Wall clock time and date at job start Tue Mar 31 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47341 * 2 1 4 4 C 1.53004 * 109.46754 * 240.00041 * 2 1 3 5 5 C 1.53001 * 109.47261 * 120.00310 * 2 1 3 6 6 N 1.46500 * 109.47014 * 64.93273 * 5 2 1 7 7 C 1.46499 * 120.00288 * 273.60642 * 6 5 2 8 8 C 1.50703 * 109.46911 * 262.66589 * 7 6 5 9 9 H 1.07990 * 120.00389 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99792 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00001 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00028 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47194 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46899 * 119.99801 * 12 10 8 15 15 H 1.48500 * 109.47194 * 239.99710 * 12 10 8 16 16 C 1.34777 * 120.00178 * 93.60991 * 6 5 2 17 17 O 1.21521 * 119.99818 * 3.48636 * 16 6 5 18 18 C 1.48154 * 120.00457 * 183.49068 * 16 6 5 19 19 C 1.39157 * 119.69248 * 173.01728 * 18 16 6 20 20 C 1.38745 * 119.18726 * 179.97438 * 19 18 16 21 21 C 1.38372 * 118.55624 * 359.73268 * 20 19 18 22 22 C 1.39245 * 119.30500 * 0.51230 * 21 20 19 23 23 O 1.35672 * 119.61545 * 179.75492 * 22 21 20 24 24 N 1.31925 * 120.76811 * 359.47595 * 22 21 20 25 25 H 1.08999 * 109.47277 * 299.99458 * 1 2 3 26 26 H 1.08997 * 109.47260 * 60.00263 * 1 2 3 27 27 H 1.09004 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47251 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47076 * 300.00668 * 3 2 1 30 30 H 1.08999 * 109.46492 * 60.00061 * 3 2 1 31 31 H 1.08995 * 109.47606 * 305.06215 * 4 2 1 32 32 H 1.09003 * 109.47012 * 65.07152 * 4 2 1 33 33 H 1.09004 * 109.46759 * 185.06737 * 4 2 1 34 34 H 1.08994 * 109.46952 * 304.93720 * 5 2 1 35 35 H 1.09001 * 109.47247 * 184.93246 * 5 2 1 36 36 H 1.09001 * 109.47128 * 22.66022 * 7 6 5 37 37 H 1.08997 * 109.47199 * 142.66135 * 7 6 5 38 38 H 0.97002 * 119.99853 * 180.02562 * 11 10 8 39 39 H 1.08001 * 120.40888 * 359.97438 * 19 18 16 40 40 H 1.08001 * 120.71836 * 179.97438 * 20 19 18 41 41 H 1.08001 * 120.34455 * 180.27814 * 21 20 19 42 42 H 0.96704 * 113.99746 * 269.72650 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.6511 -2.1326 1.1912 7 6 0.3396 -2.5521 1.6913 8 6 0.4816 -3.0729 3.0984 9 1 1.4518 -3.0901 3.5724 10 6 -0.6271 -3.5275 3.7804 11 7 -1.8086 -3.5061 3.2033 12 14 -0.4509 -4.1737 5.5242 13 1 0.9719 -4.0910 5.9414 14 1 -1.2836 -3.3552 6.4418 15 1 -0.9011 -5.5878 5.5759 16 6 2.4998 -3.0450 0.6778 17 8 3.6116 -2.7077 0.3214 18 6 2.0775 -4.4591 0.5478 19 6 2.8994 -5.3659 -0.1145 20 6 2.4939 -6.6877 -0.2297 21 6 1.2823 -7.0587 0.3264 22 6 0.5061 -6.0993 0.9713 23 8 -0.6851 -6.4551 1.5145 24 7 0.9181 -4.8495 1.0651 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6045 -1.7194 -1.2959 32 1 1.7526 -0.1576 -2.1370 33 1 3.1262 -0.8006 -1.2051 34 1 1.6063 -0.2611 2.1369 35 1 3.1264 -0.6454 1.2945 36 1 -0.3407 -1.7005 1.6861 37 1 -0.0587 -3.3392 1.0510 38 1 -2.5887 -3.8256 3.6833 39 1 3.8415 -5.0447 -0.5337 40 1 3.1122 -7.4121 -0.7389 41 1 0.9406 -8.0809 0.2576 42 1 -1.4348 -6.3678 0.9099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279435388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:30 Heat of formation + Delta-G solvation = -23.801560 kcal Electronic energy + Delta-G solvation = -25000.184057 eV Core-core repulsion = 21560.570073 eV Total energy + Delta-G solvation = -3439.613985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30436 -38.93453 -36.86464 -36.10640 -34.33293 -32.18263 -31.94402 -29.90124 -27.59117 -26.93150 -26.74466 -25.93871 -23.70753 -22.68937 -22.45299 -19.74491 -18.31141 -17.75518 -16.82073 -16.38928 -15.94934 -15.54149 -15.10196 -14.92355 -14.63780 -14.24854 -13.99699 -13.52227 -13.35865 -13.11162 -12.59740 -12.30366 -12.24248 -12.04741 -11.80869 -11.74088 -11.46925 -11.19561 -11.01268 -10.99765 -10.87337 -10.72963 -10.49369 -10.33706 -10.18367 -9.98919 -9.56533 -9.51701 -9.30088 -8.52335 -8.44291 -7.94716 -7.49632 -5.90796 -3.87526 1.11427 1.62142 3.34173 3.37000 3.44794 3.48661 3.84336 4.18919 4.38602 4.55889 4.97429 5.14962 5.21308 5.24747 5.34985 5.39922 5.42589 5.48416 5.77631 5.88919 5.91284 5.91768 5.95022 6.13273 6.19049 6.22387 6.29927 6.32696 6.38527 6.43487 6.52304 6.57941 6.74005 6.80735 6.81868 7.00073 7.61517 7.82498 7.99319 8.08066 8.36222 8.41680 8.47903 8.97980 9.13406 9.72308 11.17696 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.008091 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.066475 B = 3459.754070 C = 4970.201179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.132 4.132 5 C 0.124 3.876 6 N -0.568 5.568 7 C 0.225 3.775 8 C -0.499 4.499 9 H 0.047 0.953 10 C 0.077 3.923 11 N -0.886 5.886 12 Si 0.882 3.118 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.284 1.284 16 C 0.565 3.435 17 O -0.569 6.569 18 C 0.105 3.895 19 C -0.137 4.137 20 C -0.083 4.083 21 C -0.180 4.180 22 C 0.301 3.699 23 O -0.468 6.468 24 N -0.397 5.397 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.257 0.743 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -0.787 -9.380 10.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.193 4.193 4 C -0.189 4.189 5 C 0.001 3.999 6 N -0.295 5.295 7 C 0.106 3.894 8 C -0.538 4.538 9 H 0.065 0.935 10 C -0.125 4.125 11 N -0.525 5.525 12 Si 0.711 3.289 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.210 1.210 16 C 0.352 3.648 17 O -0.451 6.451 18 C -0.034 4.034 19 C -0.158 4.158 20 C -0.109 4.109 21 C -0.202 4.202 22 C 0.121 3.879 23 O -0.274 6.274 24 N -0.117 5.117 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.772 -0.168 -8.560 9.356 hybrid contribution 0.026 -1.108 0.514 1.222 sum 3.798 -1.276 -8.046 8.989 Atomic orbital electron populations 1.22011 0.94264 1.03015 1.00727 1.20935 0.96271 0.95039 0.96209 1.21784 1.00755 0.95379 1.01405 1.21801 1.01464 0.99748 0.95912 1.21467 1.00267 0.81430 0.96758 1.48209 1.19128 1.05773 1.56371 1.20257 0.77077 0.96496 0.95567 1.21238 0.93665 1.40936 0.97956 0.93460 1.24640 0.95219 0.95454 0.97223 1.69892 0.98479 1.47361 1.36784 0.86704 0.77797 0.78803 0.85597 1.20319 1.21392 1.21048 1.17814 0.84399 0.84261 0.78347 1.90661 1.20776 1.80457 1.53189 1.21082 0.90809 0.95192 0.96292 1.22021 1.00767 0.93185 0.99861 1.21311 0.95564 0.95776 0.98243 1.22306 0.97052 1.01072 0.99732 1.19496 0.88858 0.88116 0.91443 1.84849 1.14777 1.85908 1.41860 1.68392 1.13869 1.16683 1.12794 0.92663 0.93767 0.91180 0.92809 0.92915 0.92700 0.93155 0.93802 0.92091 0.90518 0.90745 0.95031 0.90203 0.93345 0.84034 0.84628 0.84812 0.74904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.37 37.16 0.27 -2.04 16 2 C -0.08 -1.32 0.85 -154.51 -0.13 -1.45 16 3 C -0.14 -1.77 8.47 37.16 0.31 -1.45 16 4 C -0.13 -2.11 7.24 37.16 0.27 -1.84 16 5 C 0.12 2.32 4.59 -4.04 -0.02 2.30 16 6 N -0.57 -12.15 1.98 -176.06 -0.35 -12.50 16 7 C 0.22 5.40 3.60 -5.19 -0.02 5.38 16 8 C -0.50 -13.43 7.97 -34.44 -0.27 -13.71 16 9 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 10 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 11 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 12 Si 0.88 21.98 29.54 -169.99 -5.02 16.96 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 16 C 0.56 12.17 6.03 -12.19 -0.07 12.10 16 17 O -0.57 -12.52 14.59 5.35 0.08 -12.45 16 18 C 0.11 2.14 6.62 -83.03 -0.55 1.59 16 19 C -0.14 -2.28 9.62 -39.05 -0.38 -2.65 16 20 C -0.08 -1.14 10.16 -39.34 -0.40 -1.54 16 21 C -0.18 -2.66 10.05 -39.16 -0.39 -3.05 16 22 C 0.30 5.67 7.74 -17.14 -0.13 5.54 16 23 O -0.47 -8.73 13.56 -18.72 -0.25 -8.98 16 24 N -0.40 -8.55 5.01 -9.88 -0.05 -8.60 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.30 5.75 -51.93 -0.30 1.00 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.89 6.83 -51.93 -0.35 0.54 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.02 7.43 -51.93 -0.39 0.64 16 34 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 35 H 0.07 1.40 7.27 -51.93 -0.38 1.02 16 36 H 0.03 0.79 5.92 -51.93 -0.31 0.48 16 37 H 0.08 2.01 5.24 -52.32 -0.27 1.74 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.14 2.17 7.65 -52.49 -0.40 1.77 16 40 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.39 5.52 9.06 45.56 0.41 5.94 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -31.07 339.41 -6.69 -37.76 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.33 Total: 5.19 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.61 Total: 1.15 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.34 Total: -44.74 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.18 Total: -21.43 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.07 -6.69 -37.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279435388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.954 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds