Wall clock time and date at job start Tue Mar 31 2020 07:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47310 * 119.99897 * 2 1 3 5 5 H 1.08995 * 109.47546 * 185.02972 * 4 2 1 6 6 O 1.42909 * 109.46874 * 305.03109 * 4 2 1 7 7 C 1.50697 * 109.46813 * 65.02709 * 4 2 1 8 8 O 1.21283 * 120.00302 * 256.04917 * 7 4 2 9 9 N 1.34784 * 119.99826 * 76.05705 * 7 4 2 10 10 C 1.46497 * 119.99787 * 355.22460 * 9 7 4 11 11 C 1.50701 * 109.47089 * 264.63208 * 10 9 7 12 12 H 1.07995 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99800 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00185 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47257 * 89.99913 * 15 13 11 17 17 H 1.48495 * 109.47213 * 210.00430 * 15 13 11 18 18 H 1.48501 * 109.46980 * 330.00137 * 15 13 11 19 19 C 1.46503 * 119.99805 * 175.22507 * 9 7 4 20 20 C 1.50695 * 109.46688 * 90.00147 * 19 9 7 21 21 C 1.38227 * 119.62320 * 94.98064 * 20 19 9 22 22 C 1.38618 * 119.16629 * 179.78800 * 21 20 19 23 23 C 1.38682 * 118.41939 * 0.46857 * 22 21 20 24 24 C 1.38177 * 119.16169 * 359.50610 * 23 22 21 25 25 N 1.31855 * 119.61906 * 274.99433 * 20 19 9 26 26 H 1.09003 * 109.47089 * 60.00022 * 1 2 3 27 27 H 1.08993 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47148 * 300.00597 * 1 2 3 29 29 H 1.09007 * 109.47215 * 239.99946 * 2 1 3 30 30 H 1.09000 * 109.47287 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47033 * 300.00012 * 3 2 1 32 32 H 1.08994 * 109.46863 * 59.99786 * 3 2 1 33 33 H 0.96698 * 113.99688 * 59.99791 * 6 4 2 34 34 H 1.09003 * 109.47348 * 24.63696 * 10 9 7 35 35 H 1.09005 * 109.46822 * 144.62965 * 10 9 7 36 36 H 0.97003 * 119.99825 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.46929 * 329.99891 * 19 9 7 38 38 H 1.09001 * 109.46901 * 209.99572 * 19 9 7 39 39 H 1.08002 * 120.41201 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.79547 * 180.22504 * 22 21 20 41 41 H 1.07999 * 120.42049 * 179.77908 * 23 22 21 42 42 H 1.07995 * 119.61962 * 180.25039 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1262 -0.6439 1.2955 6 8 1.4696 -0.1192 2.4131 7 6 1.6419 -2.1734 1.1885 8 8 0.7237 -2.5795 1.8689 9 7 2.3064 -3.0210 0.3782 10 6 3.3454 -2.5120 -0.5204 11 6 2.7517 -2.2581 -1.8821 12 1 1.7050 -2.4557 -2.0601 13 6 3.5448 -1.7736 -2.9005 14 7 4.8196 -1.5335 -2.6838 15 14 2.8091 -1.4595 -4.5885 16 1 2.3015 -0.0656 -4.6557 17 1 3.8515 -1.6574 -5.6274 18 1 1.6893 -2.4059 -4.8243 19 6 1.9895 -4.4512 0.3960 20 6 0.9054 -4.7380 -0.6106 21 6 1.2474 -5.1637 -1.8805 22 6 0.2424 -5.4290 -2.7976 23 6 -1.0749 -5.2461 -2.4045 24 6 -1.3404 -4.8184 -1.1177 25 7 -0.3585 -4.5799 -0.2700 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.5035 -0.1516 2.4392 34 1 3.7480 -1.5815 -0.1203 35 1 4.1455 -3.2476 -0.6043 36 1 5.3776 -1.1929 -3.4004 37 1 1.6460 -4.7348 1.3909 38 1 2.8815 -5.0242 0.1425 39 1 2.2845 -5.2908 -2.1537 40 1 0.4796 -5.7663 -3.7957 41 1 -1.8833 -5.4398 -3.0940 42 1 -2.3637 -4.6775 -0.8025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285226623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:09 Heat of formation + Delta-G solvation = -58.907957 kcal Electronic energy + Delta-G solvation = -25146.827624 eV Core-core repulsion = 21705.691312 eV Total energy + Delta-G solvation = -3441.136312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03425 -39.27132 -36.61383 -35.19955 -33.22930 -32.79140 -31.98328 -31.28591 -27.94058 -27.26113 -26.71221 -25.18326 -23.13284 -22.85396 -21.71610 -19.99652 -18.75563 -16.92341 -16.76284 -16.45338 -15.86021 -15.76998 -15.43088 -15.15108 -14.61297 -14.33519 -14.05943 -13.39419 -13.22112 -12.94275 -12.77380 -12.50824 -12.38466 -12.20609 -11.80921 -11.73277 -11.61236 -11.43016 -11.29987 -11.12070 -10.99234 -10.83567 -10.60175 -10.31420 -10.11274 -9.89679 -9.65519 -9.41673 -8.96367 -8.79361 -8.67502 -8.39726 -7.78147 -6.27490 -4.32426 1.51982 1.75664 3.14542 3.23200 3.24923 3.37142 3.82401 4.23738 4.42428 4.75354 4.89294 5.06282 5.16107 5.19436 5.31298 5.36134 5.45541 5.47540 5.59324 5.74222 5.87447 5.95733 6.04968 6.12567 6.17801 6.21751 6.24867 6.31287 6.42101 6.55163 6.60919 6.62024 6.67652 6.79401 7.05112 7.13138 7.14523 7.45184 7.67799 7.96050 7.98834 8.28272 8.51953 8.72103 8.98889 9.33528 10.78576 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.009407 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.063145 B = 2975.893258 C = 4429.761826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C -0.134 4.134 4 C 0.103 3.897 5 H 0.118 0.882 6 O -0.549 6.549 7 C 0.491 3.509 8 O -0.547 6.547 9 N -0.591 5.591 10 C 0.232 3.768 11 C -0.529 4.529 12 H 0.063 0.937 13 C 0.071 3.929 14 N -0.885 5.885 15 Si 0.886 3.114 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.171 3.829 20 C 0.125 3.875 21 C -0.130 4.130 22 C -0.085 4.085 23 C -0.181 4.181 24 C 0.085 3.915 25 N -0.459 5.459 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.134 0.866 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.375 0.625 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 -2.969 0.632 6.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.191 4.191 4 C 0.041 3.959 5 H 0.136 0.864 6 O -0.355 6.355 7 C 0.279 3.721 8 O -0.425 6.425 9 N -0.323 5.323 10 C 0.112 3.888 11 C -0.567 4.567 12 H 0.081 0.919 13 C -0.133 4.133 14 N -0.523 5.523 15 Si 0.713 3.287 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.197 1.197 19 C 0.047 3.953 20 C -0.014 4.014 21 C -0.151 4.151 22 C -0.111 4.111 23 C -0.202 4.202 24 C -0.072 4.072 25 N -0.168 5.168 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.151 0.849 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.224 0.776 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.155 0.845 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.554 -2.710 1.909 6.468 hybrid contribution -0.683 -0.116 -2.464 2.560 sum -6.237 -2.826 -0.555 6.869 Atomic orbital electron populations 1.21771 0.95821 1.01868 1.00818 1.22107 0.95889 0.97481 1.00625 1.21670 1.01122 0.95558 1.00749 1.21871 0.99252 0.88485 0.86290 0.86422 1.86498 1.25987 1.80122 1.42906 1.21386 0.82271 0.89057 0.79403 1.90643 1.29007 1.78241 1.44657 1.48205 1.38683 1.05802 1.39622 1.19584 0.85503 0.95639 0.88048 1.21375 0.96370 1.44177 0.94785 0.91926 1.24879 0.94658 0.95132 0.98653 1.69909 1.05025 1.43957 1.33370 0.86671 0.79038 0.79017 0.83963 1.20404 1.21068 1.19743 1.20087 0.94293 0.83349 0.97559 1.21626 0.92106 0.93707 0.93986 1.21999 1.00790 0.98494 0.93790 1.21490 0.92838 0.97424 0.99392 1.22024 0.97302 1.02862 0.97981 1.22628 0.98385 0.96087 0.90116 1.67578 1.00070 1.12645 1.36483 0.92809 0.92492 0.93447 0.84886 0.92573 0.93175 0.93127 0.77609 0.93978 0.94626 0.92446 0.89577 0.89453 0.84517 0.85554 0.85754 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.58 37.16 0.32 -2.20 16 2 C -0.14 -2.64 2.53 -90.62 -0.23 -2.87 16 3 C -0.13 -2.22 9.09 37.16 0.34 -1.89 16 4 C 0.10 1.96 2.30 -27.88 -0.06 1.89 16 5 H 0.12 2.25 6.71 -51.93 -0.35 1.91 16 6 O -0.55 -10.02 12.52 -54.61 -0.68 -10.71 16 7 C 0.49 10.20 5.98 -10.98 -0.07 10.14 16 8 O -0.55 -12.39 15.85 -13.82 -0.22 -12.61 16 9 N -0.59 -11.96 2.45 -176.43 -0.43 -12.39 16 10 C 0.23 5.05 4.73 -5.19 -0.02 5.03 16 11 C -0.53 -12.35 6.04 -34.44 -0.21 -12.56 16 12 H 0.06 1.55 6.98 -52.49 -0.37 1.19 16 13 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.88 -22.59 13.29 55.43 0.74 -21.85 16 15 Si 0.89 19.52 29.54 -169.99 -5.02 14.50 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 C 0.17 3.16 5.72 -5.19 -0.03 3.13 16 20 C 0.13 2.34 5.82 -82.59 -0.48 1.85 16 21 C -0.13 -2.25 8.63 -39.45 -0.34 -2.59 16 22 C -0.09 -1.32 10.18 -39.28 -0.40 -1.72 16 23 C -0.18 -2.64 10.11 -39.44 -0.40 -3.04 16 24 C 0.09 1.38 11.18 -17.55 -0.20 1.18 16 25 N -0.46 -8.80 10.27 -9.48 -0.10 -8.89 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.11 7.31 -51.93 -0.38 0.73 16 28 H 0.05 0.72 6.72 -51.93 -0.35 0.37 16 29 H 0.13 2.86 4.50 -51.92 -0.23 2.63 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.78 7.82 -51.93 -0.41 0.37 16 33 H 0.37 6.24 6.82 45.56 0.31 6.55 16 34 H 0.04 0.95 5.67 -51.93 -0.29 0.66 16 35 H 0.04 0.81 7.97 -51.93 -0.41 0.39 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 37 H 0.09 1.62 7.49 -51.93 -0.39 1.23 16 38 H 0.09 1.41 7.84 -51.93 -0.41 1.00 16 39 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -28.10 342.39 -7.81 -35.91 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.37 Total: 12.89 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.88 Total: -2.01 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.21 Total: -43.13 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.90 Total: -23.32 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.10 -7.81 -35.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285226623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.999 kcal (2) G-P(sol) polarization free energy of solvation -28.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds