Wall clock time and date at job start Tue Mar 31 2020 07:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47310 * 119.99897 * 2 1 3 5 5 H 1.08995 * 109.47546 * 185.02972 * 4 2 1 6 6 O 1.42909 * 109.46874 * 305.03109 * 4 2 1 7 7 C 1.50697 * 109.46813 * 65.02709 * 4 2 1 8 8 O 1.21283 * 120.00302 * 256.04917 * 7 4 2 9 9 N 1.34784 * 119.99826 * 76.05705 * 7 4 2 10 10 C 1.46497 * 119.99787 * 355.22460 * 9 7 4 11 11 C 1.50701 * 109.47089 * 264.63208 * 10 9 7 12 12 H 1.07995 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99800 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00185 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47257 * 89.99913 * 15 13 11 17 17 H 1.48495 * 109.47213 * 210.00430 * 15 13 11 18 18 H 1.48501 * 109.46980 * 330.00137 * 15 13 11 19 19 C 1.46503 * 119.99805 * 175.22507 * 9 7 4 20 20 C 1.50695 * 109.46688 * 90.00147 * 19 9 7 21 21 C 1.38227 * 119.62320 * 94.98064 * 20 19 9 22 22 C 1.38618 * 119.16629 * 179.78800 * 21 20 19 23 23 C 1.38682 * 118.41939 * 0.46857 * 22 21 20 24 24 C 1.38177 * 119.16169 * 359.50610 * 23 22 21 25 25 N 1.31855 * 119.61906 * 274.99433 * 20 19 9 26 26 H 1.09003 * 109.47089 * 60.00022 * 1 2 3 27 27 H 1.08993 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47148 * 300.00597 * 1 2 3 29 29 H 1.09007 * 109.47215 * 239.99946 * 2 1 3 30 30 H 1.09000 * 109.47287 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47033 * 300.00012 * 3 2 1 32 32 H 1.08994 * 109.46863 * 59.99786 * 3 2 1 33 33 H 0.96698 * 113.99688 * 59.99791 * 6 4 2 34 34 H 1.09003 * 109.47348 * 24.63696 * 10 9 7 35 35 H 1.09005 * 109.46822 * 144.62965 * 10 9 7 36 36 H 0.97003 * 119.99825 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.46929 * 329.99891 * 19 9 7 38 38 H 1.09001 * 109.46901 * 209.99572 * 19 9 7 39 39 H 1.08002 * 120.41201 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.79547 * 180.22504 * 22 21 20 41 41 H 1.07999 * 120.42049 * 179.77908 * 23 22 21 42 42 H 1.07995 * 119.61962 * 180.25039 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1262 -0.6439 1.2955 6 8 1.4696 -0.1192 2.4131 7 6 1.6419 -2.1734 1.1885 8 8 0.7237 -2.5795 1.8689 9 7 2.3064 -3.0210 0.3782 10 6 3.3454 -2.5120 -0.5204 11 6 2.7517 -2.2581 -1.8821 12 1 1.7050 -2.4557 -2.0601 13 6 3.5448 -1.7736 -2.9005 14 7 4.8196 -1.5335 -2.6838 15 14 2.8091 -1.4595 -4.5885 16 1 2.3015 -0.0656 -4.6557 17 1 3.8515 -1.6574 -5.6274 18 1 1.6893 -2.4059 -4.8243 19 6 1.9895 -4.4512 0.3960 20 6 0.9054 -4.7380 -0.6106 21 6 1.2474 -5.1637 -1.8805 22 6 0.2424 -5.4290 -2.7976 23 6 -1.0749 -5.2461 -2.4045 24 6 -1.3404 -4.8184 -1.1177 25 7 -0.3585 -4.5799 -0.2700 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.5035 -0.1516 2.4392 34 1 3.7480 -1.5815 -0.1203 35 1 4.1455 -3.2476 -0.6043 36 1 5.3776 -1.1929 -3.4004 37 1 1.6460 -4.7348 1.3909 38 1 2.8815 -5.0242 0.1425 39 1 2.2845 -5.2908 -2.1537 40 1 0.4796 -5.7663 -3.7957 41 1 -1.8833 -5.4398 -3.0940 42 1 -2.3637 -4.6775 -0.8025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285226623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:08 Heat of formation + Delta-G solvation = -75.352644 kcal Electronic energy + Delta-G solvation = -25147.540719 eV Core-core repulsion = 21705.691312 eV Total energy + Delta-G solvation = -3441.849407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51760 -40.67994 -38.13604 -36.88932 -34.72542 -34.53210 -33.29550 -32.67570 -29.52165 -28.92962 -28.08996 -26.66022 -24.81729 -24.24371 -23.05741 -21.48422 -20.32382 -18.64701 -18.42995 -17.82846 -17.39450 -17.18275 -16.89874 -16.46068 -16.33859 -15.88762 -15.57143 -14.88608 -14.63390 -14.41343 -14.08128 -14.02377 -13.96862 -13.67625 -13.44131 -13.22971 -13.08438 -12.95242 -12.74236 -12.63710 -12.58435 -12.49081 -12.13896 -11.96327 -11.69332 -11.63287 -11.20710 -10.69684 -10.57205 -10.33258 -10.26797 -9.80392 -9.43038 -8.15059 -6.23023 0.24930 0.49988 1.39257 1.44750 1.50400 1.73092 2.27307 2.44611 3.07598 3.15192 3.42743 3.48582 3.67377 3.88941 3.94583 4.00701 4.06912 4.26345 4.31500 4.34508 4.51854 4.60639 4.62369 4.73506 4.83318 4.84872 4.92055 4.95228 4.96240 5.00764 5.21943 5.25156 5.30717 5.37203 5.41149 5.60546 5.70854 5.83418 5.90102 6.11332 6.51558 6.64114 6.86306 7.22736 7.31403 7.46397 8.90542 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.009407 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.063145 B = 2975.893258 C = 4429.761826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C -0.128 4.128 4 C 0.109 3.891 5 H 0.114 0.886 6 O -0.549 6.549 7 C 0.487 3.513 8 O -0.569 6.569 9 N -0.589 5.589 10 C 0.245 3.755 11 C -0.512 4.512 12 H 0.049 0.951 13 C 0.036 3.964 14 N -0.912 5.912 15 Si 0.932 3.068 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.168 3.832 20 C 0.104 3.896 21 C -0.143 4.143 22 C -0.090 4.090 23 C -0.169 4.169 24 C 0.072 3.928 25 N -0.493 5.493 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.383 0.617 34 H 0.034 0.966 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 -2.728 -0.482 7.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C -0.185 4.185 4 C 0.047 3.953 5 H 0.132 0.868 6 O -0.355 6.355 7 C 0.276 3.724 8 O -0.449 6.449 9 N -0.321 5.321 10 C 0.125 3.875 11 C -0.550 4.550 12 H 0.067 0.933 13 C -0.166 4.166 14 N -0.552 5.552 15 Si 0.759 3.241 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.195 1.195 19 C 0.044 3.956 20 C -0.034 4.034 21 C -0.164 4.164 22 C -0.116 4.116 23 C -0.189 4.189 24 C -0.085 4.085 25 N -0.203 5.203 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.171 0.829 41 H 0.181 0.819 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.877 -2.482 0.795 7.354 hybrid contribution -0.348 -0.237 -2.094 2.136 sum -7.225 -2.718 -1.299 7.828 Atomic orbital electron populations 1.21688 0.94779 1.00535 1.02404 1.21991 0.96725 0.98248 0.98830 1.21620 1.00662 0.94299 1.01926 1.21783 0.99083 0.87520 0.86923 0.86806 1.86482 1.26749 1.79804 1.42488 1.21718 0.81914 0.89781 0.79019 1.90621 1.29931 1.78792 1.45540 1.48180 1.38146 1.06672 1.39117 1.19314 0.85478 0.94924 0.87772 1.21293 0.95428 1.43065 0.95227 0.93271 1.25359 0.94867 0.95305 1.01024 1.69982 1.05884 1.45219 1.34078 0.85933 0.78376 0.78632 0.81134 1.20575 1.21054 1.19480 1.20208 0.95406 0.82447 0.97517 1.21542 0.92064 0.95274 0.94525 1.22068 1.01382 0.99100 0.93826 1.21882 0.92857 0.96645 1.00167 1.22414 0.98036 1.00695 0.97767 1.23135 0.98845 0.95778 0.90735 1.67525 1.00736 1.13875 1.38121 0.91761 0.95176 0.91301 0.87787 0.93277 0.92283 0.91608 0.76713 0.94817 0.95548 0.92524 0.90457 0.87787 0.84716 0.82899 0.81913 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 8.58 71.98 0.62 -3.95 16 2 C -0.14 -5.05 2.53 -10.79 -0.03 -5.08 16 3 C -0.13 -4.05 9.09 71.98 0.65 -3.40 16 4 C 0.11 4.12 2.30 29.85 0.07 4.19 16 5 H 0.11 4.38 6.71 -2.39 -0.02 4.37 16 6 O -0.55 -19.43 12.52 -130.45 -1.63 -21.07 16 7 C 0.49 20.44 5.98 87.66 0.52 20.96 16 8 O -0.57 -26.02 15.85 15.49 0.25 -25.78 16 9 N -0.59 -24.25 2.45 -830.49 -2.03 -26.28 16 10 C 0.25 10.84 4.73 85.63 0.40 11.25 16 11 C -0.51 -23.93 6.04 25.60 0.15 -23.78 16 12 H 0.05 2.44 6.98 -2.91 -0.02 2.42 16 13 C 0.04 1.71 5.46 84.65 0.46 2.18 16 14 N -0.91 -46.58 13.29 21.45 0.28 -46.30 16 15 Si 0.93 39.38 29.54 68.60 2.03 41.41 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 C 0.17 6.32 5.72 85.63 0.49 6.81 16 20 C 0.10 3.91 5.82 42.55 0.25 4.16 16 21 C -0.14 -4.85 8.63 22.36 0.19 -4.66 16 22 C -0.09 -2.56 10.18 22.47 0.23 -2.33 16 23 C -0.17 -4.43 10.11 22.36 0.23 -4.21 16 24 C 0.07 2.22 11.18 84.67 0.95 3.17 16 25 N -0.49 -18.80 10.27 -183.90 -1.89 -20.69 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.03 1.15 7.31 -2.39 -0.02 1.13 16 28 H 0.07 1.97 6.72 -2.38 -0.02 1.95 16 29 H 0.10 4.46 4.50 -2.38 -0.01 4.45 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.88 7.82 -2.39 -0.02 1.86 16 33 H 0.38 12.23 6.82 -74.06 -0.51 11.72 16 34 H 0.03 1.56 5.67 -2.39 -0.01 1.55 16 35 H 0.03 1.22 7.97 -2.38 -0.02 1.20 16 36 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 37 H 0.08 3.00 7.49 -2.39 -0.02 2.98 16 38 H 0.10 3.43 7.84 -2.39 -0.02 3.41 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 41 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.17 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -59.37 342.39 2.71 -56.66 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.52 Total: 36.74 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 5.19 Total: 5.31 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -3.64 Total: -93.27 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -1.39 Total: -46.84 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -59.37 2.71 -56.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285226623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.697 kcal (2) G-P(sol) polarization free energy of solvation -59.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds