Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00357 * 2 1 3 5 5 O 1.33650 * 125.80501 * 59.69568 * 4 2 1 6 6 C 1.34214 * 110.90688 * 179.81600 * 5 4 2 7 7 C 1.34173 * 109.12692 * 0.44776 * 6 5 4 8 8 C 1.36420 * 125.79556 * 239.99609 * 4 2 1 9 9 C 1.47376 * 127.19590 * 0.04106 * 8 4 2 10 10 O 1.21612 * 119.99885 * 42.71461 * 9 8 4 11 11 N 1.34778 * 119.99779 * 222.72395 * 9 8 4 12 12 C 1.46964 * 120.59773 * 5.45099 * 11 9 8 13 13 C 1.53805 * 108.39956 * 124.76293 * 12 11 9 14 14 N 1.46965 * 108.58090 * 49.63829 * 13 12 11 15 15 C 1.36934 * 120.59562 * 124.62809 * 14 13 12 16 16 H 1.07990 * 120.00363 * 208.52546 * 15 14 13 17 17 C 1.38817 * 120.00002 * 28.51805 * 15 14 13 18 18 N 1.31623 * 119.99788 * 16.84920 * 17 15 14 19 19 Si 1.86795 * 120.00088 * 196.84832 * 17 15 14 20 20 H 1.48501 * 109.47243 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47334 * 120.00583 * 19 17 15 22 22 H 1.48508 * 109.47165 * 240.00204 * 19 17 15 23 23 C 1.46961 * 118.81143 * 304.64636 * 14 13 12 24 24 C 1.46963 * 120.59180 * 185.73838 * 11 9 8 25 25 H 1.08994 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47215 * 299.99973 * 1 2 3 27 27 H 1.09000 * 109.46996 * 60.00244 * 1 2 3 28 28 H 1.08998 * 109.47478 * 119.99957 * 2 1 3 29 29 H 1.08993 * 109.47041 * 59.99920 * 3 2 1 30 30 H 1.09001 * 109.46808 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46973 * 299.99770 * 3 2 1 32 32 H 1.08002 * 125.43365 * 180.15679 * 6 5 4 33 33 H 1.08000 * 127.02506 * 179.75703 * 7 6 5 34 34 H 1.09001 * 109.60909 * 244.54756 * 12 11 9 35 35 H 1.09000 * 109.60522 * 5.05400 * 12 11 9 36 36 H 1.09005 * 109.74280 * 289.84937 * 13 12 11 37 37 H 1.08999 * 109.53522 * 169.30857 * 13 12 11 38 38 H 0.96996 * 119.99857 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.61238 * 295.48725 * 23 14 13 40 40 H 1.08994 * 109.75464 * 175.05508 * 23 14 13 41 41 H 1.08998 * 109.61280 * 354.93876 * 24 11 9 42 42 H 1.08998 * 109.61376 * 115.45451 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7772 -0.3596 -2.4947 6 6 2.3770 -1.1976 -3.3546 7 6 3.0407 -2.1364 -2.6629 8 6 2.8199 -1.8241 -1.2433 9 6 3.3400 -2.5610 -0.0777 10 8 2.6176 -2.7779 0.8763 11 7 4.6162 -2.9941 -0.0689 12 6 5.5347 -2.6376 -1.1594 13 6 6.7760 -1.9656 -0.5485 14 7 7.2724 -2.8080 0.5486 15 6 8.5688 -3.2490 0.5571 16 1 8.8196 -4.1792 1.0449 17 6 9.5606 -2.5002 -0.0615 18 7 9.3417 -1.2373 -0.3607 19 14 11.2059 -3.2850 -0.4693 20 1 11.1986 -4.7048 -0.0341 21 1 11.4365 -3.2182 -1.9348 22 1 12.2905 -2.5560 0.2361 23 6 6.3524 -3.1692 1.6363 24 6 5.1126 -3.8367 1.0281 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.3287 -1.1300 -4.4314 33 1 3.6193 -2.9541 -3.0665 34 1 5.8305 -3.5381 -1.6977 35 1 5.0409 -1.9460 -1.8421 36 1 6.5095 -0.9816 -0.1624 37 1 7.5484 -1.8651 -1.3109 38 1 10.0348 -0.7140 -0.7926 39 1 6.0557 -2.2710 2.1778 40 1 6.8433 -3.8626 2.3190 41 1 4.3402 -3.9371 1.7906 42 1 5.3791 -4.8205 0.6421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280872969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -15.849193 kcal Electronic energy + Delta-G solvation = -24304.938832 eV Core-core repulsion = 20865.669688 eV Total energy + Delta-G solvation = -3439.269144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.58986 -40.84633 -38.45299 -36.51671 -35.63929 -34.12697 -32.95619 -31.80877 -30.14533 -28.75375 -28.11618 -25.94147 -24.79669 -23.95613 -23.46385 -22.05186 -21.19779 -19.81952 -19.00426 -17.95701 -17.52004 -17.08697 -16.73624 -16.61253 -16.24476 -15.76964 -15.49819 -15.44138 -15.19811 -15.02414 -14.53316 -14.21419 -14.07743 -13.89623 -13.58860 -13.31228 -13.16197 -13.08933 -12.71289 -12.50181 -12.27578 -12.23466 -12.19782 -12.06173 -12.00082 -11.89954 -11.68279 -11.11291 -10.66944 -10.56375 -9.88873 -9.52986 -8.68087 -7.89899 -5.39100 0.45752 1.15865 1.47728 1.50332 1.60685 1.76766 1.92979 2.20204 2.51047 3.25166 3.46598 3.55844 3.57909 3.87392 4.03545 4.08940 4.20521 4.22146 4.25886 4.37435 4.50545 4.55836 4.63283 4.67582 4.72335 4.74529 4.78320 4.85813 4.88571 4.95672 5.03617 5.10468 5.18912 5.24690 5.27285 5.40453 5.49524 5.58711 5.63615 6.07488 6.33890 6.42652 7.08137 7.09460 7.75953 8.30610 9.15827 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.004325 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.530869 B = 6472.082005 C = 6752.498060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 C -0.143 4.143 4 C 0.065 3.935 5 O -0.173 6.173 6 C -0.021 4.021 7 C -0.202 4.202 8 C -0.261 4.261 9 C 0.583 3.417 10 O -0.583 6.583 11 N -0.594 5.594 12 C 0.097 3.903 13 C 0.167 3.833 14 N -0.608 5.608 15 C -0.266 4.266 16 H 0.071 0.929 17 C -0.045 4.045 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.294 1.294 23 C 0.132 3.868 24 C 0.105 3.895 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.254 0.746 33 H 0.169 0.831 34 H 0.072 0.928 35 H 0.100 0.900 36 H -0.008 1.008 37 H 0.077 0.923 38 H 0.252 0.748 39 H 0.007 0.993 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.638 1.712 -6.425 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.045 4.045 3 C -0.200 4.200 4 C 0.012 3.988 5 O -0.069 6.069 6 C -0.086 4.086 7 C -0.221 4.221 8 C -0.265 4.265 9 C 0.373 3.627 10 O -0.465 6.465 11 N -0.324 5.324 12 C -0.027 4.027 13 C 0.040 3.960 14 N -0.331 5.331 15 C -0.396 4.396 16 H 0.089 0.911 17 C -0.241 4.241 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.191 1.191 21 H -0.213 1.213 22 H -0.222 1.222 23 C 0.006 3.994 24 C -0.019 4.019 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.270 0.730 33 H 0.186 0.814 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.011 0.989 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.037 1.922 -6.072 17.256 hybrid contribution 1.492 -0.460 0.001 1.561 sum -14.545 1.461 -6.071 15.829 Atomic orbital electron populations 1.21770 0.91389 1.02324 1.03831 1.20025 0.98286 0.96407 0.89793 1.21853 1.00643 0.93498 1.04040 1.22808 0.96171 0.94718 0.85054 1.83729 1.59612 1.48946 1.14565 1.24702 0.96938 0.90066 0.96882 1.23057 1.05652 1.03674 0.89757 1.21202 1.08647 1.01868 0.94811 1.17716 0.81165 0.78097 0.85718 1.90685 1.58435 1.59936 1.37472 1.47962 1.09803 1.50246 1.24426 1.22663 0.90601 1.00605 0.88783 1.21058 0.93300 0.90331 0.91274 1.44257 1.08092 1.59644 1.21111 1.19583 0.84177 1.02056 1.33795 0.91119 1.25819 1.00974 0.95077 1.02183 1.70175 1.34767 1.07081 1.46026 0.85175 0.79365 0.78295 0.77368 1.19058 1.21303 1.22159 1.21357 0.90432 0.96990 0.90629 1.22085 0.96577 0.93468 0.89742 0.93196 0.89766 0.90960 0.89813 0.89652 0.93889 0.90778 0.73000 0.81373 0.91010 0.88207 0.98940 0.90524 0.93866 0.97535 0.90504 0.89380 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 2 C -0.03 -0.68 3.24 -11.54 -0.04 -0.72 16 3 C -0.14 -3.10 9.18 71.98 0.66 -2.44 16 4 C 0.07 1.86 5.88 25.26 0.15 2.01 16 5 O -0.17 -4.10 10.52 4.49 0.05 -4.06 16 6 C -0.02 -0.40 12.03 66.89 0.80 0.41 16 7 C -0.20 -4.97 8.80 23.65 0.21 -4.77 16 8 C -0.26 -8.34 5.23 -18.99 -0.10 -8.44 16 9 C 0.58 22.16 7.29 86.65 0.63 22.80 16 10 O -0.58 -24.65 15.27 -4.07 -0.06 -24.71 16 11 N -0.59 -22.63 2.94 -821.09 -2.41 -25.05 16 12 C 0.10 3.63 5.93 86.56 0.51 4.14 16 13 C 0.17 7.95 5.52 86.56 0.48 8.42 16 14 N -0.61 -30.40 2.97 -697.36 -2.07 -32.47 16 15 C -0.27 -14.29 9.58 84.04 0.81 -13.48 16 16 H 0.07 3.68 7.88 -2.92 -0.02 3.66 16 17 C -0.04 -2.43 4.92 84.86 0.42 -2.01 16 18 N -0.93 -53.86 11.18 21.65 0.24 -53.61 16 19 Si 0.97 43.42 29.59 68.60 2.03 45.45 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 C 0.13 5.71 6.67 86.42 0.58 6.28 16 24 C 0.11 3.96 6.60 86.42 0.57 4.53 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 2.61 6.58 -2.39 -0.02 2.60 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.25 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.17 3.62 7.73 -2.91 -0.02 3.59 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.10 3.33 4.83 -2.39 -0.01 3.32 16 36 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 37 H 0.08 4.01 5.99 -2.39 -0.01 3.99 16 38 H 0.25 14.00 8.31 -92.71 -0.77 13.22 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.08 3.10 7.94 -2.39 -0.02 3.08 16 41 H 0.09 3.23 6.99 -2.39 -0.02 3.21 16 42 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -68.70 339.55 5.12 -63.58 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.01 Total: 16.20 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.34 Total: 14.67 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -4.24 Total: -111.13 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.01 Total: -28.77 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.70 5.12 -63.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280872969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.731 kcal (2) G-P(sol) polarization free energy of solvation -68.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds