Wall clock time and date at job start Tue Mar 31 2020 07:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.47143 * 2 1 4 4 O 1.42901 * 109.46951 * 240.00339 * 2 1 3 5 5 C 1.52996 * 109.47387 * 120.00260 * 2 1 3 6 6 C 1.53002 * 109.47242 * 185.00209 * 5 2 1 7 7 N 1.46503 * 109.47033 * 179.97438 * 6 5 2 8 8 C 1.34775 * 119.99955 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99839 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00049 * 180.02562 * 8 7 6 11 11 C 1.39238 * 120.00064 * 184.28658 * 10 8 7 12 12 C 1.39477 * 119.83512 * 324.70584 * 11 10 8 13 13 C 1.36370 * 120.17106 * 180.29495 * 12 11 10 14 14 C 1.40873 * 119.82515 * 359.47762 * 13 12 11 15 15 C 1.41157 * 120.16217 * 180.25396 * 14 13 12 16 16 H 1.08003 * 119.99672 * 215.01794 * 15 14 13 17 17 C 1.39893 * 120.00333 * 35.01428 * 15 14 13 18 18 N 1.30880 * 119.99961 * 355.54010 * 17 15 14 19 19 Si 1.86802 * 120.00211 * 175.54551 * 17 15 14 20 20 H 1.48501 * 109.47030 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47417 * 119.99955 * 19 17 15 22 22 H 1.48499 * 109.46704 * 240.00023 * 19 17 15 23 23 C 1.40866 * 119.67271 * 0.51904 * 14 13 12 24 24 C 1.36373 * 119.82749 * 359.73332 * 23 14 13 25 25 H 1.09002 * 109.47046 * 299.99918 * 1 2 3 26 26 H 1.09005 * 109.46855 * 59.99894 * 1 2 3 27 27 H 1.08994 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46945 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47053 * 300.00228 * 3 2 1 30 30 H 1.08999 * 109.46364 * 60.00062 * 3 2 1 31 31 H 0.96697 * 114.00207 * 60.00314 * 4 2 1 32 32 H 1.08995 * 109.47115 * 64.99834 * 5 2 1 33 33 H 1.09003 * 109.46653 * 305.00078 * 5 2 1 34 34 H 1.08995 * 109.47372 * 59.99783 * 6 5 2 35 35 H 1.09000 * 109.46476 * 299.99536 * 6 5 2 36 36 H 0.96997 * 119.99768 * 0.02562 * 7 6 5 37 37 H 0.96999 * 119.99950 * 4.28545 * 10 8 7 38 38 H 1.08002 * 119.91733 * 0.02562 * 12 11 10 39 39 H 1.07999 * 120.09068 * 179.69917 * 13 12 11 40 40 H 0.96992 * 120.00602 * 179.97438 * 18 17 15 41 41 H 1.08005 * 120.08491 * 179.70716 * 23 14 13 42 42 H 1.08006 * 119.91358 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 7 4.0532 -1.3034 2.5101 8 6 5.3741 -1.3395 2.7753 9 8 6.1605 -0.7997 2.0213 10 7 5.8234 -1.9748 3.8757 11 6 7.1775 -1.9365 4.1977 12 6 8.1329 -1.9428 3.1815 13 6 9.4610 -1.9115 3.4892 14 6 9.8669 -1.8615 4.8372 15 6 11.2397 -1.8235 5.1637 16 1 11.5981 -2.3258 6.0500 17 6 12.1360 -1.1351 4.3391 18 7 11.7175 -0.6007 3.2201 19 14 13.9302 -0.9789 4.8351 20 1 14.1461 -1.6648 6.1343 21 1 14.7873 -1.6044 3.7961 22 1 14.2832 0.4572 4.9693 23 6 8.8962 -1.8554 5.8580 24 6 7.5718 -1.8923 5.5349 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7211 -0.2700 -1.9980 32 1 1.7518 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.8533 0.4370 1.3573 35 1 3.9995 -1.0728 0.4259 36 1 3.4259 -1.7350 3.1110 37 1 5.2034 -2.4588 4.4434 38 1 7.8201 -1.9771 2.1483 39 1 10.1997 -1.9214 2.7014 40 1 12.3387 -0.1231 2.6485 41 1 9.2000 -1.8219 6.8939 42 1 6.8263 -1.8872 6.3164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274827856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:15 Heat of formation + Delta-G solvation = -92.932707 kcal Electronic energy + Delta-G solvation = -22579.824474 eV Core-core repulsion = 19137.212738 eV Total energy + Delta-G solvation = -3442.611736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41957 -39.66061 -39.07273 -36.38646 -35.88916 -34.69134 -33.54943 -31.41600 -30.98368 -29.73500 -28.26296 -26.75173 -24.49243 -23.18887 -22.71888 -21.76373 -21.05245 -19.33024 -19.18161 -18.24281 -17.50747 -17.07380 -16.80905 -16.33833 -15.75579 -15.72911 -15.59944 -15.22987 -14.77740 -14.63678 -14.48840 -14.12319 -13.91553 -13.62891 -13.29984 -13.19685 -12.87224 -12.75438 -12.64823 -12.63353 -12.47474 -12.30890 -12.21916 -11.80811 -11.67906 -11.60228 -11.30109 -10.91416 -10.85897 -10.53908 -10.06759 -9.42437 -8.68332 -8.46891 -6.29869 0.87915 1.15814 1.39562 1.47334 1.56043 1.77439 2.20412 2.26190 2.85037 3.31384 3.40818 3.72093 3.75272 3.92524 4.06503 4.22715 4.39039 4.46443 4.51193 4.61929 4.71592 4.81529 4.90538 4.97203 5.04570 5.06046 5.13863 5.18522 5.23640 5.25135 5.36385 5.39671 5.45023 5.51087 5.73005 5.82852 6.11966 6.17703 6.22509 6.40060 6.74228 6.92365 6.98942 7.05908 7.19065 7.68044 8.46507 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032490 B = 0.002667 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.603925 B =10497.568507 C =11073.340314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.127 3.873 3 C -0.185 4.185 4 O -0.582 6.582 5 C -0.109 4.109 6 C 0.142 3.858 7 N -0.728 5.728 8 C 0.688 3.312 9 O -0.628 6.628 10 N -0.657 5.657 11 C 0.041 3.959 12 C -0.111 4.111 13 C -0.167 4.167 14 C 0.063 3.937 15 C -0.495 4.495 16 H 0.080 0.920 17 C 0.020 3.980 18 N -0.850 5.850 19 Si 0.992 3.008 20 H -0.253 1.253 21 H -0.269 1.269 22 H -0.270 1.270 23 C -0.207 4.207 24 C -0.108 4.108 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.390 0.610 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.413 0.587 37 H 0.416 0.584 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.281 0.719 41 H 0.115 0.885 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.952 1.088 -2.777 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.086 3.914 3 C -0.242 4.242 4 O -0.390 6.390 5 C -0.147 4.147 6 C 0.018 3.982 7 N -0.385 5.385 8 C 0.389 3.611 9 O -0.509 6.509 10 N -0.306 5.306 11 C -0.053 4.053 12 C -0.131 4.131 13 C -0.188 4.188 14 C 0.060 3.940 15 C -0.526 4.526 16 H 0.098 0.902 17 C -0.191 4.191 18 N -0.478 5.478 19 Si 0.813 3.187 20 H -0.176 1.176 21 H -0.194 1.194 22 H -0.195 1.195 23 C -0.227 4.227 24 C -0.129 4.129 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.239 0.761 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.250 0.750 37 H 0.254 0.746 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.966 1.336 -3.222 22.242 hybrid contribution 0.331 0.253 -0.235 0.478 sum -21.636 1.589 -3.457 21.968 Atomic orbital electron populations 1.22416 0.93507 1.03058 1.03801 1.21181 0.93830 0.91025 0.85338 1.22601 1.01442 0.96415 1.03767 1.86573 1.77871 1.57750 1.16835 1.21789 0.92153 1.02752 0.98001 1.21215 0.95099 0.96113 0.85739 1.44906 1.04305 1.60516 1.28800 1.16288 0.83357 0.79494 0.81993 1.90918 1.56204 1.52834 1.50910 1.41844 1.07207 1.54513 1.27034 1.17138 0.81931 1.13320 0.92958 1.20671 0.93150 1.01525 0.97771 1.21163 0.94208 1.05757 0.97640 1.18071 0.94302 0.89927 0.91671 1.19775 0.92664 1.31023 1.09181 0.90166 1.26876 1.05544 0.93160 0.93543 1.69934 1.38121 1.28621 1.11113 0.85010 0.75540 0.78707 0.79449 1.17610 1.19353 1.19512 1.20962 0.92610 1.10798 0.98343 1.20415 0.96118 1.02722 0.93608 0.90315 0.91109 0.91865 0.93492 0.90933 0.90435 0.76054 0.89973 0.87610 0.92788 0.93937 0.74982 0.74626 0.88895 0.87923 0.90868 0.86710 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.82 71.98 0.63 -0.85 16 2 C 0.13 1.75 1.09 -10.79 -0.01 1.74 16 3 C -0.18 -2.58 8.33 71.98 0.60 -1.98 16 4 O -0.58 -10.11 12.51 -148.98 -1.86 -11.98 16 5 C -0.11 -1.64 4.62 30.59 0.14 -1.50 16 6 C 0.14 3.51 5.08 86.38 0.44 3.95 16 7 N -0.73 -18.48 5.56 -478.54 -2.66 -21.14 16 8 C 0.69 25.77 8.40 179.06 1.50 27.28 16 9 O -0.63 -31.10 13.76 -3.97 -0.05 -31.15 16 10 N -0.66 -22.95 5.31 -316.79 -1.68 -24.63 16 11 C 0.04 1.84 6.31 38.56 0.24 2.09 16 12 C -0.11 -5.98 8.61 22.13 0.19 -5.79 16 13 C -0.17 -9.80 8.61 22.48 0.19 -9.60 16 14 C 0.06 3.55 5.55 -21.27 -0.12 3.43 16 15 C -0.50 -27.81 9.02 23.39 0.21 -27.60 16 16 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 17 C 0.02 1.05 5.42 85.24 0.46 1.52 16 18 N -0.85 -48.83 10.61 21.82 0.23 -48.60 16 19 Si 0.99 40.83 29.56 68.60 2.03 42.86 16 20 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 C -0.21 -10.10 9.74 22.48 0.22 -9.88 16 24 C -0.11 -4.61 9.90 22.13 0.22 -4.39 16 25 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.91 6.35 -2.39 -0.02 0.90 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.39 3.76 9.05 -74.06 -0.67 3.09 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.48 6.35 -2.39 -0.02 1.47 16 35 H 0.04 1.31 7.82 -2.39 -0.02 1.30 16 36 H 0.41 6.78 8.49 -92.71 -0.79 5.99 16 37 H 0.42 10.19 8.83 -92.71 -0.82 9.37 16 38 H 0.09 5.24 6.22 -2.91 -0.02 5.22 16 39 H 0.10 6.44 6.15 -2.91 -0.02 6.42 16 40 H 0.28 14.78 8.30 -92.71 -0.77 14.02 16 41 H 0.11 5.07 8.06 -2.91 -0.02 5.04 16 42 H 0.14 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -78.17 346.64 -0.29 -78.47 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: -1.22 Total: 37.76 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 4.93 Total: -21.59 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -4.11 Total: -94.37 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.92 Total: -43.13 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -78.17 -0.29 -78.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274827856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.467 kcal (2) G-P(sol) polarization free energy of solvation -78.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds