Wall clock time and date at job start Tue Mar 31 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47025 * 2 1 4 4 N 1.30621 * 125.42388 * 89.97176 * 3 2 1 5 5 C 1.33693 * 108.99237 * 179.75077 * 4 3 2 6 6 C 1.50697 * 126.27400 * 180.27299 * 5 4 3 7 7 C 1.36340 * 107.45590 * 0.43280 * 5 4 3 8 8 C 1.46726 * 126.64704 * 179.83871 * 7 5 4 9 9 O 1.21679 * 119.99781 * 353.08197 * 8 7 5 10 10 N 1.34769 * 120.00009 * 172.80360 * 8 7 5 11 11 C 1.46505 * 120.00274 * 4.23441 * 10 8 7 12 12 C 1.50698 * 109.46906 * 83.19292 * 11 10 8 13 13 H 1.08003 * 120.00186 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00005 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99958 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00238 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47066 * 89.99632 * 16 14 12 18 18 H 1.48501 * 109.47202 * 209.99896 * 16 14 12 19 19 H 1.48498 * 109.46840 * 329.99893 * 16 14 12 20 20 C 1.46497 * 120.00165 * 184.23473 * 10 8 7 21 21 C 1.52997 * 109.47401 * 85.15230 * 20 10 8 22 22 C 1.52999 * 117.50297 * 243.75174 * 21 20 10 23 23 C 1.52997 * 117.50199 * 175.08821 * 21 20 10 24 24 O 1.33671 * 125.42268 * 270.00031 * 3 2 1 25 25 H 1.09001 * 109.46799 * 60.00267 * 1 2 3 26 26 H 1.09001 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47180 * 299.99973 * 1 2 3 28 28 H 1.08998 * 109.47180 * 240.00027 * 2 1 3 29 29 H 1.09001 * 109.46799 * 119.99733 * 2 1 3 30 30 H 1.09006 * 109.47464 * 270.19316 * 6 5 4 31 31 H 1.09003 * 109.47312 * 30.18722 * 6 5 4 32 32 H 1.08997 * 109.47574 * 150.18942 * 6 5 4 33 33 H 1.09003 * 109.46976 * 203.19068 * 11 10 8 34 34 H 1.08997 * 109.47129 * 323.19053 * 11 10 8 35 35 H 0.97003 * 119.99681 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47550 * 205.15696 * 20 10 8 37 37 H 1.09005 * 109.47281 * 325.15825 * 20 10 8 38 38 H 1.09008 * 115.54873 * 29.42041 * 21 20 10 39 39 H 1.08997 * 117.49800 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.49847 * 145.01638 * 22 21 20 41 41 H 1.08997 * 117.50366 * 214.98206 * 23 21 20 42 42 H 1.08994 * 117.49965 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2842 2.1348 1.0644 5 6 2.7170 3.3419 0.6862 6 6 3.1234 4.4697 1.5993 7 6 2.7198 3.3668 -0.6769 8 6 3.1172 4.4913 -1.5315 9 8 3.3705 5.5729 -1.0349 10 7 3.2071 4.3248 -2.8658 11 6 2.8191 3.0490 -3.4726 12 6 1.3262 3.0232 -3.6764 13 1 0.7263 3.8719 -3.3828 14 6 0.7259 1.9155 -4.2366 15 7 1.4564 0.8817 -4.5936 16 14 -1.1248 1.8831 -4.4885 17 1 -1.4514 2.4304 -5.8297 18 1 -1.6130 0.4839 -4.3925 19 1 -1.7810 2.7092 -3.4435 20 6 3.6928 5.4195 -3.7096 21 6 5.2219 5.3895 -3.7538 22 6 5.9694 6.5863 -3.1623 23 6 5.9215 6.3869 -4.6793 24 8 2.2906 2.1513 -1.0893 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2535 5.0870 1.8239 31 1 3.5269 4.0601 2.5254 32 1 3.8838 5.0779 1.1094 33 1 3.3191 2.9374 -4.4348 34 1 3.1103 2.2303 -2.8147 35 1 1.0340 0.1023 -4.9874 36 1 3.2978 5.3032 -4.7188 37 1 3.3600 6.3718 -3.2966 38 1 5.6763 4.4054 -3.6388 39 1 5.3718 7.3952 -2.7420 40 1 6.9157 6.3896 -2.6585 41 1 6.8365 6.0593 -5.1728 42 1 5.2926 7.0647 -5.2563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293005594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:34 Heat of formation + Delta-G solvation = 4.269282 kcal Electronic energy + Delta-G solvation = -24487.481405 eV Core-core repulsion = 21049.084663 eV Total energy + Delta-G solvation = -3438.396742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.78683 -39.10666 -36.96231 -35.24449 -34.24258 -33.79796 -32.51230 -30.35247 -28.25435 -27.45660 -25.89572 -24.23804 -23.01267 -22.12725 -21.37345 -20.80593 -20.29667 -19.09109 -16.93549 -16.55310 -16.09297 -15.90853 -15.47275 -14.71212 -14.53031 -14.47738 -14.16373 -13.76889 -13.45948 -13.10140 -12.88426 -12.62958 -12.41397 -12.23672 -12.05860 -11.86862 -11.54804 -11.43837 -11.31924 -11.25382 -10.99021 -10.94571 -10.79789 -10.40763 -10.34956 -10.17847 -10.06490 -9.76863 -9.67617 -9.37313 -8.55930 -8.28558 -7.77672 -6.18308 -4.23502 1.50065 2.92775 3.10503 3.19273 3.26745 3.31339 3.73506 3.80078 4.10780 4.30956 4.37722 5.01750 5.13106 5.15796 5.18970 5.21306 5.29127 5.40257 5.41182 5.56412 5.70683 5.80883 5.90581 5.96534 5.97609 6.04448 6.08960 6.10692 6.15179 6.16643 6.32263 6.33836 6.41720 6.43576 6.51849 6.70266 6.79504 7.26020 7.43959 7.74878 8.04062 8.07206 8.23885 8.71246 8.85066 9.41991 10.89037 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.007555 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.722524 B = 3705.347458 C = 5527.990740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 C 0.202 3.798 4 N -0.500 5.500 5 C 0.049 3.951 6 C -0.068 4.068 7 C -0.090 4.090 8 C 0.605 3.395 9 O -0.546 6.546 10 N -0.583 5.583 11 C 0.233 3.767 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.071 3.929 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.152 3.848 21 C -0.163 4.163 22 C -0.172 4.172 23 C -0.179 4.179 24 O -0.129 6.129 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 2.029 5.026 6.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 C -0.004 4.004 4 N -0.230 5.230 5 C -0.076 4.076 6 C -0.125 4.125 7 C -0.146 4.146 8 C 0.392 3.608 9 O -0.428 6.428 10 N -0.311 5.311 11 C 0.114 3.886 12 C -0.567 4.567 13 H 0.075 0.925 14 C -0.132 4.132 15 N -0.527 5.527 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.199 1.199 20 C 0.029 3.971 21 C -0.182 4.182 22 C -0.209 4.209 23 C -0.217 4.217 24 O -0.012 6.012 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.142 2.124 5.675 7.340 hybrid contribution -1.046 -0.079 -1.039 1.476 sum 3.096 2.045 4.636 5.938 Atomic orbital electron populations 1.21750 0.93293 1.02535 1.03098 1.20032 0.96861 0.84662 1.04838 1.26442 0.97368 0.96879 0.79685 1.70215 1.18673 1.03761 1.30400 1.21867 1.00120 0.94234 0.91347 1.20193 1.02207 0.93215 0.96926 1.22894 1.10408 0.86967 0.94353 1.16431 0.77588 0.84847 0.81919 1.90733 1.53285 1.24466 1.74337 1.48137 1.61149 1.16748 1.05071 1.19697 0.95922 0.78701 0.94297 1.21362 0.91876 1.02008 1.41408 0.92490 1.24822 0.98055 0.95208 0.95134 1.69924 1.35402 1.05659 1.41724 0.86645 0.85563 0.77448 0.78785 1.20494 1.20861 1.19881 1.20917 0.90231 0.90619 0.95363 1.22780 0.95562 0.95299 1.04576 1.22969 1.02026 1.00701 0.95234 1.22921 1.02451 1.03163 0.93155 1.85100 1.60866 1.20900 1.34381 0.91514 0.91293 0.92214 0.88376 0.88315 0.90801 0.91360 0.89341 0.94191 0.93306 0.92649 0.89586 0.90620 0.87901 0.88607 0.89454 0.89115 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.89 37.16 0.37 -1.75 16 2 C -0.03 -0.39 6.56 -27.88 -0.18 -0.57 16 3 C 0.20 3.91 7.57 -12.79 -0.10 3.81 16 4 N -0.50 -9.76 11.26 -7.07 -0.08 -9.84 16 5 C 0.05 0.98 7.16 -82.47 -0.59 0.39 16 6 C -0.07 -1.11 9.81 36.00 0.35 -0.76 16 7 C -0.09 -1.96 6.76 -36.84 -0.25 -2.21 16 8 C 0.60 13.30 7.54 -12.84 -0.10 13.20 16 9 O -0.55 -11.98 14.52 5.21 0.08 -11.90 16 10 N -0.58 -12.52 2.49 -176.59 -0.44 -12.96 16 11 C 0.23 5.61 4.75 -5.19 -0.02 5.58 16 12 C -0.53 -13.80 8.44 -34.44 -0.29 -14.09 16 13 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 15 N -0.89 -23.83 13.29 55.43 0.74 -23.10 16 16 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 C 0.15 2.76 5.64 -4.04 -0.02 2.74 16 21 C -0.16 -2.58 5.98 -90.62 -0.54 -3.12 16 22 C -0.17 -2.40 10.18 -26.69 -0.27 -2.67 16 23 C -0.18 -2.29 10.25 -26.69 -0.27 -2.57 16 24 O -0.13 -2.89 6.84 4.41 0.03 -2.86 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.47 6.64 -51.93 -0.34 1.13 16 33 H 0.04 1.00 8.02 -51.93 -0.42 0.58 16 34 H 0.05 1.26 5.43 -51.93 -0.28 0.97 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 37 H 0.08 1.36 7.25 -51.93 -0.38 0.99 16 38 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 39 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -29.15 354.33 -7.82 -36.98 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.45 Total: 3.15 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.02 Total: -0.27 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.22 Total: -45.89 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.11 Total: -14.76 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.15 -7.82 -36.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293005594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.246 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds