Wall clock time and date at job start Tue Mar 31 2020 07:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47572 * 2 1 4 4 C 1.53004 * 109.47113 * 239.99935 * 2 1 3 5 5 C 1.52998 * 109.47135 * 120.00155 * 2 1 3 6 6 N 1.46501 * 109.47028 * 64.80969 * 5 2 1 7 7 C 1.46502 * 120.00067 * 87.01222 * 6 5 2 8 8 C 1.50693 * 109.47238 * 97.57635 * 7 6 5 9 9 H 1.08001 * 120.00117 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00237 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99950 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00385 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47012 * 89.99777 * 12 10 8 14 14 H 1.48498 * 109.47224 * 209.99951 * 12 10 8 15 15 H 1.48500 * 109.46736 * 329.99617 * 12 10 8 16 16 C 1.34777 * 119.99756 * 267.01218 * 6 5 2 17 17 O 1.21668 * 120.00370 * 358.55066 * 16 6 5 18 18 C 1.46854 * 119.99640 * 178.55433 * 16 6 5 19 19 C 1.36237 * 125.79627 * 190.29116 * 18 16 6 20 20 C 1.41574 * 106.98025 * 179.90952 * 19 18 16 21 21 C 1.46623 * 126.51577 * 180.13353 * 20 19 18 22 22 O 1.21320 * 120.00162 * 0.28942 * 21 20 19 23 23 C 1.38621 * 106.96754 * 0.35679 * 20 19 18 24 24 N 1.34112 * 108.34170 * 359.78205 * 23 20 19 25 25 H 0.96998 * 125.34152 * 180.02562 * 24 23 20 26 26 H 1.09004 * 109.47311 * 304.45517 * 1 2 3 27 27 H 1.09004 * 109.46955 * 64.44812 * 1 2 3 28 28 H 1.08993 * 109.47373 * 184.44902 * 1 2 3 29 29 H 1.08997 * 109.47133 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47166 * 300.00257 * 3 2 1 31 31 H 1.09001 * 109.46868 * 59.99854 * 3 2 1 32 32 H 1.08997 * 109.47062 * 300.00343 * 4 2 1 33 33 H 1.09003 * 109.46842 * 60.00223 * 4 2 1 34 34 H 1.09000 * 109.46935 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47134 * 304.81097 * 5 2 1 36 36 H 1.09001 * 109.47550 * 184.81059 * 5 2 1 37 37 H 1.09007 * 109.46629 * 217.57577 * 7 6 5 38 38 H 1.08996 * 109.46950 * 337.57406 * 7 6 5 39 39 H 0.97001 * 120.00614 * 180.02562 * 11 10 8 40 40 H 1.08001 * 126.51113 * 0.02562 * 19 18 16 41 41 H 1.07999 * 119.99378 * 180.28496 * 21 20 19 42 42 H 1.07997 * 125.82588 * 179.80126 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 7 1.6485 -2.1319 1.1926 7 6 2.5040 -3.1026 0.5056 8 6 3.3692 -3.8125 1.5147 9 1 3.2900 -3.5651 2.5630 10 6 4.2626 -4.7771 1.0997 11 7 4.3594 -5.0781 -0.1769 12 14 5.3355 -5.6567 2.3506 13 1 4.6333 -6.8707 2.8385 14 1 6.6182 -6.0492 1.7135 15 1 5.6081 -4.7492 3.4940 16 6 0.5012 -2.5365 1.7727 17 8 -0.1962 -1.7353 2.3660 18 6 0.0929 -3.9447 1.6887 19 6 -1.1208 -4.4455 2.0523 20 6 -1.0841 -5.8389 1.8046 21 6 -2.1694 -6.7960 2.0412 22 8 -3.2298 -6.4123 2.4884 23 6 0.1747 -6.1272 1.3007 24 7 0.8745 -4.9851 1.2344 25 1 1.7872 -4.9040 0.9163 26 1 -0.3634 0.5814 0.8474 27 1 -0.3633 0.4433 -0.9272 28 1 -0.3634 -1.0245 0.0797 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.6080 -0.2596 2.1371 36 1 3.1265 -0.6473 1.2934 37 1 1.8819 -3.8303 -0.0156 38 1 3.1367 -2.5836 -0.2144 39 1 4.9876 -5.7570 -0.4689 40 1 -1.9535 -3.8856 2.4517 41 1 -2.0247 -7.8426 1.8173 42 1 0.5308 -7.1047 1.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293052850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:59 Heat of formation + Delta-G solvation = -26.354800 kcal Electronic energy + Delta-G solvation = -24547.119014 eV Core-core repulsion = 21107.394313 eV Total energy + Delta-G solvation = -3439.724701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10154 -39.14186 -37.98551 -36.67078 -34.84996 -32.76218 -30.74675 -29.31304 -28.12685 -27.00860 -26.86395 -25.92600 -23.67463 -23.34256 -21.32660 -19.60929 -19.20463 -18.36371 -17.22414 -16.79093 -16.05028 -15.49211 -15.11428 -15.04592 -14.54261 -14.23917 -14.14963 -13.87639 -13.49897 -13.31624 -13.00857 -12.77414 -12.70510 -12.61486 -12.11131 -11.94622 -11.79300 -11.57799 -11.35855 -11.23577 -11.14472 -11.05628 -10.60438 -10.54399 -10.41152 -10.24361 -10.01303 -9.46281 -9.30008 -8.99839 -8.53319 -8.01144 -7.71925 -6.62505 -4.76870 1.82049 2.18878 2.97461 3.07620 3.12036 3.62831 3.68900 3.92536 3.97416 4.13911 4.67530 4.80960 5.10982 5.12272 5.25285 5.36721 5.47821 5.54641 5.79177 5.82937 5.86473 5.96082 6.07306 6.10833 6.15396 6.19469 6.28697 6.33605 6.37719 6.43951 6.48260 6.49165 6.67310 6.73823 6.78792 7.07054 7.21455 7.32975 7.43593 7.56068 7.92734 8.07287 8.14090 8.41577 8.85022 8.96496 10.38995 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.007910 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.785605 B = 3538.928787 C = 5776.855290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.140 4.140 5 C 0.130 3.870 6 N -0.592 5.592 7 C 0.214 3.786 8 C -0.563 4.563 9 H 0.071 0.929 10 C 0.066 3.934 11 N -0.881 5.881 12 Si 0.899 3.101 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.269 1.269 16 C 0.588 3.412 17 O -0.556 6.556 18 C -0.048 4.048 19 C -0.071 4.071 20 C -0.309 4.309 21 C 0.413 3.587 22 O -0.489 6.489 23 C 0.075 3.925 24 N -0.494 5.494 25 H 0.454 0.546 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.058 0.942 39 H 0.274 0.726 40 H 0.146 0.854 41 H 0.092 0.908 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 1.524 -2.440 3.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 C -0.194 4.194 4 C -0.198 4.198 5 C 0.007 3.993 6 N -0.322 5.322 7 C 0.093 3.907 8 C -0.602 4.602 9 H 0.089 0.911 10 C -0.140 4.140 11 N -0.517 5.517 12 Si 0.725 3.275 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.193 1.193 16 C 0.377 3.623 17 O -0.435 6.435 18 C -0.161 4.161 19 C -0.096 4.096 20 C -0.317 4.317 21 C 0.274 3.726 22 O -0.365 6.365 23 C -0.073 4.073 24 N -0.102 5.102 25 H 0.314 0.686 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.108 0.892 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.456 2.156 -2.121 3.896 hybrid contribution 1.431 -0.688 0.304 1.617 sum -1.025 1.468 -1.817 2.551 Atomic orbital electron populations 1.21795 0.94219 1.02281 1.00519 1.20968 0.96316 0.95156 0.96245 1.21789 1.00808 0.95312 1.01470 1.21976 1.00885 1.00883 0.96012 1.21406 0.99701 0.80932 0.97285 1.47974 1.21252 1.08858 1.54097 1.19903 0.89720 0.87788 0.93263 1.21728 1.22068 1.21299 0.95056 0.91118 1.25098 0.96340 0.96771 0.95830 1.69923 1.36269 1.31528 1.13955 0.86424 0.79919 0.79946 0.81175 1.19941 1.20518 1.19304 1.17086 0.80985 0.85619 0.78598 1.90737 1.54294 1.53856 1.44661 1.20118 0.93622 0.89154 1.13178 1.21045 0.95890 0.93061 0.99563 1.20642 0.97282 0.95829 1.17921 1.22984 0.84494 0.92787 0.72292 1.90486 1.27903 1.83069 1.35049 1.22659 0.91944 0.92027 1.00674 1.44272 1.17096 1.05548 1.43316 0.68571 0.92618 0.93795 0.92549 0.92677 0.92807 0.92748 0.91870 0.93531 0.92539 0.90436 0.90587 0.94897 0.92418 0.91587 0.83663 0.89163 0.80780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 7.55 37.16 0.28 -1.80 16 2 C -0.09 -1.30 0.85 -154.51 -0.13 -1.43 16 3 C -0.14 -1.70 8.47 37.16 0.31 -1.38 16 4 C -0.14 -2.15 7.08 37.16 0.26 -1.89 16 5 C 0.13 2.28 4.59 -4.04 -0.02 2.26 16 6 N -0.59 -11.80 1.99 -176.54 -0.35 -12.15 16 7 C 0.21 4.53 3.23 -5.20 -0.02 4.51 16 8 C -0.56 -12.91 7.26 -34.45 -0.25 -13.16 16 9 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 10 C 0.07 1.50 5.05 -17.82 -0.09 1.41 16 11 N -0.88 -20.65 13.29 55.43 0.74 -19.91 16 12 Si 0.90 18.37 29.54 -169.99 -5.02 13.35 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 C 0.59 12.51 6.09 -12.78 -0.08 12.43 16 17 O -0.56 -12.58 15.13 5.22 0.08 -12.50 16 18 C -0.05 -0.98 6.56 -82.40 -0.54 -1.52 16 19 C -0.07 -1.38 10.38 -39.03 -0.41 -1.78 16 20 C -0.31 -5.18 6.13 -105.10 -0.64 -5.82 16 21 C 0.41 6.08 11.68 34.11 0.40 6.48 16 22 O -0.49 -9.03 17.74 5.52 0.10 -8.93 16 23 C 0.07 1.19 11.94 -16.41 -0.20 1.00 16 24 N -0.49 -9.49 4.68 -9.24 -0.04 -9.54 16 25 H 0.45 9.31 3.19 -40.82 -0.13 9.18 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.03 5.96 -51.93 -0.31 0.72 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.09 6.01 -51.93 -0.31 0.78 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.86 7.77 -51.93 -0.40 0.46 16 35 H 0.08 1.40 7.31 -51.93 -0.38 1.02 16 36 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 37 H 0.03 0.73 5.20 -51.93 -0.27 0.46 16 38 H 0.06 1.26 6.02 -51.93 -0.31 0.94 16 39 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 40 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 41 H 0.09 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -26.92 339.23 -6.39 -33.31 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.89 Total: 11.95 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.11 Total: -0.69 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.34 Total: -41.61 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.18 Total: -21.42 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.92 -6.39 -33.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293052850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.955 kcal (2) G-P(sol) polarization free energy of solvation -26.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds