Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 N 1.46901 * 109.47249 * 239.99380 * 2 1 3 5 5 C 1.46905 * 110.99615 * 60.00485 * 4 2 1 6 6 C 1.53001 * 109.46891 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47049 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47067 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00359 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99783 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00191 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99896 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46821 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46787 * 119.99968 * 12 10 8 15 15 H 1.48499 * 109.47215 * 240.00279 * 12 10 8 16 16 C 1.50708 * 109.46840 * 119.99687 * 2 1 3 17 17 C 1.38256 * 119.99862 * 129.03397 * 16 2 1 18 18 C 1.38206 * 120.00144 * 179.72794 * 17 16 2 19 19 C 1.38262 * 119.99880 * 0.27402 * 18 17 16 20 20 C 1.38212 * 119.99905 * 359.97438 * 19 18 17 21 21 C 1.38209 * 119.99990 * 309.22767 * 16 2 1 22 22 N 1.48020 * 120.00076 * 0.04124 * 21 16 2 23 23 O 1.21806 * 119.99625 * 161.62913 * 22 21 16 24 24 O 1.21799 * 119.99947 * 341.62335 * 22 21 16 25 25 H 1.08997 * 109.47313 * 270.40927 * 1 2 3 26 26 H 1.08996 * 109.47065 * 30.41492 * 1 2 3 27 27 H 1.09000 * 109.46746 * 150.40992 * 1 2 3 28 28 H 1.09002 * 109.46694 * 204.87639 * 3 2 1 29 29 H 1.08991 * 109.47020 * 324.87241 * 3 2 1 30 30 H 1.08998 * 109.47364 * 84.87535 * 3 2 1 31 31 H 1.00890 * 111.00667 * 296.04843 * 4 2 1 32 32 H 1.08996 * 109.46961 * 299.99535 * 5 4 2 33 33 H 1.08999 * 109.47048 * 59.99831 * 5 4 2 34 34 H 1.08996 * 109.47246 * 299.99738 * 6 5 4 35 35 H 1.08999 * 109.47105 * 60.00243 * 6 5 4 36 36 H 1.09002 * 109.47051 * 300.00554 * 7 6 5 37 37 H 1.09003 * 109.46715 * 59.99794 * 7 6 5 38 38 H 0.97003 * 120.00175 * 179.97438 * 11 10 8 39 39 H 1.08003 * 119.99700 * 0.02562 * 17 16 2 40 40 H 1.07999 * 120.00790 * 180.25972 * 18 17 16 41 41 H 1.08002 * 119.99977 * 179.97438 * 19 18 17 42 42 H 1.07998 * 120.00277 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 1.5487 -0.0265 -2.4211 6 6 2.0783 -0.7744 -3.6462 7 6 1.5873 -0.0810 -4.9187 8 6 2.1094 -0.8173 -6.1254 9 1 2.7291 -1.6925 -5.9976 10 6 1.7951 -0.3742 -7.3926 11 7 1.0401 0.6913 -7.5483 12 14 2.4418 -1.2873 -8.8885 13 1 3.2609 -2.4443 -8.4462 14 1 1.2996 -1.7730 -9.7039 15 1 3.2783 -0.3710 -9.7044 16 6 2.0323 -0.7104 1.2306 17 6 2.9736 -1.7161 1.1124 18 6 3.4385 -2.3637 2.2413 19 6 2.9579 -2.0098 3.4885 20 6 2.0130 -1.0079 3.6062 21 6 1.5489 -0.3593 2.4769 22 7 0.5373 0.7139 2.6029 23 8 -0.1308 0.8048 3.6174 24 8 0.3730 1.5060 1.6924 25 1 -0.3634 0.0073 1.0276 26 1 -0.3633 0.8862 -0.5202 27 1 -0.3633 -0.8937 -0.5075 28 1 3.0401 1.4742 -0.4323 29 1 1.3687 2.0651 -0.5913 30 1 2.0745 1.8157 1.0235 31 1 1.7503 -1.6649 -1.1909 32 1 0.4589 -0.0267 -2.4379 33 1 1.9122 1.0010 -2.4378 34 1 3.1682 -0.7739 -3.6292 35 1 1.7152 -1.8020 -3.6296 36 1 0.4974 -0.0819 -4.9354 37 1 1.9501 0.9467 -4.9354 38 1 0.8193 1.0032 -8.4398 39 1 3.3493 -1.9922 0.1382 40 1 4.1769 -3.1464 2.1495 41 1 3.3208 -2.5162 4.3707 42 1 1.6373 -0.7317 4.5803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292055354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = 28.279533 kcal Electronic energy + Delta-G solvation = -23595.335421 eV Core-core repulsion = 20157.979842 eV Total energy + Delta-G solvation = -3437.355579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.73 seconds Orbital eigenvalues (eV) -43.61595 -40.88121 -38.92690 -37.63883 -35.97136 -34.20468 -32.97684 -31.87819 -30.78015 -28.55934 -27.96656 -27.43000 -25.05157 -24.00433 -23.21532 -21.95205 -20.74460 -20.08880 -19.67773 -18.88876 -18.46857 -17.55468 -16.72366 -16.55334 -16.36165 -15.85865 -15.50606 -15.36051 -15.09574 -14.58265 -14.27467 -14.02446 -13.81369 -13.61879 -13.43511 -13.36079 -13.17305 -12.81512 -12.72736 -12.44693 -12.34971 -12.26035 -12.14414 -12.05224 -11.65142 -11.58811 -11.36405 -11.33685 -11.08602 -10.55055 -10.52540 -10.13347 -9.51480 -8.19116 -6.30135 -1.16123 0.02648 0.31206 0.44184 1.40788 1.40998 1.54443 2.36780 2.41482 2.87190 3.14270 3.22893 3.55015 3.79011 3.87283 3.95819 4.01089 4.12638 4.26864 4.27740 4.38898 4.42633 4.58838 4.69651 4.74230 4.79282 4.87177 4.93180 4.94882 5.01181 5.11171 5.13756 5.22718 5.23420 5.29182 5.36813 5.53915 5.62381 5.76803 5.87504 5.94953 6.27028 6.36383 6.53445 6.87717 7.39283 8.93044 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027731 B = 0.003100 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.444621 B = 9028.655308 C = 9804.421947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 C -0.122 4.122 4 N -0.666 5.666 5 C 0.071 3.929 6 C -0.090 4.090 7 C 0.024 3.976 8 C -0.540 4.540 9 H 0.062 0.938 10 C -0.003 4.003 11 N -0.935 5.935 12 Si 0.966 3.034 13 H -0.260 1.260 14 H -0.279 1.279 15 H -0.279 1.279 16 C -0.020 4.020 17 C -0.111 4.111 18 C -0.052 4.052 19 C -0.110 4.110 20 C -0.063 4.063 21 C -0.061 4.061 22 N 0.026 4.974 23 O -0.197 6.197 24 O -0.157 6.157 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.346 0.654 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.052 0.948 36 H -0.012 1.012 37 H -0.010 1.010 38 H 0.263 0.737 39 H 0.163 0.837 40 H 0.179 0.821 41 H 0.184 0.816 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -7.644 25.359 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.057 3.943 3 C -0.179 4.179 4 N -0.298 5.298 5 C -0.057 4.057 6 C -0.128 4.128 7 C -0.013 4.013 8 C -0.578 4.578 9 H 0.080 0.920 10 C -0.201 4.201 11 N -0.575 5.575 12 Si 0.790 3.210 13 H -0.183 1.183 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.022 4.022 17 C -0.130 4.130 18 C -0.070 4.070 19 C -0.128 4.128 20 C -0.082 4.082 21 C -0.144 4.144 22 N 0.535 4.465 23 O -0.404 6.404 24 O -0.370 6.370 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.165 0.835 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.006 0.994 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.180 0.820 40 H 0.197 0.803 41 H 0.201 0.799 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.573 -7.704 25.215 27.173 hybrid contribution -1.564 0.332 -1.119 1.951 sum 5.009 -7.372 24.097 25.692 Atomic orbital electron populations 1.22911 0.96082 1.01948 1.01630 1.19777 0.92223 0.94735 0.87584 1.21996 1.00829 0.92712 1.02369 1.60784 1.62604 1.06193 1.00170 1.21848 0.96784 0.98562 0.88534 1.21355 1.00264 0.98421 0.92719 1.18972 0.94586 0.94892 0.92888 1.21735 1.31294 1.12618 0.92152 0.91990 1.26014 0.95393 0.95968 1.02708 1.70113 1.38622 1.25453 1.23359 0.85389 0.78215 0.78759 0.78620 1.18340 1.20509 1.20454 1.19846 0.95229 0.95703 0.91438 1.21521 0.95163 0.94087 1.02196 1.22144 0.96525 0.97170 0.91146 1.21691 0.95292 0.95661 1.00184 1.21331 0.95508 0.94064 0.97275 1.21106 0.99026 0.96697 0.97607 1.43928 1.01165 1.01849 0.99533 1.94491 1.45806 1.79802 1.20330 1.94575 1.72349 1.38171 1.31879 0.93415 0.91531 0.93347 0.92395 0.92293 0.91523 0.83488 0.95773 0.91629 0.92370 0.92931 0.99362 0.99133 0.92844 0.81985 0.80324 0.79879 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 6.26 71.98 0.45 -4.16 16 2 C 0.15 3.76 0.68 2.78 0.00 3.76 16 3 C -0.12 -3.29 6.45 71.98 0.46 -2.83 16 4 N -0.67 -17.50 4.81 -473.87 -2.28 -19.78 16 5 C 0.07 2.41 5.09 86.30 0.44 2.85 16 6 C -0.09 -3.59 5.41 30.60 0.17 -3.43 16 7 C 0.02 1.29 4.97 29.85 0.15 1.44 16 8 C -0.54 -30.83 9.11 25.60 0.23 -30.59 16 9 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 10 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 11 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 12 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 13 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 16 C -0.02 -0.43 4.72 -19.86 -0.09 -0.52 16 17 C -0.11 -1.69 9.12 22.27 0.20 -1.49 16 18 C -0.05 -0.44 10.05 22.27 0.22 -0.21 16 19 C -0.11 -0.85 10.05 22.27 0.22 -0.62 16 20 C -0.06 -0.89 9.58 22.27 0.21 -0.67 16 21 C -0.06 -1.30 6.04 36.37 0.22 -1.08 16 22 N 0.03 0.70 3.26 -46.46 -0.15 0.55 16 23 O -0.20 -5.52 18.58 18.88 0.35 -5.17 16 24 O -0.16 -4.60 10.75 18.89 0.20 -4.40 16 25 H 0.05 1.35 4.40 -3.21 -0.01 1.33 16 26 H 0.07 1.97 7.26 -2.39 -0.02 1.96 16 27 H 0.05 1.30 7.88 -2.39 -0.02 1.29 16 28 H 0.06 1.57 8.09 -2.39 -0.02 1.55 16 29 H 0.06 1.69 7.16 -2.39 -0.02 1.67 16 30 H 0.07 1.79 5.47 -2.39 -0.01 1.78 16 31 H 0.35 8.12 7.95 -89.70 -0.71 7.41 16 32 H 0.02 0.85 6.93 -2.39 -0.02 0.83 16 33 H 0.07 2.33 6.90 -2.39 -0.02 2.31 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.16 2.41 6.71 -2.91 -0.02 2.40 16 40 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 41 H 0.18 0.02 8.06 -2.91 -0.02 0.00 16 42 H 0.16 1.85 7.73 -2.91 -0.02 1.82 16 Total: -1.00 -70.00 335.75 4.11 -65.89 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.32 Total: 11.13 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.36 Total: -37.29 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -2.15 Total: -76.54 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.55 Total: -9.57 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.00 4.11 -65.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292055354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.170 kcal (2) G-P(sol) polarization free energy of solvation -69.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.73 seconds