Wall clock time and date at job start Tue Mar 31 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47262 * 2 1 4 4 C 1.50694 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.29941 * 125.37522 * 90.00359 * 4 3 2 6 6 C 1.36069 * 108.47355 * 180.02562 * 5 4 3 7 7 C 1.47426 * 126.44373 * 179.97438 * 6 5 4 8 8 O 1.21609 * 119.99895 * 185.87829 * 7 6 5 9 9 N 1.34777 * 119.99884 * 5.87312 * 7 6 5 10 10 C 1.46499 * 119.99447 * 185.21602 * 9 7 6 11 11 C 1.50703 * 109.47336 * 270.00253 * 10 9 7 12 12 H 1.08001 * 119.99547 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00202 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00136 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00018 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47344 * 89.99602 * 15 13 11 17 17 H 1.48504 * 109.47163 * 209.99845 * 15 13 11 18 18 H 1.48500 * 109.47099 * 329.99307 * 15 13 11 19 19 C 1.46490 * 120.00296 * 5.21926 * 9 7 6 20 20 C 1.53003 * 109.47172 * 275.30030 * 19 9 7 21 21 C 1.53005 * 117.49763 * 243.74583 * 20 19 9 22 22 C 1.53001 * 117.49903 * 175.09049 * 20 19 9 23 23 C 1.36083 * 107.10678 * 0.22924 * 6 5 4 24 24 O 1.34049 * 125.38385 * 270.04022 * 4 3 2 25 25 H 1.08993 * 109.47338 * 59.99628 * 1 2 3 26 26 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46757 * 299.99580 * 1 2 3 28 28 H 1.08999 * 109.46904 * 240.00012 * 2 1 3 29 29 H 1.09002 * 109.47196 * 120.00248 * 2 1 3 30 30 H 1.09005 * 109.47058 * 59.99734 * 3 2 1 31 31 H 1.09002 * 109.47218 * 300.00234 * 3 2 1 32 32 H 1.08999 * 109.47454 * 30.00300 * 10 9 7 33 33 H 1.09003 * 109.47037 * 150.00459 * 10 9 7 34 34 H 0.97003 * 120.00783 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.47371 * 155.30249 * 19 9 7 36 36 H 1.08997 * 109.47327 * 35.29793 * 19 9 7 37 37 H 1.08998 * 115.54754 * 29.41290 * 20 19 9 38 38 H 1.08999 * 117.49762 * 0.02562 * 21 20 19 39 39 H 1.09002 * 117.49598 * 145.01920 * 21 20 19 40 40 H 1.09002 * 117.49522 * 214.97692 * 22 20 19 41 41 H 1.09000 * 117.49894 * 359.97438 * 22 20 19 42 42 H 1.07998 * 126.52693 * 179.77378 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.2997 1.4424 -1.0586 6 6 5.6014 1.4418 -0.6624 7 6 6.7845 1.4410 -1.5420 8 8 7.8975 1.3327 -1.0641 9 7 6.6326 1.5602 -2.8759 10 6 7.7960 1.4449 -3.7587 11 6 8.4102 2.8062 -3.9608 12 1 7.9769 3.6708 -3.4800 13 6 9.5245 2.9480 -4.7602 14 7 10.0518 1.8952 -5.3461 15 14 10.2862 4.6352 -5.0101 16 1 11.3124 4.8749 -3.9638 17 1 10.9220 4.6977 -6.3506 18 1 9.2297 5.6743 -4.9145 19 6 5.3042 1.8051 -3.4429 20 6 4.5717 0.4734 -3.6195 21 6 4.2175 0.0457 -5.0452 22 6 3.1180 0.5243 -4.0939 23 6 5.6057 1.4364 0.6984 24 8 4.3227 1.4419 1.0939 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 8.5305 0.7784 -3.3067 33 1 7.4829 1.0411 -4.7216 34 1 10.8360 1.9948 -5.9082 35 1 5.4071 2.2944 -4.4115 36 1 4.7347 2.4465 -2.7704 37 1 4.8431 -0.3098 -2.9118 38 1 4.5067 0.7128 -5.8573 39 1 4.2554 -1.0191 -5.2753 40 1 2.4330 -0.2258 -3.6985 41 1 2.6833 1.5065 -4.2797 42 1 6.4756 1.4311 1.3384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273545161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:40 Heat of formation + Delta-G solvation = -11.546218 kcal Electronic energy + Delta-G solvation = -23875.498478 eV Core-core repulsion = 20436.415925 eV Total energy + Delta-G solvation = -3439.082553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.40489 -40.64732 -38.35046 -36.32836 -36.15852 -35.63622 -34.51451 -31.64045 -29.91573 -28.11450 -27.54205 -25.93655 -23.80987 -23.19685 -23.01101 -22.05848 -21.63977 -20.41201 -18.76363 -18.56576 -17.71940 -17.47541 -17.26486 -16.32259 -16.16664 -15.97205 -15.83570 -15.54298 -14.81272 -14.65392 -14.41349 -14.28255 -14.10333 -13.70600 -13.36234 -12.98059 -12.94847 -12.67389 -12.64686 -12.54746 -12.32246 -12.25977 -12.23043 -11.99814 -11.75749 -11.55225 -11.50686 -11.20422 -11.00530 -10.66933 -10.58142 -10.03027 -9.46291 -8.23672 -6.38929 0.13374 1.08294 1.35739 1.38948 1.48923 1.63151 2.16549 2.31444 2.41284 2.89084 3.05554 3.10827 3.61447 3.84277 4.00081 4.10988 4.12790 4.16933 4.27740 4.35101 4.51545 4.56016 4.64706 4.75263 4.78944 4.82499 4.86977 4.90113 4.96854 5.00164 5.10477 5.16800 5.18189 5.32235 5.34196 5.37192 5.43357 5.52105 5.56385 5.80991 6.02657 6.49086 6.67759 6.71219 7.19110 7.35531 8.83712 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.004436 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.917141 B = 6311.120420 C = 7159.454138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.019 4.019 4 C 0.196 3.804 5 N -0.455 5.455 6 C -0.090 4.090 7 C 0.577 3.423 8 O -0.586 6.586 9 N -0.582 5.582 10 C 0.266 3.734 11 C -0.544 4.544 12 H 0.050 0.950 13 C 0.010 3.990 14 N -0.926 5.926 15 Si 0.969 3.031 16 H -0.278 1.278 17 H -0.272 1.272 18 H -0.264 1.264 19 C 0.153 3.847 20 C -0.147 4.147 21 C -0.198 4.198 22 C -0.131 4.131 23 C 0.019 3.981 24 O -0.194 6.194 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.120 0.880 32 H -0.001 1.001 33 H 0.024 0.976 34 H 0.268 0.732 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.815 -1.944 10.153 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.056 4.056 4 C -0.013 4.013 5 N -0.184 5.184 6 C -0.209 4.209 7 C 0.365 3.635 8 O -0.468 6.468 9 N -0.310 5.310 10 C 0.145 3.855 11 C -0.583 4.583 12 H 0.068 0.932 13 C -0.189 4.189 14 N -0.566 5.566 15 Si 0.793 3.207 16 H -0.204 1.204 17 H -0.197 1.197 18 H -0.188 1.188 19 C 0.031 3.969 20 C -0.166 4.166 21 C -0.236 4.236 22 C -0.168 4.168 23 C -0.055 4.055 24 O -0.080 6.080 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.017 0.983 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -22.332 -2.050 9.607 24.397 hybrid contribution 1.684 0.436 0.264 1.760 sum -20.648 -1.613 9.870 22.943 Atomic orbital electron populations 1.21719 0.93096 1.02559 1.02992 1.21496 0.97611 0.94093 1.02418 1.20476 0.77860 1.00260 1.07033 1.27362 0.97708 0.98494 0.77785 1.71080 0.99679 1.17934 1.29710 1.21617 0.92076 1.13727 0.93481 1.17380 0.86641 0.77069 0.82397 1.90741 1.26770 1.53709 1.75583 1.48028 1.10123 1.67447 1.05425 1.18789 0.82687 0.96113 0.87895 1.21641 1.13166 0.94022 1.29446 0.93165 1.25850 0.96777 1.01352 0.94936 1.70049 1.23098 1.31247 1.32190 0.85393 0.78540 0.79023 0.77718 1.20386 1.19682 1.18825 1.21263 0.80842 0.96212 0.98585 1.22202 0.99566 0.97966 0.96896 1.23154 1.05443 1.01637 0.93322 1.22833 0.89942 1.03151 1.00875 1.25518 0.85596 0.99376 0.95026 1.84392 1.16094 1.69410 1.38103 0.91608 0.92199 0.91426 0.92240 0.91995 0.86556 0.86220 0.98252 0.95761 0.92273 0.91946 0.88479 0.90612 0.89534 0.88946 0.87477 0.87760 0.73743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.40 16 2 C -0.12 -1.37 5.92 30.59 0.18 -1.18 16 3 C -0.02 -0.23 5.84 29.85 0.17 -0.06 16 4 C 0.20 4.39 7.56 88.39 0.67 5.05 16 5 N -0.45 -13.36 6.79 -293.03 -1.99 -15.34 16 6 C -0.09 -3.23 6.55 40.41 0.26 -2.96 16 7 C 0.58 27.19 7.62 86.66 0.66 27.85 16 8 O -0.59 -32.09 16.53 -4.06 -0.07 -32.15 16 9 N -0.58 -27.89 2.47 -830.04 -2.05 -29.94 16 10 C 0.27 15.28 5.10 85.63 0.44 15.72 16 11 C -0.54 -32.86 9.39 25.60 0.24 -32.62 16 12 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 13 C 0.01 0.59 5.46 84.65 0.46 1.06 16 14 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 15 Si 0.97 46.08 29.54 68.60 2.03 48.11 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 19 C 0.15 5.86 5.25 86.38 0.45 6.31 16 20 C -0.15 -4.71 4.40 -10.79 -0.05 -4.76 16 21 C -0.20 -5.63 10.18 30.62 0.31 -5.32 16 22 C -0.13 -2.99 10.25 30.62 0.31 -2.68 16 23 C 0.02 0.54 11.95 67.32 0.80 1.34 16 24 O -0.19 -4.58 10.73 0.37 0.00 -4.58 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.38 8.14 -2.38 -0.02 0.37 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.00 -0.04 7.50 -2.39 -0.02 -0.06 16 33 H 0.02 1.42 8.07 -2.39 -0.02 1.40 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.06 2.48 7.77 -2.38 -0.02 2.46 16 36 H 0.10 3.47 5.89 -2.39 -0.01 3.46 16 37 H 0.08 2.73 8.01 -2.39 -0.02 2.71 16 38 H 0.09 2.57 8.03 -2.39 -0.02 2.55 16 39 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.25 5.72 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -76.24 356.90 4.85 -71.39 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.00 Total: 12.14 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.64 Total: 7.35 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -3.75 Total: -102.26 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.06 Total: -36.73 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -76.24 4.85 -71.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273545161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.844 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds