Wall clock time and date at job start Tue Mar 31 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47025 * 2 1 4 4 N 1.30621 * 125.42388 * 89.97176 * 3 2 1 5 5 C 1.33693 * 108.99237 * 179.75077 * 4 3 2 6 6 C 1.50697 * 126.27400 * 180.27299 * 5 4 3 7 7 C 1.36340 * 107.45590 * 0.43280 * 5 4 3 8 8 C 1.46726 * 126.64704 * 179.83871 * 7 5 4 9 9 O 1.21679 * 119.99781 * 353.08197 * 8 7 5 10 10 N 1.34769 * 120.00009 * 172.80360 * 8 7 5 11 11 C 1.46505 * 120.00274 * 4.23441 * 10 8 7 12 12 C 1.50698 * 109.46906 * 83.19292 * 11 10 8 13 13 H 1.08003 * 120.00186 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00005 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99958 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00238 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47066 * 89.99632 * 16 14 12 18 18 H 1.48501 * 109.47202 * 209.99896 * 16 14 12 19 19 H 1.48498 * 109.46840 * 329.99893 * 16 14 12 20 20 C 1.46497 * 120.00165 * 184.23473 * 10 8 7 21 21 C 1.52997 * 109.47401 * 85.15230 * 20 10 8 22 22 C 1.52999 * 117.50297 * 243.75174 * 21 20 10 23 23 C 1.52997 * 117.50199 * 175.08821 * 21 20 10 24 24 O 1.33671 * 125.42268 * 270.00031 * 3 2 1 25 25 H 1.09001 * 109.46799 * 60.00267 * 1 2 3 26 26 H 1.09001 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47180 * 299.99973 * 1 2 3 28 28 H 1.08998 * 109.47180 * 240.00027 * 2 1 3 29 29 H 1.09001 * 109.46799 * 119.99733 * 2 1 3 30 30 H 1.09006 * 109.47464 * 270.19316 * 6 5 4 31 31 H 1.09003 * 109.47312 * 30.18722 * 6 5 4 32 32 H 1.08997 * 109.47574 * 150.18942 * 6 5 4 33 33 H 1.09003 * 109.46976 * 203.19068 * 11 10 8 34 34 H 1.08997 * 109.47129 * 323.19053 * 11 10 8 35 35 H 0.97003 * 119.99681 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47550 * 205.15696 * 20 10 8 37 37 H 1.09005 * 109.47281 * 325.15825 * 20 10 8 38 38 H 1.09008 * 115.54873 * 29.42041 * 21 20 10 39 39 H 1.08997 * 117.49800 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.49847 * 145.01638 * 22 21 20 41 41 H 1.08997 * 117.50366 * 214.98206 * 23 21 20 42 42 H 1.08994 * 117.49965 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2842 2.1348 1.0644 5 6 2.7170 3.3419 0.6862 6 6 3.1234 4.4697 1.5993 7 6 2.7198 3.3668 -0.6769 8 6 3.1172 4.4913 -1.5315 9 8 3.3705 5.5729 -1.0349 10 7 3.2071 4.3248 -2.8658 11 6 2.8191 3.0490 -3.4726 12 6 1.3262 3.0232 -3.6764 13 1 0.7263 3.8719 -3.3828 14 6 0.7259 1.9155 -4.2366 15 7 1.4564 0.8817 -4.5936 16 14 -1.1248 1.8831 -4.4885 17 1 -1.4514 2.4304 -5.8297 18 1 -1.6130 0.4839 -4.3925 19 1 -1.7810 2.7092 -3.4435 20 6 3.6928 5.4195 -3.7096 21 6 5.2219 5.3895 -3.7538 22 6 5.9694 6.5863 -3.1623 23 6 5.9215 6.3869 -4.6793 24 8 2.2906 2.1513 -1.0893 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2535 5.0870 1.8239 31 1 3.5269 4.0601 2.5254 32 1 3.8838 5.0779 1.1094 33 1 3.3191 2.9374 -4.4348 34 1 3.1103 2.2303 -2.8147 35 1 1.0340 0.1023 -4.9874 36 1 3.2978 5.3032 -4.7188 37 1 3.3600 6.3718 -3.2966 38 1 5.6763 4.4054 -3.6388 39 1 5.3718 7.3952 -2.7420 40 1 6.9157 6.3896 -2.6585 41 1 6.8365 6.0593 -5.1728 42 1 5.2926 7.0647 -5.2563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293005594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:32 Heat of formation + Delta-G solvation = -12.811487 kcal Electronic energy + Delta-G solvation = -24488.222083 eV Core-core repulsion = 21049.084663 eV Total energy + Delta-G solvation = -3439.137419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -44.35782 -40.73932 -38.27553 -36.86968 -35.87772 -35.09483 -34.45924 -31.76064 -29.86245 -29.19266 -27.40692 -25.66560 -24.87815 -23.20613 -22.84817 -22.25081 -21.67989 -20.69058 -18.82525 -18.23880 -17.72392 -17.57948 -16.96621 -16.40247 -16.08325 -15.89691 -15.51386 -15.12676 -14.83268 -14.65324 -14.37697 -14.14565 -14.11095 -13.64281 -13.53629 -13.36266 -13.15477 -12.90984 -12.70752 -12.63785 -12.55556 -12.34166 -12.20118 -12.12618 -11.90347 -11.78216 -11.74508 -11.32855 -11.08711 -10.81941 -10.58360 -9.90375 -9.46526 -8.19898 -6.32113 -0.10211 1.34976 1.37279 1.39527 1.46547 1.59502 2.08753 2.19990 2.41280 2.90062 2.95551 3.10652 3.62235 3.75851 3.82449 3.99802 4.10617 4.17149 4.20985 4.23899 4.36084 4.58592 4.62149 4.66832 4.71870 4.74327 4.79764 4.82919 4.86468 4.91264 4.97429 5.01600 5.05364 5.23500 5.25675 5.27880 5.28291 5.40922 5.61560 5.75658 6.03715 6.33409 6.61132 6.76920 7.07643 7.36791 8.86735 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.007555 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.722524 B = 3705.347458 C = 5527.990740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C 0.202 3.798 4 N -0.504 5.504 5 C 0.057 3.943 6 C -0.065 4.065 7 C -0.131 4.131 8 C 0.600 3.400 9 O -0.552 6.552 10 N -0.587 5.587 11 C 0.253 3.747 12 C -0.538 4.538 13 H 0.039 0.961 14 C 0.036 3.964 15 N -0.909 5.909 16 Si 0.942 3.058 17 H -0.274 1.274 18 H -0.271 1.271 19 H -0.281 1.281 20 C 0.151 3.849 21 C -0.188 4.188 22 C -0.168 4.168 23 C -0.152 4.152 24 O -0.156 6.156 25 H 0.034 0.966 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.026 0.974 34 H 0.033 0.967 35 H 0.268 0.732 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 1.859 5.622 7.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C -0.003 4.003 4 N -0.235 5.235 5 C -0.068 4.068 6 C -0.121 4.121 7 C -0.187 4.187 8 C 0.388 3.612 9 O -0.435 6.435 10 N -0.315 5.315 11 C 0.132 3.868 12 C -0.576 4.576 13 H 0.058 0.942 14 C -0.165 4.165 15 N -0.548 5.548 16 Si 0.767 3.233 17 H -0.199 1.199 18 H -0.195 1.195 19 H -0.206 1.206 20 C 0.029 3.971 21 C -0.207 4.207 22 C -0.205 4.205 23 C -0.190 4.190 24 O -0.041 6.041 25 H 0.053 0.947 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.151 0.849 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.025 1.971 6.265 7.703 hybrid contribution -1.001 -0.058 -1.168 1.540 sum 3.024 1.913 5.097 6.228 Atomic orbital electron populations 1.21733 0.92468 1.04288 1.01638 1.20352 0.97406 0.82324 1.06379 1.27492 0.95762 0.98064 0.79002 1.70283 1.19290 1.03699 1.30205 1.22460 0.98195 0.94971 0.91157 1.20290 1.02521 0.92198 0.97136 1.23030 1.13058 0.87301 0.95286 1.16547 0.77524 0.85080 0.82038 1.90701 1.53831 1.24608 1.74370 1.48130 1.61361 1.16646 1.05398 1.19262 0.94743 0.79600 0.93159 1.21408 0.92734 1.01694 1.41768 0.94244 1.25407 1.01598 0.94807 0.94729 1.69994 1.36857 1.06028 1.41931 0.85817 0.81155 0.77852 0.78462 1.19913 1.19531 1.20613 1.21042 0.92035 0.89441 0.94598 1.22595 0.93933 0.95694 1.08495 1.23014 1.01877 0.99092 0.96496 1.23044 1.02443 1.00878 0.92592 1.85060 1.61678 1.21498 1.35886 0.94721 0.87948 0.91807 0.88539 0.84942 0.89692 0.88835 0.89852 0.95613 0.94938 0.92250 0.89816 0.90684 0.89370 0.88924 0.88384 0.87213 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.89 71.98 0.71 -3.15 16 2 C -0.03 -0.77 6.56 29.85 0.20 -0.57 16 3 C 0.20 7.79 7.57 88.29 0.67 8.45 16 4 N -0.50 -19.29 11.26 -291.05 -3.28 -22.57 16 5 C 0.06 2.26 7.16 41.83 0.30 2.56 16 6 C -0.06 -2.02 9.81 71.24 0.70 -1.32 16 7 C -0.13 -5.88 6.76 24.05 0.16 -5.72 16 8 C 0.60 27.15 7.54 86.46 0.65 27.80 16 9 O -0.55 -24.57 14.52 -4.28 -0.06 -24.63 16 10 N -0.59 -26.17 2.49 -830.84 -2.07 -28.23 16 11 C 0.25 12.65 4.75 85.63 0.41 13.06 16 12 C -0.54 -28.88 8.44 25.60 0.22 -28.66 16 13 H 0.04 2.22 7.81 -2.91 -0.02 2.19 16 14 C 0.04 1.89 5.46 84.65 0.46 2.35 16 15 N -0.91 -49.17 13.29 21.45 0.28 -48.89 16 16 Si 0.94 42.09 29.54 68.60 2.03 44.12 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 C 0.15 5.62 5.64 86.38 0.49 6.10 16 21 C -0.19 -5.96 5.98 -10.80 -0.06 -6.02 16 22 C -0.17 -4.48 10.18 30.62 0.31 -4.17 16 23 C -0.15 -3.61 10.25 30.62 0.31 -3.30 16 24 O -0.16 -7.20 6.84 -7.14 -0.05 -7.25 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 2.71 6.64 -2.39 -0.02 2.70 16 33 H 0.03 1.34 8.02 -2.39 -0.02 1.32 16 34 H 0.03 1.76 5.43 -2.39 -0.01 1.75 16 35 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.08 3.06 8.03 -2.39 -0.02 3.05 16 37 H 0.07 2.76 7.25 -2.38 -0.02 2.74 16 38 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 39 H 0.09 2.54 8.03 -2.39 -0.02 2.52 16 40 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -63.17 354.33 3.39 -59.78 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 1.01 Total: 20.27 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 5.52 Total: 7.41 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -5.06 Total: -99.69 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.11 Total: -31.88 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -63.17 3.39 -59.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293005594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.965 kcal (2) G-P(sol) polarization free energy of solvation -63.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds