Wall clock time and date at job start Tue Mar 31 2020 07:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46633 * 2 1 4 4 C 1.53004 * 109.46638 * 185.47835 * 3 2 1 5 5 H 1.09000 * 109.47058 * 54.40258 * 4 3 2 6 6 N 1.46897 * 109.47327 * 294.40097 * 4 3 2 7 7 C 1.46900 * 111.00146 * 154.17386 * 6 4 3 8 8 C 1.52999 * 109.47074 * 176.06918 * 7 6 4 9 9 C 1.50700 * 109.47016 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00145 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00088 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99902 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47440 * 59.99706 * 13 11 9 15 15 H 1.48497 * 109.47159 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47376 * 299.99887 * 13 11 9 17 17 C 1.50704 * 109.46667 * 174.40205 * 4 3 2 18 18 C 1.38261 * 119.99985 * 79.73039 * 17 4 3 19 19 C 1.38210 * 119.99826 * 179.76353 * 18 17 4 20 20 C 1.38255 * 119.99653 * 0.50458 * 19 18 17 21 21 C 1.38213 * 120.00462 * 359.74921 * 20 19 18 22 22 N 1.48016 * 120.00142 * 179.97438 * 21 20 19 23 23 O 1.21794 * 120.00413 * 180.02562 * 22 21 20 24 24 O 1.21809 * 120.00246 * 0.02562 * 22 21 20 25 25 C 1.38209 * 119.99712 * 259.99749 * 17 4 3 26 26 H 1.09004 * 109.47274 * 299.99337 * 1 2 3 27 27 H 1.09002 * 109.47684 * 59.99629 * 1 2 3 28 28 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47120 * 240.00901 * 2 1 3 30 30 H 1.08990 * 109.47409 * 120.00041 * 2 1 3 31 31 H 1.08996 * 109.46677 * 65.48383 * 3 2 1 32 32 H 1.08995 * 109.47104 * 305.47629 * 3 2 1 33 33 H 1.00908 * 110.99956 * 30.22152 * 6 4 3 34 34 H 1.09005 * 109.47111 * 296.06819 * 7 6 4 35 35 H 1.09000 * 109.47052 * 56.06837 * 7 6 4 36 36 H 1.08997 * 109.47294 * 299.99639 * 8 7 6 37 37 H 1.09000 * 109.47247 * 60.00038 * 8 7 6 38 38 H 0.97008 * 119.99730 * 179.97438 * 12 11 9 39 39 H 1.08003 * 119.99820 * 359.97438 * 18 17 4 40 40 H 1.08003 * 119.99876 * 180.22789 * 19 18 17 41 41 H 1.08008 * 119.99883 * 179.72540 * 20 19 18 42 42 H 1.07995 * 120.00094 * 0.02562 * 25 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5637 1.4448 -0.1377 5 1 3.8495 0.8740 -1.0213 6 7 4.1641 0.8335 1.0555 7 6 5.4819 0.2620 0.7477 8 6 6.1166 -0.2767 2.0314 9 6 7.4688 -0.8624 1.7158 10 1 7.8383 -0.8519 0.7010 11 6 8.2337 -1.4127 2.7223 12 7 7.7835 -1.4259 3.9579 13 14 9.9094 -2.1393 2.3309 14 1 10.7823 -1.0869 1.7514 15 1 10.5255 -2.6621 3.5768 16 1 9.7530 -3.2462 1.3533 17 6 4.0534 2.8634 -0.2759 18 6 4.1828 3.6623 0.8450 19 6 4.6366 4.9617 0.7188 20 6 4.9512 5.4658 -0.5295 21 6 4.8169 4.6688 -1.6507 22 7 5.1532 5.2087 -2.9872 23 8 5.0344 4.5066 -3.9752 24 8 5.5488 6.3553 -3.0990 25 6 4.3680 3.3673 -1.5238 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.7589 1.9272 0.9350 32 1 1.5986 1.9839 -0.8368 33 1 3.5514 0.1367 1.4520 34 1 5.3670 -0.5507 0.0304 35 1 6.1225 1.0344 0.3221 36 1 6.2316 0.5360 2.7486 37 1 5.4760 -1.0490 2.4571 38 1 8.3216 -1.8134 4.6660 39 1 3.9325 3.2699 1.8196 40 1 4.7412 5.5846 1.5949 41 1 5.3016 6.4826 -0.6286 42 1 4.2624 2.7447 -2.3999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273256082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:48 Heat of formation + Delta-G solvation = -3.112135 kcal Electronic energy + Delta-G solvation = -22930.558047 eV Core-core repulsion = 19491.841224 eV Total energy + Delta-G solvation = -3438.716824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.18158 -39.89072 -37.30624 -36.56922 -34.37002 -33.03482 -31.97797 -31.80524 -29.52320 -27.55601 -26.55119 -24.47781 -23.76484 -22.70272 -21.67684 -20.74251 -20.54510 -18.73061 -18.55981 -17.53652 -16.62990 -16.45387 -15.96782 -15.48103 -15.07267 -14.87505 -14.44814 -14.10660 -13.77885 -13.40497 -13.17250 -13.07926 -12.45485 -12.28762 -12.18089 -11.90633 -11.76327 -11.57180 -11.35429 -11.28355 -11.16640 -11.15730 -10.98657 -10.89453 -10.74659 -10.59459 -10.12188 -9.59633 -9.52150 -9.28752 -9.12726 -8.42644 -8.11621 -6.06913 -4.09773 -0.14911 0.86927 1.37239 1.40484 3.24543 3.29092 3.33751 3.36277 4.11546 4.35825 4.38512 4.53655 4.67175 4.79172 4.83293 4.91223 4.92739 4.96227 5.18365 5.29485 5.34557 5.40206 5.49972 5.53328 5.62485 5.68932 5.76831 5.93521 5.97858 6.05801 6.13416 6.15270 6.17454 6.20209 6.33297 6.49607 6.85014 7.26543 7.59521 7.62746 7.66189 7.80788 7.97250 8.34558 8.96883 9.54671 11.04285 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.004248 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.678131 B = 6589.893417 C = 8277.155741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.117 4.117 4 C 0.121 3.879 5 H 0.057 0.943 6 N -0.685 5.685 7 C 0.065 3.935 8 C 0.029 3.971 9 C -0.524 4.524 10 H 0.053 0.947 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 C -0.063 4.063 18 C -0.029 4.029 19 C -0.122 4.122 20 C -0.062 4.062 21 C -0.049 4.049 22 N 0.033 4.967 23 O -0.167 6.167 24 O -0.169 6.169 25 C -0.056 4.056 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.344 0.656 34 H 0.019 0.981 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.014 0.986 38 H 0.262 0.738 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.596 9.854 -6.831 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.155 4.155 4 C 0.011 3.989 5 H 0.075 0.925 6 N -0.318 5.318 7 C -0.063 4.063 8 C -0.009 4.009 9 C -0.563 4.563 10 H 0.071 0.929 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.065 4.065 18 C -0.047 4.047 19 C -0.141 4.141 20 C -0.081 4.081 21 C -0.132 4.132 22 N 0.551 4.449 23 O -0.382 6.382 24 O -0.384 6.384 25 C -0.075 4.075 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.165 0.835 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.452 10.115 -5.776 17.794 hybrid contribution 0.988 -1.056 -1.037 1.779 sum -12.464 9.059 -6.813 16.847 Atomic orbital electron populations 1.21740 0.95589 1.01687 1.01694 1.21593 0.96123 0.96459 1.02552 1.21804 0.93189 0.97517 1.02950 1.20452 0.93640 0.90295 0.94552 0.92544 1.60585 1.05867 1.38568 1.26758 1.22232 0.87580 0.96200 1.00262 1.19027 0.94637 0.95953 0.91260 1.21116 1.02231 1.38746 0.94222 0.92898 1.24974 0.98151 0.96001 0.95021 1.69952 1.37863 1.45362 1.00002 0.86663 0.84219 0.79539 0.77631 1.20223 1.21193 1.20232 1.19965 0.98370 0.96936 0.91214 1.21632 0.91026 0.91824 1.00222 1.21284 0.99874 0.96427 0.96498 1.21028 0.96003 1.00439 0.90646 1.21005 1.13306 0.96521 0.82412 1.43666 0.97657 1.00430 1.03190 1.94529 1.57258 1.57870 1.28535 1.94514 1.47838 1.03094 1.92908 1.20899 0.94670 0.92464 0.99505 0.92644 0.92912 0.92682 0.91926 0.91301 0.90680 0.91448 0.83515 0.96276 0.92553 0.95737 0.96752 0.92885 0.82969 0.83650 0.83389 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.20 5.67 -26.73 -0.15 -1.36 16 3 C -0.12 -1.11 4.77 -26.72 -0.13 -1.24 16 4 C 0.12 1.45 2.24 -68.86 -0.15 1.30 16 5 H 0.06 0.71 7.70 -51.93 -0.40 0.31 16 6 N -0.68 -10.17 5.54 -107.95 -0.60 -10.77 16 7 C 0.07 1.26 5.39 -3.82 -0.02 1.24 16 8 C 0.03 0.71 5.27 -27.88 -0.15 0.56 16 9 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 10 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 13 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.06 -0.76 4.71 -104.62 -0.49 -1.25 16 18 C -0.03 -0.33 9.32 -39.58 -0.37 -0.69 16 19 C -0.12 -1.22 10.05 -39.59 -0.40 -1.61 16 20 C -0.06 -0.68 9.56 -39.58 -0.38 -1.06 16 21 C -0.05 -0.64 6.85 -79.95 -0.55 -1.19 16 22 N 0.03 0.48 4.45 33.96 0.15 0.63 16 23 O -0.17 -2.58 18.45 -29.46 -0.54 -3.12 16 24 O -0.17 -2.53 18.45 -29.46 -0.54 -3.08 16 25 C -0.06 -0.69 9.18 -39.59 -0.36 -1.05 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.69 6.64 -51.93 -0.34 0.34 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.34 4.89 6.63 -39.29 -0.26 4.63 16 34 H 0.02 0.37 8.13 -51.93 -0.42 -0.05 16 35 H 0.06 1.13 7.97 -51.93 -0.41 0.72 16 36 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.15 1.69 7.73 -52.48 -0.41 1.28 16 40 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.15 1.39 7.61 -52.48 -0.40 0.99 16 42 H 0.15 1.71 7.59 -52.49 -0.40 1.31 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -30.21 357.75 -10.01 -40.22 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.39 Total: 0.23 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -3.19 Total: -20.40 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.29 Total: -35.61 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -1.09 Total: -6.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.21 -10.01 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273256082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.112 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds