Wall clock time and date at job start Tue Mar 31 2020 07:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47119 * 2 1 4 4 C 1.53009 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46804 * 305.00347 * 4 3 2 6 6 O 1.42893 * 109.46972 * 64.99938 * 4 3 2 7 7 C 1.52998 * 109.47195 * 185.00354 * 4 3 2 8 8 N 1.46493 * 109.47044 * 180.02562 * 7 4 3 9 9 C 1.34783 * 120.00019 * 179.97438 * 8 7 4 10 10 O 1.21584 * 119.99826 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00025 * 179.97438 * 9 8 7 12 12 C 1.39239 * 119.99572 * 185.17428 * 11 9 8 13 13 C 1.39484 * 119.83295 * 144.26606 * 12 11 9 14 14 C 1.36371 * 120.17148 * 180.21012 * 13 12 11 15 15 C 1.40870 * 119.82600 * 359.51685 * 14 13 12 16 16 C 1.41158 * 120.16587 * 180.27510 * 15 14 13 17 17 H 1.08004 * 119.99601 * 335.06786 * 16 15 14 18 18 C 1.39890 * 120.00148 * 155.06800 * 16 15 14 19 19 N 1.30877 * 120.00205 * 341.98606 * 18 16 15 20 20 Si 1.86805 * 120.00038 * 161.98909 * 18 16 15 21 21 H 1.48503 * 109.47120 * 94.97860 * 20 18 16 22 22 H 1.48497 * 109.47128 * 214.97933 * 20 18 16 23 23 H 1.48501 * 109.46930 * 334.98443 * 20 18 16 24 24 C 1.40868 * 119.67263 * 0.25862 * 15 14 13 25 25 C 1.36371 * 119.83111 * 359.97438 * 24 15 14 26 26 H 1.09005 * 109.47488 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.47078 * 300.00136 * 1 2 3 28 28 H 1.09005 * 109.47326 * 59.99770 * 1 2 3 29 29 H 1.09000 * 109.47106 * 239.99633 * 2 1 3 30 30 H 1.09005 * 109.47326 * 120.00230 * 2 1 3 31 31 H 1.09005 * 109.46984 * 60.00394 * 3 2 1 32 32 H 1.08997 * 109.47463 * 299.99751 * 3 2 1 33 33 H 0.96708 * 113.99709 * 60.00128 * 6 4 3 34 34 H 1.09002 * 109.46997 * 59.99794 * 7 4 3 35 35 H 1.09004 * 109.46775 * 299.99979 * 7 4 3 36 36 H 0.96996 * 120.00086 * 359.97438 * 8 7 4 37 37 H 0.96998 * 120.00068 * 5.17351 * 11 9 8 38 38 H 1.08004 * 119.91431 * 0.02562 * 13 12 11 39 39 H 1.07999 * 120.08845 * 179.79388 * 14 13 12 40 40 H 0.96998 * 120.00489 * 180.02562 * 19 18 16 41 41 H 1.08007 * 120.08363 * 180.02562 * 24 15 14 42 42 H 1.08000 * 119.91774 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 8 4.0468 0.8729 -1.2201 7 6 4.0800 2.8794 0.1265 8 7 5.5450 2.8794 0.1265 9 6 6.2189 4.0423 0.2277 10 8 5.6109 5.0913 0.3186 11 7 7.5666 4.0422 0.2283 12 6 8.2627 5.2293 0.4408 13 6 9.4600 5.2130 1.1563 14 6 10.1452 6.3721 1.3722 15 6 9.6461 7.5866 0.8618 16 6 10.3524 8.7897 1.0760 17 1 11.0164 8.8826 1.9228 18 6 10.1925 9.8618 0.1917 19 7 9.6888 9.6584 -0.9990 20 14 10.6978 11.5838 0.7103 21 1 12.0779 11.8586 0.2358 22 1 9.7638 12.5737 0.1163 23 1 10.6536 11.6878 2.1910 24 6 8.4386 7.5943 0.1362 25 6 7.7622 6.4278 -0.0676 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.7618 1.3473 -2.0131 34 1 3.7163 3.3138 1.0576 35 1 3.7170 3.4688 -0.7156 36 1 6.0299 2.0426 0.0536 37 1 8.0517 3.2153 0.0806 38 1 9.8438 4.2804 1.5428 39 1 11.0704 6.3585 1.9292 40 1 9.5782 10.4016 -1.6124 41 1 8.0501 8.5215 -0.2585 42 1 6.8361 6.4322 -0.6233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265391088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:54 Heat of formation + Delta-G solvation = -76.736994 kcal Electronic energy + Delta-G solvation = -22336.368009 eV Core-core repulsion = 18894.458572 eV Total energy + Delta-G solvation = -3441.909437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.92342 -38.48535 -37.25147 -34.59717 -34.43487 -34.00562 -32.85720 -30.22398 -29.40062 -28.78274 -26.36275 -24.62047 -22.33983 -21.71209 -21.31940 -20.95439 -19.90304 -17.93170 -17.28463 -17.04672 -16.59590 -16.12814 -15.28860 -15.11507 -14.73456 -14.52681 -14.34979 -13.91531 -13.78336 -13.49521 -13.13716 -12.68902 -12.56045 -12.19877 -12.10528 -11.99662 -11.78840 -11.63878 -11.29014 -11.10971 -11.07760 -11.02947 -11.00719 -10.63714 -10.28547 -9.97847 -9.65678 -9.42422 -9.05968 -8.87307 -8.81571 -7.45409 -6.93713 -6.68179 -4.23904 2.72584 3.03774 3.10536 3.12479 3.15997 3.22291 3.75479 3.97374 4.07553 4.31358 4.54658 4.61502 4.68502 4.78141 4.90735 4.92291 5.19682 5.27541 5.46442 5.49557 5.61594 5.69088 5.74072 5.77194 5.93019 5.97384 6.20825 6.45071 6.62237 6.89282 6.91678 7.10812 7.16658 7.30592 7.35820 7.41737 7.68428 7.92332 8.06966 8.12081 8.32729 8.56164 8.69403 8.94223 8.98576 9.18224 10.23371 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038649 B = 0.002459 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.288296 B =11382.990642 C =11775.024569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.096 3.904 5 H 0.104 0.896 6 O -0.559 6.559 7 C 0.109 3.891 8 N -0.749 5.749 9 C 0.694 3.306 10 O -0.580 6.580 11 N -0.666 5.666 12 C 0.011 3.989 13 C -0.107 4.107 14 C -0.216 4.216 15 C 0.104 3.896 16 C -0.460 4.460 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.792 5.792 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.156 4.156 25 C -0.086 4.086 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.377 0.623 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.390 0.610 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.280 0.720 41 H 0.119 0.881 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 -15.855 -0.332 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.188 4.188 4 C 0.036 3.964 5 H 0.122 0.878 6 O -0.364 6.364 7 C -0.016 4.016 8 N -0.406 5.406 9 C 0.394 3.606 10 O -0.457 6.457 11 N -0.312 5.312 12 C -0.082 4.082 13 C -0.127 4.127 14 C -0.236 4.236 15 C 0.101 3.899 16 C -0.489 4.489 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.417 5.417 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.176 4.176 25 C -0.106 4.106 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.225 0.775 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.230 0.770 37 H 0.223 0.777 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.892 -15.180 -0.046 19.916 hybrid contribution 0.406 0.418 -0.307 0.658 sum -12.486 -14.762 -0.353 19.338 Atomic orbital electron populations 1.21792 0.95896 1.01615 1.01820 1.21448 0.95591 0.96123 1.02602 1.22253 0.95041 0.98075 1.03427 1.22225 0.93133 0.92882 0.88139 0.87813 1.86565 1.77104 1.57089 1.15691 1.21821 0.80128 0.96744 1.02932 1.44965 1.06381 1.07980 1.81287 1.16037 0.82160 0.83846 0.78534 1.90909 1.67763 1.30052 1.56980 1.42055 1.03821 1.10612 1.74717 1.16985 0.96763 0.84840 1.09569 1.20019 0.95827 0.97237 0.99632 1.20508 1.00935 0.92203 1.09925 1.17665 0.90655 0.91922 0.89616 1.19519 1.23236 0.96638 1.09539 0.90456 1.25916 0.93342 1.01165 0.93877 1.69855 1.33505 1.33577 1.04764 0.86330 0.78921 0.81358 0.80282 1.19652 1.20061 1.18446 1.20982 0.95414 0.96882 1.04361 1.20569 0.99043 0.91947 0.99030 0.92769 0.92758 0.92770 0.91314 0.92033 0.90585 0.91185 0.77548 0.90965 0.91600 0.77029 0.77671 0.89291 0.88682 0.90908 0.86357 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.76 5.83 -26.73 -0.16 -0.92 16 3 C -0.15 -0.97 4.89 -26.73 -0.13 -1.10 16 4 C 0.10 0.74 3.05 -26.73 -0.08 0.66 16 5 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 6 O -0.56 -4.59 12.62 -35.23 -0.44 -5.03 16 7 C 0.11 1.19 5.34 -4.05 -0.02 1.16 16 8 N -0.75 -9.73 5.45 -65.23 -0.36 -10.09 16 9 C 0.69 12.81 8.40 -86.91 -0.73 12.08 16 10 O -0.58 -13.30 13.78 5.29 0.07 -13.23 16 11 N -0.67 -12.27 5.31 -14.10 -0.07 -12.34 16 12 C 0.01 0.26 6.30 -83.57 -0.53 -0.27 16 13 C -0.11 -2.40 9.90 -39.79 -0.39 -2.80 16 14 C -0.22 -5.34 9.74 -39.26 -0.38 -5.73 16 15 C 0.10 2.85 5.57 -106.80 -0.59 2.26 16 16 C -0.46 -12.43 9.03 -37.86 -0.34 -12.77 16 17 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 18 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 19 N -0.79 -20.98 10.99 55.54 0.61 -20.37 16 20 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.16 -4.30 8.64 -39.26 -0.34 -4.64 16 25 C -0.09 -2.21 8.61 -39.79 -0.34 -2.55 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.47 7.82 -51.93 -0.41 0.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 2.20 9.05 45.56 0.41 2.61 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 4.19 8.37 -40.82 -0.34 3.85 16 37 H 0.39 5.67 8.84 -40.82 -0.36 5.31 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 41 H 0.12 3.37 6.19 -52.48 -0.32 3.05 16 42 H 0.11 2.79 6.24 -52.49 -0.33 2.47 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -32.14 351.50 -9.24 -41.38 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -5.55 Total: 13.72 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -3.76 Total: -13.32 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.18 Total: -42.81 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.37 Total: -18.26 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.14 -9.24 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265391088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.361 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds