Wall clock time and date at job start Tue Mar 31 2020 07:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.47143 * 2 1 4 4 O 1.42901 * 109.46951 * 240.00339 * 2 1 3 5 5 C 1.52996 * 109.47387 * 120.00260 * 2 1 3 6 6 C 1.53002 * 109.47242 * 185.00209 * 5 2 1 7 7 N 1.46503 * 109.47033 * 179.97438 * 6 5 2 8 8 C 1.34775 * 119.99955 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99839 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00049 * 180.02562 * 8 7 6 11 11 C 1.39238 * 120.00064 * 184.28658 * 10 8 7 12 12 C 1.39477 * 119.83512 * 324.70584 * 11 10 8 13 13 C 1.36370 * 120.17106 * 180.29495 * 12 11 10 14 14 C 1.40873 * 119.82515 * 359.47762 * 13 12 11 15 15 C 1.41157 * 120.16217 * 180.25396 * 14 13 12 16 16 H 1.08003 * 119.99672 * 215.01794 * 15 14 13 17 17 C 1.39893 * 120.00333 * 35.01428 * 15 14 13 18 18 N 1.30880 * 119.99961 * 355.54010 * 17 15 14 19 19 Si 1.86802 * 120.00211 * 175.54551 * 17 15 14 20 20 H 1.48501 * 109.47030 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47417 * 119.99955 * 19 17 15 22 22 H 1.48499 * 109.46704 * 240.00023 * 19 17 15 23 23 C 1.40866 * 119.67271 * 0.51904 * 14 13 12 24 24 C 1.36373 * 119.82749 * 359.73332 * 23 14 13 25 25 H 1.09002 * 109.47046 * 299.99918 * 1 2 3 26 26 H 1.09005 * 109.46855 * 59.99894 * 1 2 3 27 27 H 1.08994 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46945 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47053 * 300.00228 * 3 2 1 30 30 H 1.08999 * 109.46364 * 60.00062 * 3 2 1 31 31 H 0.96697 * 114.00207 * 60.00314 * 4 2 1 32 32 H 1.08995 * 109.47115 * 64.99834 * 5 2 1 33 33 H 1.09003 * 109.46653 * 305.00078 * 5 2 1 34 34 H 1.08995 * 109.47372 * 59.99783 * 6 5 2 35 35 H 1.09000 * 109.46476 * 299.99536 * 6 5 2 36 36 H 0.96997 * 119.99768 * 0.02562 * 7 6 5 37 37 H 0.96999 * 119.99950 * 4.28545 * 10 8 7 38 38 H 1.08002 * 119.91733 * 0.02562 * 12 11 10 39 39 H 1.07999 * 120.09068 * 179.69917 * 13 12 11 40 40 H 0.96992 * 120.00602 * 179.97438 * 18 17 15 41 41 H 1.08005 * 120.08491 * 179.70716 * 23 14 13 42 42 H 1.08006 * 119.91358 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 7 4.0532 -1.3034 2.5101 8 6 5.3741 -1.3395 2.7753 9 8 6.1605 -0.7997 2.0213 10 7 5.8234 -1.9748 3.8757 11 6 7.1775 -1.9365 4.1977 12 6 8.1329 -1.9428 3.1815 13 6 9.4610 -1.9115 3.4892 14 6 9.8669 -1.8615 4.8372 15 6 11.2397 -1.8235 5.1637 16 1 11.5981 -2.3258 6.0500 17 6 12.1360 -1.1351 4.3391 18 7 11.7175 -0.6007 3.2201 19 14 13.9302 -0.9789 4.8351 20 1 14.1461 -1.6648 6.1343 21 1 14.7873 -1.6044 3.7961 22 1 14.2832 0.4572 4.9693 23 6 8.8962 -1.8554 5.8580 24 6 7.5718 -1.8923 5.5349 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7211 -0.2700 -1.9980 32 1 1.7518 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.8533 0.4370 1.3573 35 1 3.9995 -1.0728 0.4259 36 1 3.4259 -1.7350 3.1110 37 1 5.2034 -2.4588 4.4434 38 1 7.8201 -1.9771 2.1483 39 1 10.1997 -1.9214 2.7014 40 1 12.3387 -0.1231 2.6485 41 1 9.2000 -1.8219 6.8939 42 1 6.8263 -1.8872 6.3164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274827856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:15 Heat of formation + Delta-G solvation = -67.572508 kcal Electronic energy + Delta-G solvation = -22578.724773 eV Core-core repulsion = 19137.212738 eV Total energy + Delta-G solvation = -3441.512035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.87709 -38.82206 -37.34744 -35.01766 -34.22128 -33.00111 -32.56430 -29.63177 -29.33597 -28.38707 -27.70837 -24.95042 -23.37005 -21.37833 -20.95507 -20.61904 -19.81010 -17.83175 -17.20774 -16.95490 -16.53723 -15.74173 -15.29902 -14.94941 -14.81631 -14.43786 -13.96374 -13.85430 -13.73950 -13.44234 -12.91767 -12.64295 -12.60679 -12.13706 -12.10680 -11.99426 -11.78654 -11.67856 -11.38982 -11.35848 -11.10275 -10.98074 -10.82999 -10.43085 -10.24886 -9.89367 -9.79454 -9.50963 -9.01892 -8.77470 -8.65708 -7.42949 -6.77430 -6.51066 -4.24631 2.75807 3.09182 3.13719 3.16074 3.19661 3.24900 3.81191 3.89193 4.05396 4.42811 4.44396 4.61824 4.80137 4.82052 5.02769 5.10075 5.19717 5.32100 5.42026 5.45932 5.69155 5.73303 5.74804 5.81610 6.04780 6.07820 6.20934 6.46177 6.69895 6.90433 6.94665 7.13426 7.24266 7.37443 7.38933 7.48364 7.74065 7.92815 8.11819 8.18379 8.38782 8.57894 8.76703 9.02061 9.03590 9.21195 10.40201 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032490 B = 0.002667 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.603925 B =10497.568507 C =11073.340314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.130 3.870 3 C -0.186 4.186 4 O -0.557 6.557 5 C -0.117 4.117 6 C 0.141 3.859 7 N -0.755 5.755 8 C 0.693 3.307 9 O -0.574 6.574 10 N -0.670 5.670 11 C 0.027 3.973 12 C -0.094 4.094 13 C -0.142 4.142 14 C 0.097 3.903 15 C -0.464 4.464 16 H 0.075 0.925 17 C 0.068 3.932 18 N -0.809 5.809 19 Si 0.914 3.086 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.203 4.203 24 C -0.118 4.118 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.376 0.624 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.277 0.723 41 H 0.096 0.904 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.553 1.044 -4.546 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.089 3.911 3 C -0.243 4.243 4 O -0.363 6.363 5 C -0.155 4.155 6 C 0.017 3.983 7 N -0.412 5.412 8 C 0.394 3.606 9 O -0.450 6.450 10 N -0.316 5.316 11 C -0.066 4.066 12 C -0.115 4.115 13 C -0.163 4.163 14 C 0.095 3.905 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.147 4.147 18 N -0.436 5.436 19 Si 0.739 3.261 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.223 4.223 24 C -0.138 4.138 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.223 0.777 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.223 0.777 37 H 0.223 0.777 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.461 1.325 -5.012 20.140 hybrid contribution -0.220 0.276 0.379 0.518 sum -19.681 1.601 -4.634 20.283 Atomic orbital electron populations 1.22492 0.95622 1.02772 1.02618 1.21085 0.92379 0.91486 0.86135 1.22616 1.03235 0.95968 1.02525 1.86610 1.77191 1.56917 1.15608 1.21768 0.95646 1.01824 0.96250 1.21170 0.92289 0.97381 0.87503 1.45139 1.06028 1.61547 1.28447 1.16030 0.82083 0.79927 0.82582 1.90936 1.54232 1.50642 1.49174 1.42111 1.08536 1.54278 1.26689 1.17097 0.80378 1.15886 0.93232 1.20688 0.92890 1.00362 0.97527 1.21308 0.93885 1.03417 0.97642 1.17724 0.93045 0.88546 0.91227 1.19483 0.91987 1.29737 1.08308 0.90696 1.25883 1.00737 0.94089 0.93953 1.69806 1.36329 1.27668 1.09844 0.86174 0.81840 0.78580 0.79484 1.18681 1.20056 1.20082 1.20669 0.91976 1.11637 0.98057 1.20047 0.95933 1.04898 0.92940 0.91507 0.92211 0.91740 0.90774 0.92319 0.91455 0.77719 0.90541 0.90129 0.91632 0.90995 0.77726 0.77703 0.87316 0.85245 0.91228 0.88597 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 8.82 37.16 0.33 -0.71 16 2 C 0.13 1.01 1.09 -90.62 -0.10 0.91 16 3 C -0.19 -1.41 8.33 37.16 0.31 -1.10 16 4 O -0.56 -5.06 12.51 -35.23 -0.44 -5.50 16 5 C -0.12 -1.01 4.62 -26.73 -0.12 -1.13 16 6 C 0.14 1.77 5.08 -4.04 -0.02 1.75 16 7 N -0.75 -10.21 5.56 -65.23 -0.36 -10.57 16 8 C 0.69 13.20 8.40 -86.92 -0.73 12.47 16 9 O -0.57 -13.78 13.76 5.29 0.07 -13.71 16 10 N -0.67 -12.34 5.31 -14.10 -0.07 -12.42 16 11 C 0.03 0.62 6.31 -83.57 -0.53 0.09 16 12 C -0.09 -2.46 8.61 -39.79 -0.34 -2.80 16 13 C -0.14 -3.96 8.61 -39.26 -0.34 -4.30 16 14 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 15 C -0.46 -12.70 9.02 -37.86 -0.34 -13.04 16 16 H 0.07 1.96 7.85 -52.48 -0.41 1.54 16 17 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 18 N -0.81 -22.23 10.61 55.54 0.59 -21.64 16 19 Si 0.91 19.61 29.56 -169.99 -5.03 14.59 16 20 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.20 -5.04 9.74 -39.26 -0.38 -5.43 16 24 C -0.12 -2.64 9.90 -39.79 -0.39 -3.04 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.71 6.35 -51.93 -0.33 0.38 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.38 1.97 9.05 45.56 0.41 2.38 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.89 6.35 -51.93 -0.33 0.56 16 35 H 0.07 1.08 7.82 -51.93 -0.41 0.67 16 36 H 0.39 3.85 8.49 -40.82 -0.35 3.50 16 37 H 0.39 5.50 8.83 -40.82 -0.36 5.14 16 38 H 0.11 2.89 6.22 -52.49 -0.33 2.56 16 39 H 0.13 3.76 6.15 -52.49 -0.32 3.44 16 40 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 41 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 42 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -33.83 346.64 -8.73 -42.55 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.36 Total: 14.00 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -3.35 Total: -12.53 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.15 Total: -44.63 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.37 Total: -19.21 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.83 -8.73 -42.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274827856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.018 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds