Wall clock time and date at job start Tue Mar 31 2020 07:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47341 * 2 1 4 4 C 1.53004 * 109.46754 * 240.00041 * 2 1 3 5 5 C 1.53001 * 109.47261 * 120.00310 * 2 1 3 6 6 N 1.46500 * 109.47014 * 64.93273 * 5 2 1 7 7 C 1.46499 * 120.00288 * 273.60642 * 6 5 2 8 8 C 1.50703 * 109.46911 * 262.66589 * 7 6 5 9 9 H 1.07990 * 120.00389 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99792 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00001 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00028 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47194 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46899 * 119.99801 * 12 10 8 15 15 H 1.48500 * 109.47194 * 239.99710 * 12 10 8 16 16 C 1.34777 * 120.00178 * 93.60991 * 6 5 2 17 17 O 1.21521 * 119.99818 * 3.48636 * 16 6 5 18 18 C 1.48154 * 120.00457 * 183.49068 * 16 6 5 19 19 C 1.39157 * 119.69248 * 173.01728 * 18 16 6 20 20 C 1.38745 * 119.18726 * 179.97438 * 19 18 16 21 21 C 1.38372 * 118.55624 * 359.73268 * 20 19 18 22 22 C 1.39245 * 119.30500 * 0.51230 * 21 20 19 23 23 O 1.35672 * 119.61545 * 179.75492 * 22 21 20 24 24 N 1.31925 * 120.76811 * 359.47595 * 22 21 20 25 25 H 1.08999 * 109.47277 * 299.99458 * 1 2 3 26 26 H 1.08997 * 109.47260 * 60.00263 * 1 2 3 27 27 H 1.09004 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47251 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47076 * 300.00668 * 3 2 1 30 30 H 1.08999 * 109.46492 * 60.00061 * 3 2 1 31 31 H 1.08995 * 109.47606 * 305.06215 * 4 2 1 32 32 H 1.09003 * 109.47012 * 65.07152 * 4 2 1 33 33 H 1.09004 * 109.46759 * 185.06737 * 4 2 1 34 34 H 1.08994 * 109.46952 * 304.93720 * 5 2 1 35 35 H 1.09001 * 109.47247 * 184.93246 * 5 2 1 36 36 H 1.09001 * 109.47128 * 22.66022 * 7 6 5 37 37 H 1.08997 * 109.47199 * 142.66135 * 7 6 5 38 38 H 0.97002 * 119.99853 * 180.02562 * 11 10 8 39 39 H 1.08001 * 120.40888 * 359.97438 * 19 18 16 40 40 H 1.08001 * 120.71836 * 179.97438 * 20 19 18 41 41 H 1.08001 * 120.34455 * 180.27814 * 21 20 19 42 42 H 0.96704 * 113.99746 * 269.72650 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.6511 -2.1326 1.1912 7 6 0.3396 -2.5521 1.6913 8 6 0.4816 -3.0729 3.0984 9 1 1.4518 -3.0901 3.5724 10 6 -0.6271 -3.5275 3.7804 11 7 -1.8086 -3.5061 3.2033 12 14 -0.4509 -4.1737 5.5242 13 1 0.9719 -4.0910 5.9414 14 1 -1.2836 -3.3552 6.4418 15 1 -0.9011 -5.5878 5.5759 16 6 2.4998 -3.0450 0.6778 17 8 3.6116 -2.7077 0.3214 18 6 2.0775 -4.4591 0.5478 19 6 2.8994 -5.3659 -0.1145 20 6 2.4939 -6.6877 -0.2297 21 6 1.2823 -7.0587 0.3264 22 6 0.5061 -6.0993 0.9713 23 8 -0.6851 -6.4551 1.5145 24 7 0.9181 -4.8495 1.0651 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6045 -1.7194 -1.2959 32 1 1.7526 -0.1576 -2.1370 33 1 3.1262 -0.8006 -1.2051 34 1 1.6063 -0.2611 2.1369 35 1 3.1264 -0.6454 1.2945 36 1 -0.3407 -1.7005 1.6861 37 1 -0.0587 -3.3392 1.0510 38 1 -2.5887 -3.8256 3.6833 39 1 3.8415 -5.0447 -0.5337 40 1 3.1122 -7.4121 -0.7389 41 1 0.9406 -8.0809 0.2576 42 1 -1.4348 -6.3678 0.9099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279435388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:29 Heat of formation + Delta-G solvation = -44.339748 kcal Electronic energy + Delta-G solvation = -25001.074660 eV Core-core repulsion = 21560.570073 eV Total energy + Delta-G solvation = -3440.504587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.76105 -40.40954 -38.28654 -37.53785 -36.00962 -34.13219 -33.31301 -31.26829 -29.40042 -28.19082 -28.06541 -27.47795 -25.29021 -24.23966 -23.99758 -21.20425 -19.66428 -19.22912 -18.64081 -18.12938 -17.34682 -16.93661 -16.59785 -16.51089 -16.35153 -15.92297 -15.31899 -14.92187 -14.76449 -14.50782 -14.18304 -13.99491 -13.69099 -13.50929 -13.14720 -13.01544 -12.98593 -12.79100 -12.68555 -12.49913 -12.46569 -12.31074 -12.10526 -11.90843 -11.70010 -11.51627 -11.40352 -11.06771 -10.81448 -10.41246 -9.88620 -9.56618 -9.20313 -7.99880 -6.01880 -0.23835 0.36863 1.34985 1.39411 1.45924 1.84869 2.30582 2.50496 2.83778 2.95786 3.35268 3.60916 3.89323 3.91068 3.98639 4.08595 4.14314 4.18695 4.48700 4.58352 4.62401 4.68403 4.77508 4.83477 4.90430 4.94763 5.03419 5.07307 5.09853 5.14903 5.17190 5.23570 5.30570 5.49417 5.54181 5.57104 5.65447 5.96567 6.02644 6.36620 6.61854 6.76206 6.99563 7.09956 7.38947 7.60653 9.06829 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.008091 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.066475 B = 3459.754070 C = 4970.201179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 C -0.129 4.129 4 C -0.122 4.122 5 C 0.120 3.880 6 N -0.573 5.573 7 C 0.248 3.752 8 C -0.503 4.503 9 H 0.021 0.979 10 C 0.044 3.956 11 N -0.901 5.901 12 Si 0.927 3.073 13 H -0.287 1.287 14 H -0.278 1.278 15 H -0.285 1.285 16 C 0.559 3.441 17 O -0.582 6.582 18 C 0.068 3.932 19 C -0.133 4.133 20 C -0.062 4.062 21 C -0.159 4.159 22 C 0.276 3.724 23 O -0.488 6.488 24 N -0.442 5.442 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.258 0.742 39 H 0.153 0.847 40 H 0.189 0.811 41 H 0.173 0.827 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -1.772 -10.660 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 C -0.187 4.187 4 C -0.180 4.180 5 C -0.003 4.003 6 N -0.300 5.300 7 C 0.127 3.873 8 C -0.542 4.542 9 H 0.040 0.960 10 C -0.156 4.156 11 N -0.541 5.541 12 Si 0.755 3.245 13 H -0.212 1.212 14 H -0.204 1.204 15 H -0.211 1.211 16 C 0.346 3.654 17 O -0.465 6.465 18 C -0.070 4.070 19 C -0.154 4.154 20 C -0.088 4.088 21 C -0.180 4.180 22 C 0.095 3.905 23 O -0.296 6.296 24 N -0.163 5.163 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.035 0.965 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.171 0.829 40 H 0.206 0.794 41 H 0.190 0.810 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.465 -1.134 -9.845 10.869 hybrid contribution -0.150 -0.897 0.861 1.252 sum 4.315 -2.031 -8.984 10.171 Atomic orbital electron populations 1.21920 0.94461 1.01314 1.01666 1.20914 0.95981 0.96569 0.94548 1.21735 1.01059 0.93138 1.02728 1.21701 1.00497 0.98799 0.96980 1.21627 0.99954 0.80575 0.98173 1.48168 1.18382 1.06951 1.56533 1.19817 0.78020 0.95364 0.94056 1.21260 0.92420 1.41200 0.99355 0.96031 1.25084 0.95189 0.95796 0.99554 1.69949 0.98670 1.47955 1.37546 0.86018 0.77157 0.78310 0.83025 1.21223 1.20394 1.21128 1.18182 0.84173 0.85162 0.77836 1.90622 1.21007 1.81001 1.53870 1.21059 0.91971 0.95096 0.98825 1.22260 1.00482 0.94012 0.98668 1.21866 0.95163 0.95170 0.96563 1.22641 0.96315 1.01789 0.97228 1.19871 0.89444 0.88353 0.92800 1.84801 1.15673 1.85787 1.43330 1.68050 1.14966 1.18923 1.14355 0.93099 0.91343 0.94170 0.92323 0.90866 0.92118 0.95600 0.91299 0.93094 0.91380 0.91197 0.96496 0.90992 0.93256 0.82906 0.79374 0.80953 0.73328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 7.37 71.98 0.53 -3.88 16 2 C -0.08 -2.49 0.85 -52.18 -0.04 -2.53 16 3 C -0.13 -3.14 8.47 71.98 0.61 -2.53 16 4 C -0.12 -3.87 7.24 71.98 0.52 -3.35 16 5 C 0.12 4.61 4.59 86.38 0.40 5.00 16 6 N -0.57 -25.61 1.98 -829.22 -1.64 -27.25 16 7 C 0.25 12.42 3.60 85.63 0.31 12.73 16 8 C -0.50 -28.10 7.97 25.60 0.20 -27.89 16 9 H 0.02 1.28 7.81 -2.92 -0.02 1.26 16 10 C 0.04 2.44 5.46 84.65 0.46 2.91 16 11 N -0.90 -50.50 13.29 21.45 0.28 -50.21 16 12 Si 0.93 45.74 29.54 68.60 2.03 47.77 16 13 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 15 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 16 C 0.56 24.82 6.03 86.88 0.52 25.34 16 17 O -0.58 -26.13 14.59 -3.78 -0.06 -26.19 16 18 C 0.07 2.81 6.62 41.85 0.28 3.09 16 19 C -0.13 -4.20 9.62 22.61 0.22 -3.98 16 20 C -0.06 -1.47 10.16 22.42 0.23 -1.24 16 21 C -0.16 -4.18 10.05 22.54 0.23 -3.95 16 22 C 0.28 10.23 7.74 84.92 0.66 10.89 16 23 O -0.49 -18.15 13.56 -89.89 -1.22 -19.37 16 24 N -0.44 -19.41 5.01 -298.19 -1.49 -20.90 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.04 1.53 5.75 -2.39 -0.01 1.52 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.02 0.92 6.83 -2.39 -0.02 0.90 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.70 7.43 -2.38 -0.02 1.68 16 34 H 0.07 2.67 8.10 -2.39 -0.02 2.65 16 35 H 0.07 2.72 7.27 -2.39 -0.02 2.70 16 36 H 0.02 0.90 5.92 -2.39 -0.01 0.88 16 37 H 0.07 3.81 5.24 -3.16 -0.02 3.79 16 38 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.15 4.40 7.65 -2.91 -0.02 4.38 16 40 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.41 11.56 9.06 -74.05 -0.67 10.89 16 Total: -1.00 -69.57 339.41 3.37 -66.20 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.36 Total: 19.36 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 5.12 Total: 10.60 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -2.85 Total: -98.37 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -1.27 Total: -45.56 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -69.57 3.37 -66.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279435388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.856 kcal (2) G-P(sol) polarization free energy of solvation -69.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds