Wall clock time and date at job start Tue Mar 31 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 N 1.46901 * 109.47249 * 239.99380 * 2 1 3 5 5 C 1.46905 * 110.99615 * 60.00485 * 4 2 1 6 6 C 1.53001 * 109.46891 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47049 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47067 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00359 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99783 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00191 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99896 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46821 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46787 * 119.99968 * 12 10 8 15 15 H 1.48499 * 109.47215 * 240.00279 * 12 10 8 16 16 C 1.50708 * 109.46840 * 119.99687 * 2 1 3 17 17 C 1.38256 * 119.99862 * 129.03397 * 16 2 1 18 18 C 1.38206 * 120.00144 * 179.72794 * 17 16 2 19 19 C 1.38262 * 119.99880 * 0.27402 * 18 17 16 20 20 C 1.38212 * 119.99905 * 359.97438 * 19 18 17 21 21 C 1.38209 * 119.99990 * 309.22767 * 16 2 1 22 22 N 1.48020 * 120.00076 * 0.04124 * 21 16 2 23 23 O 1.21806 * 119.99625 * 161.62913 * 22 21 16 24 24 O 1.21799 * 119.99947 * 341.62335 * 22 21 16 25 25 H 1.08997 * 109.47313 * 270.40927 * 1 2 3 26 26 H 1.08996 * 109.47065 * 30.41492 * 1 2 3 27 27 H 1.09000 * 109.46746 * 150.40992 * 1 2 3 28 28 H 1.09002 * 109.46694 * 204.87639 * 3 2 1 29 29 H 1.08991 * 109.47020 * 324.87241 * 3 2 1 30 30 H 1.08998 * 109.47364 * 84.87535 * 3 2 1 31 31 H 1.00890 * 111.00667 * 296.04843 * 4 2 1 32 32 H 1.08996 * 109.46961 * 299.99535 * 5 4 2 33 33 H 1.08999 * 109.47048 * 59.99831 * 5 4 2 34 34 H 1.08996 * 109.47246 * 299.99738 * 6 5 4 35 35 H 1.08999 * 109.47105 * 60.00243 * 6 5 4 36 36 H 1.09002 * 109.47051 * 300.00554 * 7 6 5 37 37 H 1.09003 * 109.46715 * 59.99794 * 7 6 5 38 38 H 0.97003 * 120.00175 * 179.97438 * 11 10 8 39 39 H 1.08003 * 119.99700 * 0.02562 * 17 16 2 40 40 H 1.07999 * 120.00790 * 180.25972 * 18 17 16 41 41 H 1.08002 * 119.99977 * 179.97438 * 19 18 17 42 42 H 1.07998 * 120.00277 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 1.5487 -0.0265 -2.4211 6 6 2.0783 -0.7744 -3.6462 7 6 1.5873 -0.0810 -4.9187 8 6 2.1094 -0.8173 -6.1254 9 1 2.7291 -1.6925 -5.9976 10 6 1.7951 -0.3742 -7.3926 11 7 1.0401 0.6913 -7.5483 12 14 2.4418 -1.2873 -8.8885 13 1 3.2609 -2.4443 -8.4462 14 1 1.2996 -1.7730 -9.7039 15 1 3.2783 -0.3710 -9.7044 16 6 2.0323 -0.7104 1.2306 17 6 2.9736 -1.7161 1.1124 18 6 3.4385 -2.3637 2.2413 19 6 2.9579 -2.0098 3.4885 20 6 2.0130 -1.0079 3.6062 21 6 1.5489 -0.3593 2.4769 22 7 0.5373 0.7139 2.6029 23 8 -0.1308 0.8048 3.6174 24 8 0.3730 1.5060 1.6924 25 1 -0.3634 0.0073 1.0276 26 1 -0.3633 0.8862 -0.5202 27 1 -0.3633 -0.8937 -0.5075 28 1 3.0401 1.4742 -0.4323 29 1 1.3687 2.0651 -0.5913 30 1 2.0745 1.8157 1.0235 31 1 1.7503 -1.6649 -1.1909 32 1 0.4589 -0.0267 -2.4379 33 1 1.9122 1.0010 -2.4378 34 1 3.1682 -0.7739 -3.6292 35 1 1.7152 -1.8020 -3.6296 36 1 0.4974 -0.0819 -4.9354 37 1 1.9501 0.9467 -4.9354 38 1 0.8193 1.0032 -8.4398 39 1 3.3493 -1.9922 0.1382 40 1 4.1769 -3.1464 2.1495 41 1 3.3208 -2.5162 4.3707 42 1 1.6373 -0.7317 4.5803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292055354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:19 Heat of formation + Delta-G solvation = 45.704535 kcal Electronic energy + Delta-G solvation = -23594.579816 eV Core-core repulsion = 20157.979842 eV Total energy + Delta-G solvation = -3436.599974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = -0.28 seconds Orbital eigenvalues (eV) -42.69061 -40.05559 -37.97398 -36.57099 -34.24126 -32.63452 -32.06327 -30.79641 -29.49463 -27.47563 -26.72909 -26.03997 -23.83369 -22.94143 -22.12871 -20.28488 -19.72031 -19.22744 -18.73662 -17.93582 -16.75100 -16.26176 -15.89134 -15.35074 -15.00099 -14.59746 -14.48524 -14.30277 -13.99347 -13.32194 -13.03235 -12.93252 -12.56012 -12.47417 -12.24720 -12.07449 -11.74780 -11.46841 -11.36836 -11.15599 -11.09010 -10.87634 -10.67826 -10.48521 -10.46767 -10.42096 -9.87675 -9.70226 -9.45105 -9.35334 -9.05016 -8.35033 -8.32768 -5.99273 -4.01476 -0.29985 0.65743 1.13936 1.28534 2.99614 3.31103 3.38553 3.42465 3.84828 4.06339 4.30191 4.42023 4.48019 4.57085 4.75014 4.78236 5.00963 5.04113 5.28004 5.36599 5.43986 5.51232 5.64307 5.73028 5.74905 5.78130 5.87198 5.94698 5.98254 6.07551 6.12540 6.25927 6.32133 6.44822 6.68538 6.74971 7.11430 7.22315 7.47324 7.56287 7.69024 7.83676 8.01134 8.43930 9.05993 9.62561 11.12129 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027731 B = 0.003100 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.444621 B = 9028.655308 C = 9804.421947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.144 3.856 3 C -0.125 4.125 4 N -0.678 5.678 5 C 0.057 3.943 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.895 5.895 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.001 4.001 17 C -0.104 4.104 18 C -0.069 4.069 19 C -0.126 4.126 20 C -0.060 4.060 21 C -0.041 4.041 22 N 0.024 4.976 23 O -0.184 6.184 24 O -0.126 6.126 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.336 0.664 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.014 0.986 37 H 0.017 0.983 38 H 0.260 0.740 39 H 0.162 0.838 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -4.866 24.010 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.052 3.948 3 C -0.183 4.183 4 N -0.309 5.309 5 C -0.071 4.071 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.535 5.535 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.003 4.003 17 C -0.122 4.122 18 C -0.087 4.087 19 C -0.145 4.145 20 C -0.079 4.079 21 C -0.125 4.125 22 N 0.538 4.462 23 O -0.391 6.391 24 O -0.344 6.344 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.032 0.968 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.179 0.821 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.520 -4.939 23.865 24.786 hybrid contribution -0.968 -0.471 -0.801 1.342 sum 3.552 -5.409 23.064 23.954 Atomic orbital electron populations 1.22969 0.95207 1.02753 1.02088 1.19905 0.92886 0.94907 0.87092 1.22058 1.01452 0.92165 1.02610 1.60899 1.63022 1.05838 1.01168 1.22188 0.97469 0.99203 0.88212 1.21628 1.00372 0.98409 0.94025 1.19060 0.96321 0.95827 0.90343 1.21281 1.31189 1.12234 0.91003 0.92674 1.25034 0.95253 0.95119 0.99130 1.69974 1.37331 1.23775 1.22394 0.86553 0.78696 0.79846 0.83005 1.19760 1.21067 1.21009 1.19994 0.93569 0.94290 0.92470 1.21386 0.95551 0.94376 1.00926 1.21701 0.97195 0.97696 0.92137 1.21195 0.97242 0.97278 0.98784 1.20974 0.95264 0.93969 0.97714 1.20901 0.98640 0.96454 0.96458 1.43556 1.01039 1.01591 1.00039 1.94525 1.45092 1.79395 1.20086 1.94582 1.71393 1.36880 1.31581 0.93132 0.90163 0.93220 0.92021 0.91096 0.91612 0.84553 0.95022 0.90785 0.92585 0.93784 0.96786 0.96511 0.93073 0.82088 0.84003 0.83855 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 6.26 37.16 0.23 -2.04 16 2 C 0.14 1.81 0.68 -132.75 -0.09 1.72 16 3 C -0.13 -1.63 6.45 37.16 0.24 -1.39 16 4 N -0.68 -9.06 4.81 -101.13 -0.49 -9.54 16 5 C 0.06 0.94 5.09 -3.82 -0.02 0.92 16 6 C -0.11 -2.12 5.41 -26.73 -0.14 -2.27 16 7 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 12 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 C 0.00 -0.02 4.72 -104.62 -0.49 -0.51 16 17 C -0.10 -0.93 9.12 -39.59 -0.36 -1.29 16 18 C -0.07 -0.45 10.05 -39.58 -0.40 -0.85 16 19 C -0.13 -0.79 10.05 -39.58 -0.40 -1.18 16 20 C -0.06 -0.51 9.58 -39.58 -0.38 -0.89 16 21 C -0.04 -0.46 6.04 -79.95 -0.48 -0.94 16 22 N 0.02 0.31 3.26 33.96 0.11 0.42 16 23 O -0.18 -2.53 18.58 -29.46 -0.55 -3.08 16 24 O -0.13 -1.76 10.75 -29.46 -0.32 -2.08 16 25 H 0.05 0.69 4.40 -51.98 -0.23 0.46 16 26 H 0.08 1.11 7.26 -51.93 -0.38 0.73 16 27 H 0.05 0.65 7.88 -51.93 -0.41 0.24 16 28 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.07 0.94 7.16 -51.93 -0.37 0.57 16 30 H 0.07 0.84 5.47 -51.93 -0.28 0.56 16 31 H 0.34 4.15 7.95 -39.30 -0.31 3.84 16 32 H 0.03 0.54 6.93 -51.93 -0.36 0.18 16 33 H 0.07 1.26 6.90 -51.93 -0.36 0.91 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.16 1.42 6.71 -52.48 -0.35 1.07 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 41 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 42 H 0.15 1.05 7.73 -52.49 -0.41 0.64 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -31.31 335.75 -9.27 -40.58 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.96 Total: 0.07 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -2.84 Total: -21.78 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.36 Total: -35.40 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.86 Total: -5.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.31 -9.27 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292055354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.281 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.28 seconds