Wall clock time and date at job start Tue Mar 31 2020 07:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46942 * 2 1 4 4 C 1.53002 * 109.47005 * 119.99674 * 2 1 3 5 5 H 1.08999 * 109.47217 * 295.51033 * 4 2 1 6 6 O 1.42905 * 109.46826 * 175.51316 * 4 2 1 7 7 C 1.50700 * 109.47222 * 55.51498 * 4 2 1 8 8 O 1.21288 * 120.00003 * 84.76174 * 7 4 2 9 9 N 1.34768 * 120.00079 * 264.76452 * 7 4 2 10 10 C 1.46505 * 119.99988 * 3.93103 * 9 7 4 11 11 C 1.50703 * 109.47095 * 264.92161 * 10 9 7 12 12 H 1.08002 * 119.99763 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99888 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00086 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99926 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47569 * 59.99814 * 15 13 11 17 17 H 1.48496 * 109.47289 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47181 * 300.00031 * 15 13 11 19 19 C 1.46504 * 120.00158 * 183.93330 * 9 7 4 20 20 C 1.50708 * 109.46900 * 269.99695 * 19 9 7 21 21 C 1.38222 * 119.61555 * 94.97751 * 20 19 9 22 22 C 1.38627 * 119.16085 * 179.79145 * 21 20 19 23 23 C 1.38674 * 118.42086 * 0.47179 * 22 21 20 24 24 C 1.38188 * 119.15817 * 359.50718 * 23 22 21 25 25 N 1.31854 * 119.61943 * 275.00216 * 20 19 9 26 26 H 1.08999 * 109.46926 * 186.02819 * 1 2 3 27 27 H 1.09003 * 109.46964 * 306.02590 * 1 2 3 28 28 H 1.08995 * 109.46913 * 66.02634 * 1 2 3 29 29 H 1.09001 * 109.47147 * 239.99852 * 2 1 3 30 30 H 1.09002 * 109.46841 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46841 * 299.99576 * 3 2 1 32 32 H 1.09001 * 109.47320 * 59.99958 * 3 2 1 33 33 H 0.96696 * 114.00011 * 300.00007 * 6 4 2 34 34 H 1.08996 * 109.47000 * 24.92007 * 10 9 7 35 35 H 1.08996 * 109.47278 * 144.92370 * 10 9 7 36 36 H 0.97006 * 120.00184 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47186 * 150.00169 * 19 9 7 38 38 H 1.08995 * 109.47206 * 29.99537 * 19 9 7 39 39 H 1.08002 * 120.41958 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.79458 * 180.23267 * 22 21 20 41 41 H 1.07998 * 120.42077 * 179.78232 * 23 22 21 42 42 H 1.07998 * 119.61117 * 180.24806 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7438 -0.1630 2.1374 6 8 3.4652 -0.8131 1.1978 7 6 1.4490 -2.1063 1.3062 8 8 1.9768 -3.0161 0.7024 9 7 0.3339 -2.3340 2.0280 10 6 -0.3525 -1.2199 2.6868 11 6 0.1158 -1.1157 4.1155 12 1 0.8514 -1.8096 4.4946 13 6 -0.3941 -0.1338 4.9381 14 7 -1.2895 0.7115 4.4763 15 14 0.1869 -0.0042 6.7087 16 1 1.6526 0.2332 6.7328 17 1 -0.5080 1.1257 7.3762 18 1 -0.1216 -1.2681 7.4248 19 6 -0.1919 -3.6957 2.1539 20 6 -1.1651 -3.9637 1.0349 21 6 -0.7265 -4.5903 -0.1165 22 6 -1.6307 -4.8362 -1.1381 23 6 -2.9461 -4.4319 -0.9668 24 6 -3.3115 -3.8112 0.2125 25 7 -2.4251 -3.5975 1.1652 26 1 -0.3633 -1.0220 0.1079 27 1 -0.3633 0.6044 0.8312 28 1 -0.3633 0.4175 -0.9390 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.8005 -1.2982 0.4314 34 1 -0.1260 -0.2921 2.1617 35 1 -1.4282 -1.3943 2.6690 36 1 -1.6480 1.4025 5.0550 37 1 -0.7015 -3.8013 3.1116 38 1 0.6303 -4.4091 2.0991 39 1 0.3070 -4.8872 -0.2177 40 1 -1.3173 -5.3274 -2.0475 41 1 -3.6767 -4.6041 -1.7433 42 1 -4.3349 -3.4970 0.3553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291395264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:11 Heat of formation + Delta-G solvation = -55.624630 kcal Electronic energy + Delta-G solvation = -24683.800045 eV Core-core repulsion = 21242.806108 eV Total energy + Delta-G solvation = -3440.993937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.23255 -39.45189 -36.59015 -35.32571 -33.78469 -32.80270 -32.19271 -31.42253 -27.95388 -27.21650 -26.60608 -25.27050 -23.32617 -22.78607 -21.97270 -20.47501 -18.83804 -16.97523 -16.92665 -16.42413 -16.21686 -15.78491 -15.44294 -15.26606 -14.54964 -14.51481 -14.01320 -13.75494 -13.23091 -13.00515 -12.95641 -12.71675 -12.46821 -12.31767 -12.06345 -11.87913 -11.56037 -11.52990 -11.30320 -11.17101 -10.96603 -10.78911 -10.73624 -10.49589 -10.13181 -9.88677 -9.70884 -9.62733 -9.18097 -9.02161 -8.67561 -8.46131 -7.80425 -6.14748 -4.21573 1.28341 1.49695 3.17732 3.28654 3.32874 3.36829 3.70259 4.21900 4.37168 4.57510 4.80017 4.95188 5.01408 5.09243 5.18571 5.19168 5.24254 5.32556 5.37048 5.58308 5.76935 5.82988 5.88390 5.94190 6.00356 6.09506 6.21240 6.21859 6.24087 6.34095 6.35817 6.39547 6.58320 6.62824 6.80825 6.90606 7.25621 7.49486 7.79179 7.93950 8.07260 8.23984 8.32980 8.74655 8.91088 9.45542 10.91946 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.006831 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.786594 B = 4098.213655 C = 5318.990637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.140 4.140 4 C 0.093 3.907 5 H 0.140 0.860 6 O -0.542 6.542 7 C 0.495 3.505 8 O -0.575 6.575 9 N -0.578 5.578 10 C 0.222 3.778 11 C -0.542 4.542 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.165 3.835 20 C 0.121 3.879 21 C -0.152 4.152 22 C -0.084 4.084 23 C -0.181 4.181 24 C 0.095 3.905 25 N -0.462 5.462 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.373 0.627 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.265 0.735 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -5.016 -11.047 12.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.031 3.969 5 H 0.157 0.843 6 O -0.346 6.346 7 C 0.283 3.717 8 O -0.456 6.456 9 N -0.309 5.309 10 C 0.103 3.897 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.041 3.959 20 C -0.018 4.018 21 C -0.172 4.172 22 C -0.110 4.110 23 C -0.202 4.202 24 C -0.063 4.063 25 N -0.172 5.172 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.220 0.780 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.613 -4.539 -9.939 10.943 hybrid contribution 0.286 -0.622 -0.326 0.759 sum -0.327 -5.161 -10.265 11.494 Atomic orbital electron populations 1.22120 0.94089 1.02869 1.02287 1.21636 0.97050 0.97295 0.97251 1.21758 1.01245 0.94825 1.01930 1.22185 0.80962 0.92745 1.01032 0.84287 1.86613 1.18941 1.78132 1.50958 1.21398 0.80472 0.91520 0.78298 1.90554 1.62365 1.46257 1.46457 1.48261 1.25294 1.08579 1.48733 1.19916 0.93825 0.83715 0.92242 1.21471 1.24890 1.15593 0.96106 0.92132 1.24899 0.94655 0.95310 0.98714 1.69909 1.28493 1.17713 1.36600 0.86589 0.79041 0.77692 0.84369 1.20045 1.21176 1.20150 1.20168 0.94310 0.85537 0.95905 1.21861 0.91550 0.92990 0.95406 1.22125 1.01072 0.99888 0.94107 1.21540 0.93320 0.97527 0.98622 1.22088 0.97062 1.01557 0.99447 1.22767 0.99111 0.95053 0.89368 1.67605 1.02281 1.16080 1.31186 0.92353 0.90222 0.93055 0.91274 0.92219 0.92926 0.91903 0.77983 0.92859 0.93486 0.92495 0.88325 0.89486 0.84484 0.85349 0.85335 0.83065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 7.69 37.16 0.29 -2.36 16 2 C -0.11 -1.82 2.71 -90.62 -0.25 -2.06 16 3 C -0.14 -2.01 9.09 37.16 0.34 -1.67 16 4 C 0.09 1.75 2.51 -27.88 -0.07 1.68 16 5 H 0.14 2.98 6.17 -51.93 -0.32 2.66 16 6 O -0.54 -9.75 12.76 -52.10 -0.66 -10.42 16 7 C 0.50 10.09 5.69 -10.99 -0.06 10.03 16 8 O -0.57 -12.07 15.92 -11.32 -0.18 -12.25 16 9 N -0.58 -12.06 1.95 -176.43 -0.34 -12.41 16 10 C 0.22 5.21 3.87 -5.19 -0.02 5.19 16 11 C -0.54 -14.10 9.07 -34.44 -0.31 -14.41 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 15 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 C 0.17 3.14 5.70 -5.19 -0.03 3.12 16 20 C 0.12 2.13 6.36 -82.58 -0.53 1.61 16 21 C -0.15 -2.34 9.72 -39.44 -0.38 -2.73 16 22 C -0.08 -1.08 10.18 -39.28 -0.40 -1.48 16 23 C -0.18 -2.22 10.11 -39.44 -0.40 -2.61 16 24 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 25 N -0.46 -8.28 10.27 -9.47 -0.10 -8.37 16 26 H 0.06 1.09 5.96 -51.93 -0.31 0.78 16 27 H 0.08 1.48 6.33 -51.93 -0.33 1.15 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.82 7.81 -51.93 -0.41 0.41 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.37 5.58 8.65 45.56 0.39 5.98 16 34 H 0.05 1.25 3.13 -51.93 -0.16 1.09 16 35 H 0.05 1.21 8.11 -51.93 -0.42 0.79 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.10 1.94 8.07 -51.93 -0.42 1.52 16 38 H 0.09 1.57 7.38 -51.93 -0.38 1.19 16 39 H 0.14 2.11 7.85 -52.49 -0.41 1.69 16 40 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -29.55 346.71 -7.74 -37.28 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.27 Total: 11.63 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.12 Total: -2.85 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.30 Total: -44.36 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.85 Total: -22.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.55 -7.74 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291395264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.342 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds