Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00357 * 2 1 3 5 5 O 1.33650 * 125.80501 * 59.69568 * 4 2 1 6 6 C 1.34214 * 110.90688 * 179.81600 * 5 4 2 7 7 C 1.34173 * 109.12692 * 0.44776 * 6 5 4 8 8 C 1.36420 * 125.79556 * 239.99609 * 4 2 1 9 9 C 1.47376 * 127.19590 * 0.04106 * 8 4 2 10 10 O 1.21612 * 119.99885 * 42.71461 * 9 8 4 11 11 N 1.34778 * 119.99779 * 222.72395 * 9 8 4 12 12 C 1.46964 * 120.59773 * 5.45099 * 11 9 8 13 13 C 1.53805 * 108.39956 * 124.76293 * 12 11 9 14 14 N 1.46965 * 108.58090 * 49.63829 * 13 12 11 15 15 C 1.36934 * 120.59562 * 124.62809 * 14 13 12 16 16 H 1.07990 * 120.00363 * 208.52546 * 15 14 13 17 17 C 1.38817 * 120.00002 * 28.51805 * 15 14 13 18 18 N 1.31623 * 119.99788 * 16.84920 * 17 15 14 19 19 Si 1.86795 * 120.00088 * 196.84832 * 17 15 14 20 20 H 1.48501 * 109.47243 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47334 * 120.00583 * 19 17 15 22 22 H 1.48508 * 109.47165 * 240.00204 * 19 17 15 23 23 C 1.46961 * 118.81143 * 304.64636 * 14 13 12 24 24 C 1.46963 * 120.59180 * 185.73838 * 11 9 8 25 25 H 1.08994 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47215 * 299.99973 * 1 2 3 27 27 H 1.09000 * 109.46996 * 60.00244 * 1 2 3 28 28 H 1.08998 * 109.47478 * 119.99957 * 2 1 3 29 29 H 1.08993 * 109.47041 * 59.99920 * 3 2 1 30 30 H 1.09001 * 109.46808 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46973 * 299.99770 * 3 2 1 32 32 H 1.08002 * 125.43365 * 180.15679 * 6 5 4 33 33 H 1.08000 * 127.02506 * 179.75703 * 7 6 5 34 34 H 1.09001 * 109.60909 * 244.54756 * 12 11 9 35 35 H 1.09000 * 109.60522 * 5.05400 * 12 11 9 36 36 H 1.09005 * 109.74280 * 289.84937 * 13 12 11 37 37 H 1.08999 * 109.53522 * 169.30857 * 13 12 11 38 38 H 0.96996 * 119.99857 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.61238 * 295.48725 * 23 14 13 40 40 H 1.08994 * 109.75464 * 175.05508 * 23 14 13 41 41 H 1.08998 * 109.61280 * 354.93876 * 24 11 9 42 42 H 1.08998 * 109.61376 * 115.45451 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7772 -0.3596 -2.4947 6 6 2.3770 -1.1976 -3.3546 7 6 3.0407 -2.1364 -2.6629 8 6 2.8199 -1.8241 -1.2433 9 6 3.3400 -2.5610 -0.0777 10 8 2.6176 -2.7779 0.8763 11 7 4.6162 -2.9941 -0.0689 12 6 5.5347 -2.6376 -1.1594 13 6 6.7760 -1.9656 -0.5485 14 7 7.2724 -2.8080 0.5486 15 6 8.5688 -3.2490 0.5571 16 1 8.8196 -4.1792 1.0449 17 6 9.5606 -2.5002 -0.0615 18 7 9.3417 -1.2373 -0.3607 19 14 11.2059 -3.2850 -0.4693 20 1 11.1986 -4.7048 -0.0341 21 1 11.4365 -3.2182 -1.9348 22 1 12.2905 -2.5560 0.2361 23 6 6.3524 -3.1692 1.6363 24 6 5.1126 -3.8367 1.0281 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.3287 -1.1300 -4.4314 33 1 3.6193 -2.9541 -3.0665 34 1 5.8305 -3.5381 -1.6977 35 1 5.0409 -1.9460 -1.8421 36 1 6.5095 -0.9816 -0.1624 37 1 7.5484 -1.8651 -1.3109 38 1 10.0348 -0.7140 -0.7926 39 1 6.0557 -2.2710 2.1778 40 1 6.8433 -3.8626 2.3190 41 1 4.3402 -3.9371 1.7906 42 1 5.3791 -4.8205 0.6421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280872969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = 2.423724 kcal Electronic energy + Delta-G solvation = -24304.146459 eV Core-core repulsion = 20865.669688 eV Total energy + Delta-G solvation = -3438.476771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -42.53766 -39.32201 -36.76648 -35.50983 -33.90105 -32.85032 -31.18028 -30.09661 -29.08452 -27.24284 -26.98949 -24.25322 -23.17875 -22.44986 -22.42156 -20.65933 -19.80435 -18.44672 -17.53902 -16.41163 -16.15628 -15.74837 -15.43761 -14.99642 -14.75754 -14.52401 -14.29744 -13.65480 -13.45051 -13.31145 -13.19545 -13.17397 -12.93038 -12.64233 -12.28426 -12.24784 -11.63761 -11.34245 -11.29716 -11.26907 -10.97312 -10.86665 -10.72886 -10.48555 -10.23623 -10.07423 -9.85603 -9.70584 -9.33217 -8.60881 -8.53208 -8.19871 -6.71090 -5.86302 -3.31095 1.60914 2.19207 2.86109 3.27047 3.32726 3.40801 3.42938 3.61038 4.42971 4.43870 4.81495 4.85215 5.02468 5.05649 5.28590 5.29887 5.35539 5.49811 5.53272 5.61251 5.71761 5.81385 5.83461 5.88668 5.89578 5.99234 6.06374 6.14579 6.15997 6.17757 6.24556 6.35280 6.39855 6.45680 6.79182 6.94244 7.11899 7.23794 7.46893 7.71672 7.93746 8.35303 8.57826 9.11428 9.73931 10.31405 11.21375 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.004325 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.530869 B = 6472.082005 C = 6752.498060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.022 4.022 3 C -0.149 4.149 4 C 0.066 3.934 5 O -0.175 6.175 6 C -0.044 4.044 7 C -0.183 4.183 8 C -0.224 4.224 9 C 0.583 3.417 10 O -0.558 6.558 11 N -0.587 5.587 12 C 0.077 3.923 13 C 0.159 3.841 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.132 3.868 24 C 0.096 3.904 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.206 0.794 33 H 0.156 0.844 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.100 0.900 38 H 0.254 0.746 39 H 0.023 0.977 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 1.962 -4.804 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.040 4.040 3 C -0.206 4.206 4 C 0.014 3.986 5 O -0.071 6.071 6 C -0.109 4.109 7 C -0.202 4.202 8 C -0.229 4.229 9 C 0.372 3.628 10 O -0.438 6.438 11 N -0.318 5.318 12 C -0.047 4.047 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.005 3.995 24 C -0.028 4.028 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.130 0.870 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.223 0.777 33 H 0.174 0.826 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.049 2.187 -4.453 15.846 hybrid contribution 1.240 -0.578 -0.540 1.471 sum -13.809 1.608 -4.992 14.772 Atomic orbital electron populations 1.21808 0.93354 1.02605 1.02258 1.19986 0.96680 0.95981 0.91354 1.21885 1.01968 0.94319 1.02449 1.22584 0.96902 0.95093 0.84019 1.83696 1.59664 1.48694 1.15051 1.23803 0.99612 0.92122 0.95410 1.22874 1.04013 1.02147 0.91171 1.21180 1.06796 1.00621 0.94260 1.17322 0.81598 0.78644 0.85241 1.90714 1.57912 1.59026 1.36190 1.47908 1.09497 1.50022 1.24393 1.22928 0.92547 1.00202 0.88997 1.21256 0.92160 0.91210 0.92117 1.44003 1.07980 1.59599 1.19842 1.19259 0.83148 1.01953 1.34047 0.91420 1.25077 0.97705 0.94736 1.02014 1.70024 1.33801 1.05797 1.45060 0.86206 0.83720 0.78844 0.77897 1.20188 1.21500 1.21662 1.21289 0.89832 0.97315 0.91075 1.22233 0.97786 0.93313 0.89480 0.92023 0.91571 0.92309 0.87034 0.91480 0.91906 0.92129 0.77737 0.82591 0.92069 0.90233 0.95935 0.88224 0.93551 0.95857 0.91504 0.89908 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 2 C -0.02 -0.28 3.24 -91.77 -0.30 -0.58 16 3 C -0.15 -1.68 9.18 37.16 0.34 -1.34 16 4 C 0.07 0.98 5.88 -34.96 -0.21 0.77 16 5 O -0.17 -2.30 10.52 7.66 0.08 -2.22 16 6 C -0.04 -0.49 12.03 29.30 0.35 -0.14 16 7 C -0.18 -2.44 8.80 -37.45 -0.33 -2.77 16 8 C -0.22 -3.66 5.23 -103.27 -0.54 -4.20 16 9 C 0.58 11.04 7.29 -12.54 -0.09 10.95 16 10 O -0.56 -11.60 15.27 5.27 0.08 -11.52 16 11 N -0.59 -11.21 2.94 -173.50 -0.51 -11.72 16 12 C 0.08 1.45 5.93 -3.37 -0.02 1.43 16 13 C 0.16 3.70 5.52 -3.37 -0.02 3.68 16 14 N -0.59 -14.58 2.97 -171.77 -0.51 -15.08 16 15 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 16 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 17 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 18 N -0.90 -25.49 11.18 55.49 0.62 -24.87 16 19 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.13 2.81 6.67 -3.59 -0.02 2.78 16 24 C 0.10 1.81 6.60 -3.59 -0.02 1.79 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.11 1.68 6.58 -51.93 -0.34 1.34 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.16 1.87 7.73 -52.49 -0.41 1.46 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.36 4.83 -51.93 -0.25 1.11 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 2.54 5.99 -51.93 -0.31 2.23 16 38 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.34 7.94 -51.93 -0.41 0.93 16 41 H 0.08 1.52 6.99 -51.93 -0.36 1.15 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -31.30 339.55 -7.18 -38.48 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.28 Total: 1.53 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.75 Total: 4.24 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.40 Total: -51.67 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.16 Total: -13.74 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.30 -7.18 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280872969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.899 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds