Wall clock time and date at job start Tue Mar 31 2020 07:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46633 * 2 1 4 4 C 1.53004 * 109.46638 * 185.47835 * 3 2 1 5 5 H 1.09000 * 109.47058 * 54.40258 * 4 3 2 6 6 N 1.46897 * 109.47327 * 294.40097 * 4 3 2 7 7 C 1.46900 * 111.00146 * 154.17386 * 6 4 3 8 8 C 1.52999 * 109.47074 * 176.06918 * 7 6 4 9 9 C 1.50700 * 109.47016 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00145 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00088 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99902 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47440 * 59.99706 * 13 11 9 15 15 H 1.48497 * 109.47159 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47376 * 299.99887 * 13 11 9 17 17 C 1.50704 * 109.46667 * 174.40205 * 4 3 2 18 18 C 1.38261 * 119.99985 * 79.73039 * 17 4 3 19 19 C 1.38210 * 119.99826 * 179.76353 * 18 17 4 20 20 C 1.38255 * 119.99653 * 0.50458 * 19 18 17 21 21 C 1.38213 * 120.00462 * 359.74921 * 20 19 18 22 22 N 1.48016 * 120.00142 * 179.97438 * 21 20 19 23 23 O 1.21794 * 120.00413 * 180.02562 * 22 21 20 24 24 O 1.21809 * 120.00246 * 0.02562 * 22 21 20 25 25 C 1.38209 * 119.99712 * 259.99749 * 17 4 3 26 26 H 1.09004 * 109.47274 * 299.99337 * 1 2 3 27 27 H 1.09002 * 109.47684 * 59.99629 * 1 2 3 28 28 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47120 * 240.00901 * 2 1 3 30 30 H 1.08990 * 109.47409 * 120.00041 * 2 1 3 31 31 H 1.08996 * 109.46677 * 65.48383 * 3 2 1 32 32 H 1.08995 * 109.47104 * 305.47629 * 3 2 1 33 33 H 1.00908 * 110.99956 * 30.22152 * 6 4 3 34 34 H 1.09005 * 109.47111 * 296.06819 * 7 6 4 35 35 H 1.09000 * 109.47052 * 56.06837 * 7 6 4 36 36 H 1.08997 * 109.47294 * 299.99639 * 8 7 6 37 37 H 1.09000 * 109.47247 * 60.00038 * 8 7 6 38 38 H 0.97008 * 119.99730 * 179.97438 * 12 11 9 39 39 H 1.08003 * 119.99820 * 359.97438 * 18 17 4 40 40 H 1.08003 * 119.99876 * 180.22789 * 19 18 17 41 41 H 1.08008 * 119.99883 * 179.72540 * 20 19 18 42 42 H 1.07995 * 120.00094 * 0.02562 * 25 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5637 1.4448 -0.1377 5 1 3.8495 0.8740 -1.0213 6 7 4.1641 0.8335 1.0555 7 6 5.4819 0.2620 0.7477 8 6 6.1166 -0.2767 2.0314 9 6 7.4688 -0.8624 1.7158 10 1 7.8383 -0.8519 0.7010 11 6 8.2337 -1.4127 2.7223 12 7 7.7835 -1.4259 3.9579 13 14 9.9094 -2.1393 2.3309 14 1 10.7823 -1.0869 1.7514 15 1 10.5255 -2.6621 3.5768 16 1 9.7530 -3.2462 1.3533 17 6 4.0534 2.8634 -0.2759 18 6 4.1828 3.6623 0.8450 19 6 4.6366 4.9617 0.7188 20 6 4.9512 5.4658 -0.5295 21 6 4.8169 4.6688 -1.6507 22 7 5.1532 5.2087 -2.9872 23 8 5.0344 4.5066 -3.9752 24 8 5.5488 6.3553 -3.0990 25 6 4.3680 3.3673 -1.5238 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.7589 1.9272 0.9350 32 1 1.5986 1.9839 -0.8368 33 1 3.5514 0.1367 1.4520 34 1 5.3670 -0.5507 0.0304 35 1 6.1225 1.0344 0.3221 36 1 6.2316 0.5360 2.7486 37 1 5.4760 -1.0490 2.4571 38 1 8.3216 -1.8134 4.6660 39 1 3.9325 3.2699 1.8196 40 1 4.7412 5.5846 1.5949 41 1 5.3016 6.4826 -0.6286 42 1 4.2624 2.7447 -2.3999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273256082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:48 Heat of formation + Delta-G solvation = -18.421869 kcal Electronic energy + Delta-G solvation = -22931.221927 eV Core-core repulsion = 19491.841224 eV Total energy + Delta-G solvation = -3439.380704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.27595 -40.84891 -38.36671 -37.70405 -35.85651 -34.49020 -33.23337 -32.77364 -30.94950 -28.78972 -27.60017 -25.97253 -24.99932 -23.65132 -22.58185 -22.37484 -21.56962 -19.82036 -19.61840 -18.64241 -18.48477 -17.53411 -17.07497 -16.69379 -16.43143 -15.92116 -15.74444 -15.09670 -14.98150 -14.61604 -14.25976 -14.13088 -14.02033 -13.35382 -13.19017 -13.13001 -12.87229 -12.84879 -12.72536 -12.63026 -12.45772 -12.33888 -12.27828 -12.12469 -11.98460 -11.70831 -11.53015 -11.38038 -11.26029 -10.56672 -10.49617 -10.10398 -9.41637 -8.21683 -6.32060 -1.20907 -0.01293 0.34179 0.37506 1.39168 1.40684 1.48752 2.33711 2.38905 3.10329 3.12385 3.42748 3.51477 3.84904 3.90847 3.97126 4.03528 4.08893 4.13525 4.31940 4.43463 4.48172 4.61801 4.64886 4.72550 4.74504 4.82480 4.91321 5.03635 5.06568 5.10082 5.15369 5.26558 5.28664 5.30595 5.44469 5.46129 5.56802 5.68537 5.77931 6.10160 6.23785 6.47217 6.51186 6.84876 7.37094 8.89683 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.004248 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.678131 B = 6589.893417 C = 8277.155741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.107 4.107 4 C 0.124 3.876 5 H 0.053 0.947 6 N -0.680 5.680 7 C 0.087 3.913 8 C 0.036 3.964 9 C -0.546 4.546 10 H 0.054 0.946 11 C 0.007 3.993 12 N -0.927 5.927 13 Si 0.958 3.042 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.268 1.268 17 C -0.072 4.072 18 C -0.033 4.033 19 C -0.112 4.112 20 C -0.059 4.059 21 C -0.065 4.065 22 N 0.034 4.966 23 O -0.194 6.194 24 O -0.172 6.172 25 C -0.061 4.061 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.349 0.651 34 H 0.018 0.982 35 H 0.048 0.952 36 H -0.001 1.001 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.156 0.844 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.841 10.456 -6.816 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.145 4.145 4 C 0.014 3.986 5 H 0.071 0.929 6 N -0.314 5.314 7 C -0.042 4.042 8 C -0.001 4.001 9 C -0.585 4.585 10 H 0.072 0.928 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.783 3.217 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.193 1.193 17 C -0.073 4.073 18 C -0.051 4.051 19 C -0.130 4.130 20 C -0.078 4.078 21 C -0.148 4.148 22 N 0.548 4.452 23 O -0.404 6.404 24 O -0.388 6.388 25 C -0.081 4.081 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.170 0.830 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.017 0.983 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.173 0.827 40 H 0.196 0.804 41 H 0.184 0.816 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.719 10.699 -5.806 18.341 hybrid contribution 1.023 -1.200 -0.968 1.850 sum -12.696 9.499 -6.774 17.242 Atomic orbital electron populations 1.21716 0.94399 1.02059 1.02260 1.21590 0.97168 0.96105 1.01907 1.21748 0.91087 0.97895 1.03763 1.20489 0.95174 0.89999 0.92914 0.92940 1.60432 1.04421 1.38195 1.28323 1.21763 0.89464 0.95796 0.97177 1.18863 0.93850 0.94416 0.93006 1.21569 1.03642 1.38885 0.94388 0.92767 1.25841 1.02063 0.96378 0.94840 1.70071 1.39428 1.46249 1.00952 0.85611 0.79491 0.78938 0.77681 1.19573 1.20650 1.19309 1.19969 0.99009 0.96954 0.91416 1.21812 0.90826 0.92471 1.00022 1.21624 0.98185 0.96061 0.97119 1.21339 0.95159 1.01041 0.90253 1.21198 1.14622 0.97159 0.81831 1.43930 0.97264 1.00268 1.03777 1.94521 1.58448 1.58004 1.29430 1.94487 1.47769 1.03366 1.93168 1.20936 0.94872 0.92504 0.99769 0.92198 0.92212 0.92466 0.92335 0.92218 0.90092 0.90215 0.82954 0.96364 0.93318 0.98298 0.98698 0.92728 0.82672 0.80413 0.81647 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.13 -2.25 5.67 30.60 0.17 -2.08 16 3 C -0.11 -1.87 4.77 30.60 0.15 -1.72 16 4 C 0.12 2.85 2.24 44.17 0.10 2.95 16 5 H 0.05 1.28 7.70 -2.39 -0.02 1.26 16 6 N -0.68 -19.84 5.54 -495.44 -2.75 -22.58 16 7 C 0.09 3.36 5.39 86.30 0.47 3.82 16 8 C 0.04 1.81 5.27 29.85 0.16 1.97 16 9 C -0.55 -30.39 9.11 25.60 0.23 -30.15 16 10 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 11 C 0.01 0.41 5.46 84.66 0.46 0.87 16 12 N -0.93 -54.96 13.29 21.45 0.28 -54.68 16 13 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 C -0.07 -1.64 4.71 -19.86 -0.09 -1.74 16 18 C -0.03 -0.68 9.32 22.27 0.21 -0.48 16 19 C -0.11 -1.92 10.05 22.27 0.22 -1.69 16 20 C -0.06 -1.17 9.56 22.27 0.21 -0.95 16 21 C -0.06 -1.62 6.85 36.37 0.25 -1.37 16 22 N 0.03 0.97 4.45 -46.47 -0.21 0.77 16 23 O -0.19 -6.05 18.45 18.89 0.35 -5.71 16 24 O -0.17 -5.03 18.45 18.87 0.35 -4.69 16 25 C -0.06 -1.47 9.18 22.27 0.20 -1.26 16 26 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.14 6.64 -2.39 -0.02 1.13 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.35 9.76 6.63 -89.69 -0.59 9.17 16 34 H 0.02 0.70 8.13 -2.38 -0.02 0.68 16 35 H 0.05 1.95 7.97 -2.39 -0.02 1.93 16 36 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 39 H 0.16 3.15 7.73 -2.91 -0.02 3.12 16 40 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.17 2.67 7.61 -2.91 -0.02 2.65 16 42 H 0.15 3.42 7.59 -2.91 -0.02 3.40 16 Total: -1.00 -64.88 357.75 3.92 -60.96 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.42 Total: 13.47 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 3.45 Total: -33.22 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -2.67 Total: -76.50 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.70 Total: -10.39 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -64.88 3.92 -60.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273256082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.537 kcal (2) G-P(sol) polarization free energy of solvation -64.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds