Wall clock time and date at job start Tue Mar 31 2020 07:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46942 * 2 1 4 4 C 1.53002 * 109.47005 * 119.99674 * 2 1 3 5 5 H 1.08999 * 109.47217 * 295.51033 * 4 2 1 6 6 O 1.42905 * 109.46826 * 175.51316 * 4 2 1 7 7 C 1.50700 * 109.47222 * 55.51498 * 4 2 1 8 8 O 1.21288 * 120.00003 * 84.76174 * 7 4 2 9 9 N 1.34768 * 120.00079 * 264.76452 * 7 4 2 10 10 C 1.46505 * 119.99988 * 3.93103 * 9 7 4 11 11 C 1.50703 * 109.47095 * 264.92161 * 10 9 7 12 12 H 1.08002 * 119.99763 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99888 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00086 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99926 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47569 * 59.99814 * 15 13 11 17 17 H 1.48496 * 109.47289 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47181 * 300.00031 * 15 13 11 19 19 C 1.46504 * 120.00158 * 183.93330 * 9 7 4 20 20 C 1.50708 * 109.46900 * 269.99695 * 19 9 7 21 21 C 1.38222 * 119.61555 * 94.97751 * 20 19 9 22 22 C 1.38627 * 119.16085 * 179.79145 * 21 20 19 23 23 C 1.38674 * 118.42086 * 0.47179 * 22 21 20 24 24 C 1.38188 * 119.15817 * 359.50718 * 23 22 21 25 25 N 1.31854 * 119.61943 * 275.00216 * 20 19 9 26 26 H 1.08999 * 109.46926 * 186.02819 * 1 2 3 27 27 H 1.09003 * 109.46964 * 306.02590 * 1 2 3 28 28 H 1.08995 * 109.46913 * 66.02634 * 1 2 3 29 29 H 1.09001 * 109.47147 * 239.99852 * 2 1 3 30 30 H 1.09002 * 109.46841 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46841 * 299.99576 * 3 2 1 32 32 H 1.09001 * 109.47320 * 59.99958 * 3 2 1 33 33 H 0.96696 * 114.00011 * 300.00007 * 6 4 2 34 34 H 1.08996 * 109.47000 * 24.92007 * 10 9 7 35 35 H 1.08996 * 109.47278 * 144.92370 * 10 9 7 36 36 H 0.97006 * 120.00184 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47186 * 150.00169 * 19 9 7 38 38 H 1.08995 * 109.47206 * 29.99537 * 19 9 7 39 39 H 1.08002 * 120.41958 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.79458 * 180.23267 * 22 21 20 41 41 H 1.07998 * 120.42077 * 179.78232 * 23 22 21 42 42 H 1.07998 * 119.61117 * 180.24806 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7438 -0.1630 2.1374 6 8 3.4652 -0.8131 1.1978 7 6 1.4490 -2.1063 1.3062 8 8 1.9768 -3.0161 0.7024 9 7 0.3339 -2.3340 2.0280 10 6 -0.3525 -1.2199 2.6868 11 6 0.1158 -1.1157 4.1155 12 1 0.8514 -1.8096 4.4946 13 6 -0.3941 -0.1338 4.9381 14 7 -1.2895 0.7115 4.4763 15 14 0.1869 -0.0042 6.7087 16 1 1.6526 0.2332 6.7328 17 1 -0.5080 1.1257 7.3762 18 1 -0.1216 -1.2681 7.4248 19 6 -0.1919 -3.6957 2.1539 20 6 -1.1651 -3.9637 1.0349 21 6 -0.7265 -4.5903 -0.1165 22 6 -1.6307 -4.8362 -1.1381 23 6 -2.9461 -4.4319 -0.9668 24 6 -3.3115 -3.8112 0.2125 25 7 -2.4251 -3.5975 1.1652 26 1 -0.3633 -1.0220 0.1079 27 1 -0.3633 0.6044 0.8312 28 1 -0.3633 0.4175 -0.9390 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.8005 -1.2982 0.4314 34 1 -0.1260 -0.2921 2.1617 35 1 -1.4282 -1.3943 2.6690 36 1 -1.6480 1.4025 5.0550 37 1 -0.7015 -3.8013 3.1116 38 1 0.6303 -4.4091 2.0991 39 1 0.3070 -4.8872 -0.2177 40 1 -1.3173 -5.3274 -2.0475 41 1 -3.6767 -4.6041 -1.7433 42 1 -4.3349 -3.4970 0.3553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291395264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:10 Heat of formation + Delta-G solvation = -73.941016 kcal Electronic energy + Delta-G solvation = -24684.594303 eV Core-core repulsion = 21242.806108 eV Total energy + Delta-G solvation = -3441.788195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65697 -40.77679 -38.06616 -37.00157 -35.17339 -34.69259 -33.36632 -32.78452 -29.49301 -28.93049 -27.94148 -26.76449 -24.83651 -24.30730 -23.22017 -21.83154 -20.40447 -18.79860 -18.45402 -17.90064 -17.64596 -17.02702 -16.98961 -16.52583 -16.36461 -15.91342 -15.45359 -15.21458 -14.55684 -14.43240 -14.25533 -14.12468 -13.99148 -13.75003 -13.65858 -13.38021 -13.04989 -12.95199 -12.77053 -12.73889 -12.62560 -12.49541 -12.17391 -12.04179 -11.85447 -11.64920 -11.26570 -10.80429 -10.59880 -10.49487 -10.33688 -9.90759 -9.50523 -8.19080 -6.32935 0.14108 0.40658 1.41876 1.42492 1.49673 1.57956 2.19475 2.42743 2.97972 3.11179 3.32990 3.41068 3.60671 3.75598 3.84549 3.93848 4.03371 4.18362 4.25117 4.26875 4.47320 4.51879 4.58561 4.66221 4.73243 4.76855 4.81589 4.88407 4.94414 5.00558 5.08608 5.23550 5.25717 5.28264 5.35361 5.41956 5.62131 5.76556 5.82958 6.06806 6.50373 6.65262 6.78646 7.13658 7.17344 7.38375 8.86292 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.006831 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.786594 B = 4098.213655 C = 5318.990637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.097 3.903 5 H 0.109 0.891 6 O -0.548 6.548 7 C 0.492 3.508 8 O -0.581 6.581 9 N -0.581 5.581 10 C 0.244 3.756 11 C -0.555 4.555 12 H 0.049 0.951 13 C 0.025 3.975 14 N -0.914 5.914 15 Si 0.953 3.047 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.274 1.274 19 C 0.164 3.836 20 C 0.097 3.903 21 C -0.159 4.159 22 C -0.078 4.078 23 C -0.163 4.163 24 C 0.080 3.920 25 N -0.504 5.504 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.387 0.613 34 H 0.054 0.946 35 H 0.018 0.982 36 H 0.268 0.732 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.133 0.867 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -5.270 -13.095 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.192 4.192 4 C 0.035 3.965 5 H 0.127 0.873 6 O -0.354 6.354 7 C 0.281 3.719 8 O -0.464 6.464 9 N -0.311 5.311 10 C 0.124 3.876 11 C -0.593 4.593 12 H 0.068 0.932 13 C -0.176 4.176 14 N -0.553 5.553 15 Si 0.778 3.222 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.199 1.199 19 C 0.041 3.959 20 C -0.041 4.041 21 C -0.180 4.180 22 C -0.104 4.104 23 C -0.182 4.182 24 C -0.078 4.078 25 N -0.214 5.214 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.237 0.763 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.183 0.817 41 H 0.189 0.811 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.643 -4.813 -11.996 12.942 hybrid contribution 0.253 -0.609 0.239 0.701 sum -0.391 -5.422 -11.757 12.953 Atomic orbital electron populations 1.22004 0.94789 1.01128 1.02615 1.21610 0.96242 0.98320 0.96220 1.21725 1.01731 0.93398 1.02354 1.22030 0.81494 0.91628 1.01335 0.87321 1.86576 1.18251 1.78456 1.52106 1.21696 0.80130 0.92165 0.77927 1.90534 1.62464 1.46642 1.46742 1.48185 1.25563 1.08667 1.48646 1.19465 0.92109 0.84611 0.91413 1.21695 1.24687 1.15416 0.97550 0.93236 1.25585 0.94734 0.95006 1.02238 1.69997 1.29295 1.18155 1.37845 0.85692 0.78615 0.77795 0.80100 1.19777 1.20350 1.19925 1.20155 0.94874 0.84671 0.96245 1.21525 0.91477 0.95281 0.95825 1.22127 1.01540 1.00055 0.94255 1.21970 0.93017 0.96543 0.98854 1.22515 0.97617 0.98941 0.99166 1.23265 0.99512 0.95252 0.89725 1.67492 1.02932 1.17544 1.33388 0.94529 0.92603 0.90416 0.89574 0.91381 0.90422 0.93543 0.76287 0.92799 0.96378 0.92312 0.90252 0.89145 0.84893 0.81679 0.81065 0.80978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 7.69 71.98 0.55 -4.43 16 2 C -0.10 -3.26 2.71 -10.79 -0.03 -3.29 16 3 C -0.13 -3.65 9.09 71.98 0.65 -2.99 16 4 C 0.10 3.70 2.51 29.85 0.08 3.78 16 5 H 0.11 4.84 6.17 -2.39 -0.01 4.83 16 6 O -0.55 -19.35 12.76 -132.85 -1.70 -21.04 16 7 C 0.49 20.44 5.69 87.66 0.50 20.94 16 8 O -0.58 -24.46 15.92 13.07 0.21 -24.25 16 9 N -0.58 -25.30 1.95 -830.48 -1.62 -26.92 16 10 C 0.24 12.06 3.87 85.63 0.33 12.39 16 11 C -0.55 -30.03 9.07 25.60 0.23 -29.80 16 12 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 13 C 0.03 1.36 5.46 84.65 0.46 1.83 16 14 N -0.91 -51.18 13.29 21.44 0.28 -50.90 16 15 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 C 0.16 6.61 5.70 85.63 0.49 7.10 16 20 C 0.10 3.51 6.36 42.55 0.27 3.78 16 21 C -0.16 -4.81 9.72 22.36 0.22 -4.60 16 22 C -0.08 -1.77 10.18 22.47 0.23 -1.54 16 23 C -0.16 -3.43 10.11 22.36 0.23 -3.21 16 24 C 0.08 2.19 11.18 84.67 0.95 3.14 16 25 N -0.50 -18.42 10.27 -183.88 -1.89 -20.31 16 26 H 0.04 1.38 5.96 -2.39 -0.01 1.36 16 27 H 0.06 2.13 6.33 -2.39 -0.02 2.12 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 1.72 7.81 -2.39 -0.02 1.71 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.39 11.07 8.65 -74.06 -0.64 10.43 16 34 H 0.05 2.67 3.13 -2.39 -0.01 2.66 16 35 H 0.02 0.99 8.11 -2.39 -0.02 0.97 16 36 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 37 H 0.08 3.38 8.07 -2.39 -0.02 3.36 16 38 H 0.09 3.45 7.38 -2.39 -0.02 3.43 16 39 H 0.13 4.04 7.85 -2.91 -0.02 4.02 16 40 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -65.43 346.71 2.87 -62.57 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.39 Total: 32.55 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.16 Total: 3.11 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.22 Total: -98.13 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.49 Total: -45.29 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -65.43 2.87 -62.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291395264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.375 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds