Wall clock time and date at job start Tue Mar 31 2020 07:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47119 * 2 1 4 4 C 1.53009 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46804 * 305.00347 * 4 3 2 6 6 O 1.42893 * 109.46972 * 64.99938 * 4 3 2 7 7 C 1.52998 * 109.47195 * 185.00354 * 4 3 2 8 8 N 1.46493 * 109.47044 * 180.02562 * 7 4 3 9 9 C 1.34783 * 120.00019 * 179.97438 * 8 7 4 10 10 O 1.21584 * 119.99826 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00025 * 179.97438 * 9 8 7 12 12 C 1.39239 * 119.99572 * 185.17428 * 11 9 8 13 13 C 1.39484 * 119.83295 * 144.26606 * 12 11 9 14 14 C 1.36371 * 120.17148 * 180.21012 * 13 12 11 15 15 C 1.40870 * 119.82600 * 359.51685 * 14 13 12 16 16 C 1.41158 * 120.16587 * 180.27510 * 15 14 13 17 17 H 1.08004 * 119.99601 * 335.06786 * 16 15 14 18 18 C 1.39890 * 120.00148 * 155.06800 * 16 15 14 19 19 N 1.30877 * 120.00205 * 341.98606 * 18 16 15 20 20 Si 1.86805 * 120.00038 * 161.98909 * 18 16 15 21 21 H 1.48503 * 109.47120 * 94.97860 * 20 18 16 22 22 H 1.48497 * 109.47128 * 214.97933 * 20 18 16 23 23 H 1.48501 * 109.46930 * 334.98443 * 20 18 16 24 24 C 1.40868 * 119.67263 * 0.25862 * 15 14 13 25 25 C 1.36371 * 119.83111 * 359.97438 * 24 15 14 26 26 H 1.09005 * 109.47488 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.47078 * 300.00136 * 1 2 3 28 28 H 1.09005 * 109.47326 * 59.99770 * 1 2 3 29 29 H 1.09000 * 109.47106 * 239.99633 * 2 1 3 30 30 H 1.09005 * 109.47326 * 120.00230 * 2 1 3 31 31 H 1.09005 * 109.46984 * 60.00394 * 3 2 1 32 32 H 1.08997 * 109.47463 * 299.99751 * 3 2 1 33 33 H 0.96708 * 113.99709 * 60.00128 * 6 4 3 34 34 H 1.09002 * 109.46997 * 59.99794 * 7 4 3 35 35 H 1.09004 * 109.46775 * 299.99979 * 7 4 3 36 36 H 0.96996 * 120.00086 * 359.97438 * 8 7 4 37 37 H 0.96998 * 120.00068 * 5.17351 * 11 9 8 38 38 H 1.08004 * 119.91431 * 0.02562 * 13 12 11 39 39 H 1.07999 * 120.08845 * 179.79388 * 14 13 12 40 40 H 0.96998 * 120.00489 * 180.02562 * 19 18 16 41 41 H 1.08007 * 120.08363 * 180.02562 * 24 15 14 42 42 H 1.08000 * 119.91774 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 8 4.0468 0.8729 -1.2201 7 6 4.0800 2.8794 0.1265 8 7 5.5450 2.8794 0.1265 9 6 6.2189 4.0423 0.2277 10 8 5.6109 5.0913 0.3186 11 7 7.5666 4.0422 0.2283 12 6 8.2627 5.2293 0.4408 13 6 9.4600 5.2130 1.1563 14 6 10.1452 6.3721 1.3722 15 6 9.6461 7.5866 0.8618 16 6 10.3524 8.7897 1.0760 17 1 11.0164 8.8826 1.9228 18 6 10.1925 9.8618 0.1917 19 7 9.6888 9.6584 -0.9990 20 14 10.6978 11.5838 0.7103 21 1 12.0779 11.8586 0.2358 22 1 9.7638 12.5737 0.1163 23 1 10.6536 11.6878 2.1910 24 6 8.4386 7.5943 0.1362 25 6 7.7622 6.4278 -0.0676 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.7618 1.3473 -2.0131 34 1 3.7163 3.3138 1.0576 35 1 3.7170 3.4688 -0.7156 36 1 6.0299 2.0426 0.0536 37 1 8.0517 3.2153 0.0806 38 1 9.8438 4.2804 1.5428 39 1 11.0704 6.3585 1.9292 40 1 9.5782 10.4016 -1.6124 41 1 8.0501 8.5215 -0.2585 42 1 6.8361 6.4322 -0.6233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265391088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:53 Heat of formation + Delta-G solvation = -99.661249 kcal Electronic energy + Delta-G solvation = -22337.362080 eV Core-core repulsion = 18894.458572 eV Total energy + Delta-G solvation = -3442.903508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40209 -39.53413 -38.81043 -36.22145 -35.39549 -34.97641 -34.62723 -31.45362 -31.20150 -30.33617 -27.43576 -26.23208 -23.41508 -23.05395 -22.67026 -22.14608 -21.45351 -19.38115 -19.20011 -18.36967 -17.38643 -17.21578 -16.97897 -16.33814 -16.01919 -15.71050 -15.57694 -15.19764 -14.91571 -14.69887 -14.47827 -14.12292 -13.93499 -13.68251 -13.60642 -13.19282 -12.87807 -12.75966 -12.73469 -12.65086 -12.38931 -12.19342 -11.79833 -11.69420 -11.53295 -11.50089 -11.23141 -10.99249 -10.85268 -10.65185 -10.09492 -9.42795 -8.82877 -8.57731 -6.24565 0.88722 1.16746 1.38628 1.47583 1.54899 1.78235 2.19926 2.23396 2.77642 3.30672 3.56155 3.63870 3.76639 3.98637 4.08134 4.27793 4.33802 4.45758 4.51250 4.64074 4.66337 4.74855 4.95304 4.98945 5.00777 5.09121 5.11693 5.20141 5.27076 5.31846 5.39558 5.45818 5.48634 5.50175 5.68973 5.81148 6.11280 6.14443 6.22422 6.38238 6.70778 6.77509 6.94808 7.03980 7.18401 7.68674 8.35054 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038649 B = 0.002459 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.288296 B =11382.990642 C =11775.024569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.146 4.146 4 C 0.112 3.888 5 H 0.111 0.889 6 O -0.567 6.567 7 C 0.106 3.894 8 N -0.724 5.724 9 C 0.690 3.310 10 O -0.628 6.628 11 N -0.658 5.658 12 C 0.024 3.976 13 C -0.100 4.100 14 C -0.223 4.223 15 C 0.071 3.929 16 C -0.495 4.495 17 H 0.081 0.919 18 C 0.030 3.970 19 N -0.827 5.827 20 Si 0.983 3.017 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.258 1.258 24 C -0.181 4.181 25 C -0.100 4.100 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.387 0.613 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.412 0.588 37 H 0.413 0.587 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.287 0.713 41 H 0.095 0.905 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 -17.647 0.244 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.184 4.184 4 C 0.052 3.948 5 H 0.129 0.871 6 O -0.374 6.374 7 C -0.019 4.019 8 N -0.382 5.382 9 C 0.390 3.610 10 O -0.509 6.509 11 N -0.306 5.306 12 C -0.070 4.070 13 C -0.120 4.120 14 C -0.243 4.243 15 C 0.069 3.931 16 C -0.524 4.524 17 H 0.099 0.901 18 C -0.184 4.184 19 N -0.453 5.453 20 Si 0.804 3.196 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.182 1.182 24 C -0.202 4.202 25 C -0.121 4.121 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.237 0.763 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.813 -17.070 0.511 21.350 hybrid contribution 0.281 0.792 -0.519 0.988 sum -12.532 -16.278 -0.008 20.543 Atomic orbital electron populations 1.21792 0.95513 1.01930 1.01909 1.21415 0.95904 0.95711 1.02445 1.22220 0.93939 0.98434 1.03812 1.22096 0.93781 0.90539 0.88377 0.87149 1.86547 1.77341 1.57326 1.16221 1.22030 0.78526 0.99010 1.02300 1.44785 1.07236 1.06890 1.79245 1.16254 0.82037 0.84516 0.78159 1.90890 1.68660 1.32315 1.59002 1.41829 1.04011 1.10095 1.74657 1.17031 0.96794 0.85453 1.07732 1.20376 0.94969 0.98343 0.98349 1.20797 1.01684 0.92137 1.09676 1.18012 0.90963 0.93484 0.90688 1.19795 1.24428 0.97818 1.10404 0.90136 1.26830 0.92984 1.05166 0.93432 1.69923 1.34451 1.35099 1.05847 0.85182 0.78969 0.75694 0.79784 1.18384 1.19418 1.18150 1.20868 0.96454 0.96721 1.06117 1.20585 0.98741 0.92973 0.99760 0.92380 0.92672 0.92703 0.91708 0.91934 0.90361 0.90761 0.76322 0.91741 0.92276 0.75110 0.74978 0.84803 0.87097 0.90266 0.88706 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.26 5.83 30.59 0.18 -1.08 16 3 C -0.15 -1.61 4.89 30.60 0.15 -1.46 16 4 C 0.11 1.49 3.05 30.60 0.09 1.58 16 5 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 6 O -0.57 -7.91 12.62 -148.98 -1.88 -9.79 16 7 C 0.11 2.15 5.34 86.38 0.46 2.61 16 8 N -0.72 -17.41 5.45 -478.54 -2.61 -20.02 16 9 C 0.69 24.71 8.40 179.05 1.50 26.22 16 10 O -0.63 -29.08 13.78 -3.98 -0.05 -29.14 16 11 N -0.66 -22.96 5.31 -316.78 -1.68 -24.64 16 12 C 0.02 1.09 6.30 38.57 0.24 1.33 16 13 C -0.10 -4.31 9.90 22.13 0.22 -4.09 16 14 C -0.22 -10.94 9.74 22.48 0.22 -10.72 16 15 C 0.07 4.00 5.57 -21.27 -0.12 3.89 16 16 C -0.50 -27.47 9.03 23.39 0.21 -27.25 16 17 H 0.08 4.23 7.91 -2.91 -0.02 4.21 16 18 C 0.03 1.59 5.13 85.24 0.44 2.03 16 19 N -0.83 -45.41 10.99 21.82 0.24 -45.17 16 20 Si 0.98 39.50 29.60 68.60 2.03 41.53 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 24 C -0.18 -10.44 8.64 22.48 0.19 -10.25 16 25 C -0.10 -5.32 8.61 22.13 0.19 -5.13 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.76 7.82 -2.39 -0.02 0.74 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.39 3.66 9.05 -74.05 -0.67 2.99 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.41 7.47 8.37 -92.71 -0.78 6.70 16 37 H 0.41 10.65 8.84 -92.71 -0.82 9.83 16 38 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 40 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 41 H 0.09 5.77 6.19 -2.91 -0.02 5.75 16 42 H 0.09 5.18 6.24 -2.91 -0.02 5.16 16 Total: -1.00 -72.01 351.50 -0.47 -72.48 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -1.21 Total: 37.90 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 4.70 Total: -23.16 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -4.05 Total: -89.82 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.93 Total: -38.93 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -72.01 -0.47 -72.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265391088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.183 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds