 6.3296 -0.3389 2.5950 10 6 6.2478 0.5992 4.5106 11 7 7.4521 1.1181 4.4104 12 14 5.2261 0.8996 6.0453 13 1 5.4983 -0.1703 7.0384 14 1 5.5835 2.2181 6.6277 15 1 3.7843 0.8899 5.6898 16 6 4.2210 -2.8592 2.3682 17 8 4.0707 -3.4784 1.3331 18 6 4.5883 -3.5735 3.6110 19 6 4.2002 -4.9017 3.8182 20 6 4.5638 -5.5299 4.9921 21 7 5.2666 -4.8946 5.9110 22 8 5.6173 -5.5777 7.1008 23 6 5.6485 -3.6405 5.7573 24 6 5.3328 -2.9391 4.6114 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1299 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6054 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.9993 0.1676 1.1421 35 1 3.8531 -1.3939 0.3003 36 1 3.6279 0.0399 3.7174 37 1 4.3188 -1.4217 4.4620 38 1 7.8102 1.6558 5.1339 39 1 3.6247 -5.4275 3.0708 40 1 4.2692 -6.5551 5.1610 41 1 6.2192 -3.1579 6.5371 42 1 5.6518 -1.9144 4.4907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265207206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:05 Heat of formation + Delta-G solvation = 14.390694 kcal Electronic energy + Delta-G solvation = -23918.409598 eV Core-core repulsion = 20480.451753 eV Total energy + Delta-G solvation = -3437.957844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -42.60798 -40.79378 -37.96847 -36.93759 -35.48625 -34.63665 -33.03392 -31.62254 -30.67957 -29.49627 -27.96237 -26.26566 -25.46371 -24.60657 -23.93998 -21.03670 -20.77152 -19.13554 -18.87728 -18.73403 -18.12045 -17.10239 -16.70703 -16.58313 -16.34037 -16.09613 -15.72963 -15.44894 -15.15233 -14.71533 -14.65442 -14.22945 -13.99523 -13.72923 -13.44450 -13.21094 -13.00208 -12.74384 -12.67389 -12.46353 -12.21286 -12.13405 -12.00904 -11.81071 -11.65607 -11.53165 -11.38635 -11.05596 -10.92137 -10.77621 -10.60344 -10.01659 -9.55765 -8.38550 -6.48963 -0.87260 -0.42327 1.36586 1.42336 1.44743 1.46051 1.47954 1.95456 2.22276 2.26875 2.93455 3.13453 3.41623 3.47420 3.58938 3.83792 3.94489 3.99051 4.08973 4.23094 4.38898 4.47184 4.51317 4.57573 4.71530 4.73223 4.77035 4.84757 4.86715 4.89002 4.96864 5.06973 5.11834 5.17255 5.29753 5.36171 5.50618 5.53909 5.56157 5.69033 5.82120 6.05322 6.42453 6.62744 6.97541 7.17517 8.75615 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011507 B = 0.006330 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.684023 B = 4422.037022 C = 6167.227781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.118 4.118 5 C 0.114 3.886 6 N -0.578 5.578 7 C 0.186 3.814 8 C -0.547 4.547 9 H 0.043 0.957 10 C 0.040 3.960 11 N -0.922 5.922 12 Si 0.907 3.093 13 H -0.252 1.252 14 H -0.284 1.284 15 H -0.234 1.234 16 C 0.557 3.443 17 O -0.565 6.565 18 C -0.092 4.092 19 C -0.050 4.050 20 C 0.074 3.926 21 N -0.125 5.125 22 O -0.612 6.612 23 C 0.061 3.939 24 C -0.109 4.109 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.273 0.727 39 H 0.204 0.796 40 H 0.217 0.783 41 H 0.186 0.814 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 -2.411 -6.028 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.157 4.157 5 C -0.008 4.008 6 N -0.306 5.306 7 C 0.064 3.936 8 C -0.585 4.585 9 H 0.062 0.938 10 C -0.163 4.163 11 N -0.559 5.559 12 Si 0.729 3.271 13 H -0.176 1.176 14 H -0.210 1.210 15 H -0.157 1.157 16 C 0.345 3.655 17 O -0.446 6.446 18 C -0.103 4.103 19 C -0.069 4.069 20 C -0.072 4.072 21 N 0.194 4.806 22 O -0.666 6.666 23 C -0.084 4.084 24 C -0.127 4.127 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.221 0.779 40 H 0.233 0.767 41 H 0.203 0.797 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.575 -2.781 -6.107 15.143 hybrid contribution 0.582 0.550 0.995 1.278 sum -12.992 -2.230 -5.112 14.139 Atomic orbital electron populations 1.21793 0.93972 1.01908 1.02229 1.21031 0.96626 0.96186 0.97131 1.21909 1.00894 0.95800 1.02168 1.21920 0.93816 1.00783 0.99173 1.21629 0.94942 0.97510 0.86706 1.47871 1.61899 1.05642 1.15208 1.20525 0.95680 0.93026 0.84328 1.21345 1.00194 1.32494 1.04425 0.93826 1.25626 0.95431 0.93974 1.01282 1.69997 1.17729 1.33584 1.34574 0.86311 0.81366 0.79269 0.80166 1.17577 1.20983 1.15723 1.18079 0.77460 0.82522 0.87466 1.90727 1.53907 1.67394 1.32606 1.20702 0.98755 0.95834 0.94980 1.22177 0.96738 0.91935 0.96014 1.23125 0.94121 1.02185 0.87763 1.43384 1.17564 1.07169 1.12437 1.97598 1.86343 1.69449 1.13214 1.22827 1.00180 0.84634 1.00753 1.23882 0.94059 1.04615 0.90149 0.92616 0.91652 0.92632 0.91098 0.92699 0.93296 0.91596 0.92181 0.91690 0.90134 0.90927 0.93228 0.91803 0.91747 0.77907 0.76659 0.79669 0.77537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.19 71.98 0.66 -1.70 16 2 C -0.09 -1.84 2.92 -10.79 -0.03 -1.87 16 3 C -0.15 -3.04 8.95 71.98 0.64 -2.39 16 4 C -0.12 -2.91 5.01 30.59 0.15 -2.76 16 5 C 0.11 3.49 5.24 86.38 0.45 3.95 16 6 N -0.58 -19.88 2.46 -829.42 -2.04 -21.92 16 7 C 0.19 6.80 3.73 85.63 0.32 7.12 16 8 C -0.55 -25.10 8.06 25.60 0.21 -24.89 16 9 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 10 C 0.04 1.88 5.32 84.65 0.45 2.33 16 11 N -0.92 -49.27 13.96 21.45 0.30 -48.97 16 12 Si 0.91 34.83 27.32 68.60 1.87 36.70 16 13 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 14 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 15 H -0.23 -8.01 6.54 99.48 0.65 -7.36 16 16 C 0.56 18.93 7.50 86.83 0.65 19.59 16 17 O -0.57 -20.78 16.30 -3.85 -0.06 -20.84 16 18 C -0.09 -2.75 5.60 -19.88 -0.11 -2.86 16 19 C -0.05 -1.13 9.70 22.62 0.22 -0.91 16 20 C 0.07 1.84 10.67 84.62 0.90 2.74 16 21 N -0.13 -4.36 3.58 -195.98 -0.70 -5.06 16 22 O -0.61 -28.57 20.04 -38.79 -0.78 -29.35 16 23 C 0.06 2.01 10.67 84.61 0.90 2.91 16 24 C -0.11 -3.56 7.60 22.62 0.17 -3.39 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.11 6.57 -2.39 -0.02 1.09 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 2.58 6.51 -2.39 -0.02 2.57 16 35 H 0.07 2.31 7.29 -2.39 -0.02 2.30 16 36 H 0.05 1.75 7.18 -2.39 -0.02 1.73 16 37 H 0.06 2.21 3.53 -2.39 -0.01 2.20 16 38 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 39 H 0.20 3.24 7.98 -2.91 -0.02 3.22 16 40 H 0.22 3.85 8.06 -2.91 -0.02 3.82 16 41 H 0.19 5.89 8.06 -2.91 -0.02 5.87 16 42 H 0.21 7.71 2.94 -2.91 -0.01 7.70 16 Total: -1.00 -67.94 344.20 5.15 -62.80 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.96 Total: 28.78 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.59 Total: -2.13 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.44 Total: -75.95 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -0.84 Total: -50.19 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 1.87 Total: 36.70 kcal Total: -67.94 5.15 -62.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265207206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.186 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds