Wall clock time and date at job start Tue Mar 31 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47262 * 2 1 4 4 C 1.50694 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.29941 * 125.37522 * 90.00359 * 4 3 2 6 6 C 1.36069 * 108.47355 * 180.02562 * 5 4 3 7 7 C 1.47426 * 126.44373 * 179.97438 * 6 5 4 8 8 O 1.21609 * 119.99895 * 185.87829 * 7 6 5 9 9 N 1.34777 * 119.99884 * 5.87312 * 7 6 5 10 10 C 1.46499 * 119.99447 * 185.21602 * 9 7 6 11 11 C 1.50703 * 109.47336 * 270.00253 * 10 9 7 12 12 H 1.08001 * 119.99547 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00202 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00136 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00018 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47344 * 89.99602 * 15 13 11 17 17 H 1.48504 * 109.47163 * 209.99845 * 15 13 11 18 18 H 1.48500 * 109.47099 * 329.99307 * 15 13 11 19 19 C 1.46490 * 120.00296 * 5.21926 * 9 7 6 20 20 C 1.53003 * 109.47172 * 275.30030 * 19 9 7 21 21 C 1.53005 * 117.49763 * 243.74583 * 20 19 9 22 22 C 1.53001 * 117.49903 * 175.09049 * 20 19 9 23 23 C 1.36083 * 107.10678 * 0.22924 * 6 5 4 24 24 O 1.34049 * 125.38385 * 270.04022 * 4 3 2 25 25 H 1.08993 * 109.47338 * 59.99628 * 1 2 3 26 26 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46757 * 299.99580 * 1 2 3 28 28 H 1.08999 * 109.46904 * 240.00012 * 2 1 3 29 29 H 1.09002 * 109.47196 * 120.00248 * 2 1 3 30 30 H 1.09005 * 109.47058 * 59.99734 * 3 2 1 31 31 H 1.09002 * 109.47218 * 300.00234 * 3 2 1 32 32 H 1.08999 * 109.47454 * 30.00300 * 10 9 7 33 33 H 1.09003 * 109.47037 * 150.00459 * 10 9 7 34 34 H 0.97003 * 120.00783 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.47371 * 155.30249 * 19 9 7 36 36 H 1.08997 * 109.47327 * 35.29793 * 19 9 7 37 37 H 1.08998 * 115.54754 * 29.41290 * 20 19 9 38 38 H 1.08999 * 117.49762 * 0.02562 * 21 20 19 39 39 H 1.09002 * 117.49598 * 145.01920 * 21 20 19 40 40 H 1.09002 * 117.49522 * 214.97692 * 22 20 19 41 41 H 1.09000 * 117.49894 * 359.97438 * 22 20 19 42 42 H 1.07998 * 126.52693 * 179.77378 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.2997 1.4424 -1.0586 6 6 5.6014 1.4418 -0.6624 7 6 6.7845 1.4410 -1.5420 8 8 7.8975 1.3327 -1.0641 9 7 6.6326 1.5602 -2.8759 10 6 7.7960 1.4449 -3.7587 11 6 8.4102 2.8062 -3.9608 12 1 7.9769 3.6708 -3.4800 13 6 9.5245 2.9480 -4.7602 14 7 10.0518 1.8952 -5.3461 15 14 10.2862 4.6352 -5.0101 16 1 11.3124 4.8749 -3.9638 17 1 10.9220 4.6977 -6.3506 18 1 9.2297 5.6743 -4.9145 19 6 5.3042 1.8051 -3.4429 20 6 4.5717 0.4734 -3.6195 21 6 4.2175 0.0457 -5.0452 22 6 3.1180 0.5243 -4.0939 23 6 5.6057 1.4364 0.6984 24 8 4.3227 1.4419 1.0939 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 8.5305 0.7784 -3.3067 33 1 7.4829 1.0411 -4.7216 34 1 10.8360 1.9948 -5.9082 35 1 5.4071 2.2944 -4.4115 36 1 4.7347 2.4465 -2.7704 37 1 4.8431 -0.3098 -2.9118 38 1 4.5067 0.7128 -5.8573 39 1 4.2554 -1.0191 -5.2753 40 1 2.4330 -0.2258 -3.6985 41 1 2.6833 1.5065 -4.2797 42 1 6.4756 1.4311 1.3384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273545161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:40 Heat of formation + Delta-G solvation = 9.254593 kcal Electronic energy + Delta-G solvation = -23874.596487 eV Core-core repulsion = 20436.415925 eV Total energy + Delta-G solvation = -3438.180562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.26384 -38.92661 -36.96153 -35.60160 -34.53933 -34.30389 -32.42315 -30.62106 -27.94325 -27.20804 -26.01516 -24.10951 -22.50964 -22.09385 -21.93172 -20.96065 -20.41219 -18.96038 -17.24924 -16.63928 -16.39992 -16.17775 -15.49016 -15.27454 -14.93134 -14.65789 -14.38739 -14.12299 -13.57388 -13.45993 -13.33691 -12.64138 -12.44126 -12.25736 -12.21313 -12.03402 -11.65719 -11.33137 -11.21754 -11.15547 -11.03891 -10.91839 -10.85925 -10.58600 -10.30641 -10.19802 -9.97205 -9.56631 -9.42048 -9.13641 -8.82035 -8.39475 -7.61104 -6.00411 -4.04824 1.35770 2.29465 2.68888 3.34147 3.39760 3.42502 3.74773 3.91855 4.04953 4.30507 4.48333 4.65964 4.67919 4.84738 4.99964 5.10269 5.23929 5.28622 5.33530 5.34897 5.35714 5.45668 5.53554 5.65732 5.74414 5.80347 5.89234 5.91313 5.92821 5.98098 6.11067 6.21770 6.27048 6.42259 6.45142 6.77731 7.12326 7.45902 7.56264 7.71028 7.96149 8.26731 8.43746 8.90293 9.06994 9.59732 11.07636 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.004436 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.917141 B = 6311.120420 C = 7159.454138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.019 4.019 4 C 0.179 3.821 5 N -0.438 5.438 6 C -0.055 4.055 7 C 0.583 3.417 8 O -0.537 6.537 9 N -0.574 5.574 10 C 0.247 3.753 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.148 3.852 20 C -0.129 4.129 21 C -0.191 4.191 22 C -0.170 4.170 23 C -0.006 4.006 24 O -0.203 6.203 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.927 -3.045 9.335 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.057 4.057 4 C -0.030 4.030 5 N -0.168 5.168 6 C -0.175 4.175 7 C 0.368 3.632 8 O -0.415 6.415 9 N -0.303 5.303 10 C 0.129 3.871 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.024 3.976 20 C -0.148 4.148 21 C -0.228 4.228 22 C -0.208 4.208 23 C -0.079 4.079 24 O -0.089 6.089 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -19.391 -3.147 8.808 21.529 hybrid contribution 0.865 0.844 0.465 1.295 sum -18.526 -2.302 9.273 20.845 Atomic orbital electron populations 1.21748 0.94782 1.02148 1.02117 1.21534 0.96289 0.94927 1.03244 1.20128 0.81250 0.99319 1.05052 1.26402 0.96318 1.01443 0.78809 1.71187 1.00728 1.16428 1.28481 1.22269 0.92461 1.09632 0.93136 1.16811 0.85602 0.78459 0.82311 1.90795 1.24440 1.51544 1.74758 1.48044 1.09754 1.67258 1.05258 1.19347 0.81913 0.97679 0.88200 1.21428 1.12277 0.93675 1.28927 0.92447 1.24918 0.96539 0.97011 0.95584 1.69934 1.22667 1.28924 1.31872 0.86502 0.79456 0.84137 0.77350 1.20566 1.21165 1.19943 1.21160 0.82619 0.94436 0.99396 1.22492 0.96496 0.99798 0.96025 1.23089 1.04184 1.01211 0.94295 1.22739 0.91764 1.01941 1.04321 1.25213 0.84436 1.02258 0.96023 1.84328 1.16832 1.69691 1.38058 0.92226 0.92314 0.92542 0.90832 0.91617 0.89206 0.87569 0.93986 0.94541 0.92753 0.90684 0.89509 0.88815 0.88835 0.89653 0.89803 0.89283 0.75696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 3 C -0.02 -0.16 5.84 -27.88 -0.16 -0.32 16 4 C 0.18 2.22 7.56 -13.08 -0.10 2.12 16 5 N -0.44 -6.67 6.79 -7.65 -0.05 -6.72 16 6 C -0.05 -0.97 6.55 -83.02 -0.54 -1.51 16 7 C 0.58 13.07 7.62 -12.52 -0.10 12.98 16 8 O -0.54 -13.86 16.53 5.27 0.09 -13.77 16 9 N -0.57 -13.04 2.47 -176.33 -0.43 -13.47 16 10 C 0.25 6.67 5.10 -5.19 -0.03 6.64 16 11 C -0.52 -15.20 9.39 -34.44 -0.32 -15.53 16 12 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.90 22.21 29.54 -169.99 -5.02 17.18 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.15 2.75 5.25 -4.05 -0.02 2.73 16 20 C -0.13 -2.06 4.40 -90.61 -0.40 -2.46 16 21 C -0.19 -2.76 10.18 -26.69 -0.27 -3.03 16 22 C -0.17 -2.15 10.25 -26.70 -0.27 -2.43 16 23 C -0.01 -0.09 11.95 29.96 0.36 0.27 16 24 O -0.20 -2.64 10.73 6.51 0.07 -2.57 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.04 1.26 7.50 -51.93 -0.39 0.87 16 33 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 1.44 7.77 -51.93 -0.40 1.04 16 36 H 0.09 1.55 5.89 -51.93 -0.31 1.24 16 37 H 0.09 1.65 8.01 -51.93 -0.42 1.23 16 38 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.23 2.74 8.06 -52.49 -0.42 2.32 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -33.34 356.90 -7.53 -40.86 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.55 Total: -0.36 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.75 Total: -0.37 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.25 Total: -46.35 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.16 Total: -16.35 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.34 -7.53 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273545161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.119 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds