Wall clock time and date at job start Tue Mar 31 2020 07:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47572 * 2 1 4 4 C 1.53004 * 109.47113 * 239.99935 * 2 1 3 5 5 C 1.52998 * 109.47135 * 120.00155 * 2 1 3 6 6 N 1.46501 * 109.47028 * 64.80969 * 5 2 1 7 7 C 1.46502 * 120.00067 * 87.01222 * 6 5 2 8 8 C 1.50693 * 109.47238 * 97.57635 * 7 6 5 9 9 H 1.08001 * 120.00117 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00237 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99950 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00385 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47012 * 89.99777 * 12 10 8 14 14 H 1.48498 * 109.47224 * 209.99951 * 12 10 8 15 15 H 1.48500 * 109.46736 * 329.99617 * 12 10 8 16 16 C 1.34777 * 119.99756 * 267.01218 * 6 5 2 17 17 O 1.21668 * 120.00370 * 358.55066 * 16 6 5 18 18 C 1.46854 * 119.99640 * 178.55433 * 16 6 5 19 19 C 1.36237 * 125.79627 * 190.29116 * 18 16 6 20 20 C 1.41574 * 106.98025 * 179.90952 * 19 18 16 21 21 C 1.46623 * 126.51577 * 180.13353 * 20 19 18 22 22 O 1.21320 * 120.00162 * 0.28942 * 21 20 19 23 23 C 1.38621 * 106.96754 * 0.35679 * 20 19 18 24 24 N 1.34112 * 108.34170 * 359.78205 * 23 20 19 25 25 H 0.96998 * 125.34152 * 180.02562 * 24 23 20 26 26 H 1.09004 * 109.47311 * 304.45517 * 1 2 3 27 27 H 1.09004 * 109.46955 * 64.44812 * 1 2 3 28 28 H 1.08993 * 109.47373 * 184.44902 * 1 2 3 29 29 H 1.08997 * 109.47133 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47166 * 300.00257 * 3 2 1 31 31 H 1.09001 * 109.46868 * 59.99854 * 3 2 1 32 32 H 1.08997 * 109.47062 * 300.00343 * 4 2 1 33 33 H 1.09003 * 109.46842 * 60.00223 * 4 2 1 34 34 H 1.09000 * 109.46935 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47134 * 304.81097 * 5 2 1 36 36 H 1.09001 * 109.47550 * 184.81059 * 5 2 1 37 37 H 1.09007 * 109.46629 * 217.57577 * 7 6 5 38 38 H 1.08996 * 109.46950 * 337.57406 * 7 6 5 39 39 H 0.97001 * 120.00614 * 180.02562 * 11 10 8 40 40 H 1.08001 * 126.51113 * 0.02562 * 19 18 16 41 41 H 1.07999 * 119.99378 * 180.28496 * 21 20 19 42 42 H 1.07997 * 125.82588 * 179.80126 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 7 1.6485 -2.1319 1.1926 7 6 2.5040 -3.1026 0.5056 8 6 3.3692 -3.8125 1.5147 9 1 3.2900 -3.5651 2.5630 10 6 4.2626 -4.7771 1.0997 11 7 4.3594 -5.0781 -0.1769 12 14 5.3355 -5.6567 2.3506 13 1 4.6333 -6.8707 2.8385 14 1 6.6182 -6.0492 1.7135 15 1 5.6081 -4.7492 3.4940 16 6 0.5012 -2.5365 1.7727 17 8 -0.1962 -1.7353 2.3660 18 6 0.0929 -3.9447 1.6887 19 6 -1.1208 -4.4455 2.0523 20 6 -1.0841 -5.8389 1.8046 21 6 -2.1694 -6.7960 2.0412 22 8 -3.2298 -6.4123 2.4884 23 6 0.1747 -6.1272 1.3007 24 7 0.8745 -4.9851 1.2344 25 1 1.7872 -4.9040 0.9163 26 1 -0.3634 0.5814 0.8474 27 1 -0.3633 0.4433 -0.9272 28 1 -0.3634 -1.0245 0.0797 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.6080 -0.2596 2.1371 36 1 3.1265 -0.6473 1.2934 37 1 1.8819 -3.8303 -0.0156 38 1 3.1367 -2.5836 -0.2144 39 1 4.9876 -5.7570 -0.4689 40 1 -1.9535 -3.8856 2.4517 41 1 -2.0247 -7.8426 1.8173 42 1 0.5308 -7.1047 1.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293052850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:58 Heat of formation + Delta-G solvation = -40.395719 kcal Electronic energy + Delta-G solvation = -24547.727874 eV Core-core repulsion = 21107.394313 eV Total energy + Delta-G solvation = -3440.333561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.56512 -40.62747 -39.29140 -38.15368 -36.43166 -34.45893 -32.17955 -30.76185 -29.76623 -28.19260 -28.16030 -27.37539 -25.19019 -24.81619 -22.79159 -21.09785 -20.53244 -19.68461 -18.92400 -18.38837 -17.51021 -16.99039 -16.69634 -16.50673 -15.98745 -15.59638 -15.47519 -15.19658 -14.86176 -14.68794 -14.49807 -14.37113 -14.23671 -14.11632 -13.46314 -13.34371 -13.07705 -13.01897 -12.88297 -12.63241 -12.56903 -12.51941 -12.18295 -12.01936 -11.79680 -11.59279 -11.54923 -11.04426 -10.74418 -10.61541 -10.01730 -9.58440 -9.17804 -8.37889 -6.58324 0.58291 0.65421 1.35538 1.42588 1.49558 2.13849 2.25582 2.31752 2.50742 2.61271 2.90446 3.59874 3.82468 3.85870 3.97972 4.01555 4.20619 4.24441 4.50217 4.54623 4.63298 4.65535 4.72747 4.79444 4.87422 4.89658 4.91116 4.99230 5.04126 5.06317 5.18392 5.19668 5.28323 5.44533 5.46489 5.51741 5.62825 5.73321 5.81672 5.93880 6.38945 6.61335 6.65633 6.81512 7.13204 7.26625 8.62854 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.007910 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.785605 B = 3538.928787 C = 5776.855290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.135 4.135 5 C 0.125 3.875 6 N -0.590 5.590 7 C 0.230 3.770 8 C -0.570 4.570 9 H 0.050 0.950 10 C 0.042 3.958 11 N -0.896 5.896 12 Si 0.947 3.053 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.281 1.281 16 C 0.580 3.420 17 O -0.581 6.581 18 C -0.079 4.079 19 C -0.085 4.085 20 C -0.316 4.316 21 C 0.424 3.576 22 O -0.531 6.531 23 C 0.097 3.903 24 N -0.509 5.509 25 H 0.449 0.551 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.025 0.975 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.050 0.950 39 H 0.279 0.721 40 H 0.132 0.868 41 H 0.159 0.841 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 0.155 -3.240 3.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.082 4.082 3 C -0.187 4.187 4 C -0.192 4.192 5 C 0.002 3.998 6 N -0.319 5.319 7 C 0.108 3.892 8 C -0.609 4.609 9 H 0.068 0.932 10 C -0.163 4.163 11 N -0.533 5.533 12 Si 0.772 3.228 13 H -0.189 1.189 14 H -0.201 1.201 15 H -0.206 1.206 16 C 0.370 3.630 17 O -0.464 6.464 18 C -0.191 4.191 19 C -0.111 4.111 20 C -0.323 4.323 21 C 0.288 3.712 22 O -0.409 6.409 23 C -0.050 4.050 24 N -0.116 5.116 25 H 0.308 0.692 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.175 0.825 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.828 0.786 -2.934 3.545 hybrid contribution 1.224 -0.291 0.546 1.371 sum -0.604 0.495 -2.388 2.513 Atomic orbital electron populations 1.21719 0.94768 1.00362 1.01287 1.20944 0.95740 0.96730 0.94818 1.21743 1.01319 0.93098 1.02587 1.21905 1.00729 0.99659 0.96888 1.21584 0.99789 0.80035 0.98388 1.47991 1.20735 1.09650 1.53492 1.19662 0.89241 0.87616 0.92644 1.21671 1.22884 1.22064 0.94239 0.93168 1.25519 0.96843 0.96952 0.96953 1.69962 1.36659 1.31867 1.14767 0.85706 0.78897 0.79109 0.79129 1.18912 1.20067 1.20628 1.17343 0.81069 0.86179 0.78387 1.90696 1.55042 1.54684 1.45959 1.20087 0.94491 0.89206 1.15268 1.21166 0.95262 0.94930 0.99724 1.21048 0.98665 0.94948 1.17657 1.23761 0.82583 0.94601 0.70270 1.90491 1.29397 1.83989 1.36984 1.23462 0.90904 0.92727 0.97883 1.44232 1.16985 1.06291 1.44106 0.69248 0.93280 0.91680 0.95579 0.91849 0.91017 0.92332 0.94346 0.91425 0.92624 0.91417 0.90396 0.95392 0.93200 0.91157 0.85045 0.82528 0.75891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 7.55 71.98 0.54 -3.43 16 2 C -0.08 -2.44 0.85 -52.18 -0.04 -2.49 16 3 C -0.13 -3.02 8.47 71.98 0.61 -2.41 16 4 C -0.13 -4.05 7.08 71.98 0.51 -3.54 16 5 C 0.12 4.49 4.59 86.38 0.40 4.88 16 6 N -0.59 -24.37 1.99 -830.69 -1.66 -26.03 16 7 C 0.23 9.91 3.23 85.63 0.28 10.18 16 8 C -0.57 -26.35 7.26 25.60 0.19 -26.16 16 9 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 10 C 0.04 1.89 5.05 84.65 0.43 2.32 16 11 N -0.90 -41.11 13.29 21.45 0.28 -40.83 16 12 Si 0.95 36.73 29.54 68.60 2.03 38.76 16 13 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 14 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 15 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 16 C 0.58 25.83 6.09 86.50 0.53 26.36 16 17 O -0.58 -27.78 15.13 -4.25 -0.06 -27.85 16 18 C -0.08 -3.30 6.56 39.99 0.26 -3.04 16 19 C -0.09 -3.39 10.38 22.63 0.23 -3.15 16 20 C -0.32 -10.08 6.13 -20.18 -0.12 -10.20 16 21 C 0.42 11.22 11.68 70.01 0.82 12.04 16 22 O -0.53 -18.90 17.74 -3.15 -0.06 -18.95 16 23 C 0.10 2.85 11.94 84.44 1.01 3.86 16 24 N -0.51 -19.33 4.68 -183.14 -0.86 -20.19 16 25 H 0.45 18.28 3.19 -92.71 -0.30 17.99 16 26 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.03 0.97 5.96 -2.39 -0.01 0.96 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.33 6.01 -2.39 -0.01 1.32 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.66 7.77 -2.39 -0.02 1.65 16 35 H 0.07 2.55 7.31 -2.39 -0.02 2.53 16 36 H 0.08 2.73 8.09 -2.39 -0.02 2.71 16 37 H 0.03 1.27 5.20 -2.38 -0.01 1.26 16 38 H 0.05 2.21 6.02 -2.39 -0.01 2.20 16 39 H 0.28 12.08 8.31 -92.71 -0.77 11.31 16 40 H 0.13 5.46 8.06 -2.91 -0.02 5.44 16 41 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.22 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -60.24 339.23 6.04 -54.20 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.73 Total: 35.67 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.63 Total: 5.22 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -2.23 Total: -87.05 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -0.12 Total: -46.80 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -60.24 6.04 -54.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293052850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.804 kcal (2) G-P(sol) polarization free energy of solvation -60.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds