Wall clock time and date at job start Tue Mar 31 2020 06:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 C 1.50702 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.35270 * 126.65831 * 89.99883 * 4 3 2 6 6 C 1.42331 * 103.92801 * 180.02562 * 5 4 3 7 7 C 1.48170 * 126.94812 * 180.02562 * 6 5 4 8 8 O 1.21539 * 120.00192 * 353.44954 * 7 6 5 9 9 N 1.34784 * 119.99736 * 173.44780 * 7 6 5 10 10 C 1.36779 * 119.99962 * 3.78072 * 9 7 6 11 11 H 1.07998 * 120.00106 * 118.33702 * 10 9 7 12 12 C 1.39117 * 120.00199 * 298.33146 * 10 9 7 13 13 N 1.31313 * 120.00082 * 172.80839 * 12 10 9 14 14 Si 1.86801 * 119.99757 * 352.81335 * 12 10 9 15 15 H 1.48502 * 109.47166 * 94.88228 * 14 12 10 16 16 H 1.48500 * 109.46998 * 214.88402 * 14 12 10 17 17 H 1.48497 * 109.47183 * 334.88167 * 14 12 10 18 18 C 1.46494 * 119.99733 * 183.77994 * 9 7 6 19 19 C 1.54966 * 110.92528 * 122.48560 * 18 9 7 20 20 C 1.54256 * 104.16233 * 156.29435 * 19 18 9 21 21 C 1.53880 * 106.64175 * 336.44589 * 20 19 18 22 22 C 1.54270 * 106.59447 * 359.97438 * 21 20 19 23 23 N 1.31073 * 106.10210 * 0.25937 * 6 5 4 24 24 O 1.20904 * 111.41446 * 359.53627 * 23 6 5 25 25 H 1.09009 * 109.46639 * 299.99832 * 1 2 3 26 26 H 1.08993 * 109.47531 * 59.99188 * 1 2 3 27 27 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47010 * 240.00391 * 2 1 3 29 29 H 1.08997 * 109.47614 * 120.00059 * 2 1 3 30 30 H 1.08997 * 109.46840 * 60.00286 * 3 2 1 31 31 H 1.09002 * 109.47152 * 300.00107 * 3 2 1 32 32 H 1.08005 * 128.03336 * 359.97438 * 5 4 3 33 33 H 0.97000 * 119.99781 * 179.97438 * 13 12 10 34 34 H 1.09004 * 110.67684 * 359.17887 * 18 9 7 35 35 H 1.09001 * 110.47507 * 37.64085 * 19 18 9 36 36 H 1.08997 * 110.52744 * 274.97515 * 19 18 9 37 37 H 1.08998 * 110.03782 * 217.13447 * 20 19 18 38 38 H 1.09001 * 110.03598 * 95.75499 * 20 19 18 39 39 H 1.08999 * 110.03226 * 119.26466 * 21 20 19 40 40 H 1.09003 * 110.02928 * 240.64307 * 21 20 19 41 41 H 1.09003 * 110.48160 * 142.29070 * 22 21 20 42 42 H 1.08996 * 110.48276 * 264.79795 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3542 1.4427 -1.0861 6 6 5.6672 1.4420 -0.5367 7 6 6.9458 1.4424 -1.2853 8 8 6.9420 1.3234 -2.4948 9 7 8.1133 1.5749 -0.6249 10 6 8.1234 1.6312 0.7417 11 1 8.6436 0.8741 1.3096 12 6 7.4635 2.6639 1.4003 13 7 7.3520 2.6428 2.7085 14 14 6.7361 4.0802 0.4235 15 1 5.3015 3.8091 0.1520 16 1 6.8633 5.3369 1.2044 17 1 7.4653 4.2207 -0.8625 18 6 9.3713 1.6586 -1.3707 19 6 10.1287 2.9678 -1.0335 20 6 11.6013 2.6474 -1.3627 21 6 11.7484 1.1179 -1.2812 22 6 10.3599 0.5611 -0.9044 23 7 5.5164 1.4359 0.7653 24 8 4.3476 1.4419 1.0744 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 4.0686 1.4424 -2.1277 33 1 6.8922 3.3630 3.1677 34 1 9.1889 1.5839 -2.4428 35 1 10.0183 3.2107 0.0234 36 1 9.7688 3.7883 -1.6542 37 1 12.2588 3.1250 -0.6363 38 1 11.8429 2.9927 -2.3680 39 1 12.0605 0.7208 -2.2471 40 1 12.4779 0.8532 -0.5157 41 1 10.1681 -0.3738 -1.4310 42 1 10.2879 0.4128 0.1730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295011084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:34 Heat of formation + Delta-G solvation = 29.101866 kcal Electronic energy + Delta-G solvation = -24535.714025 eV Core-core repulsion = 21098.394105 eV Total energy + Delta-G solvation = -3437.319920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.22626 -39.17208 -36.89436 -35.53391 -34.35732 -32.93515 -31.78416 -31.07484 -28.11045 -27.43499 -26.72829 -24.78953 -23.62526 -22.13462 -21.44589 -19.85361 -19.64258 -19.30709 -17.29289 -16.86900 -16.40033 -15.91895 -15.37893 -15.14331 -14.86260 -14.16857 -13.89661 -13.67867 -13.62079 -13.28098 -13.02761 -12.89611 -12.59648 -12.31002 -12.02138 -11.63504 -11.40472 -11.36256 -11.27965 -11.07603 -10.81259 -10.80041 -10.67431 -10.50199 -10.34827 -10.08842 -9.90470 -9.73883 -9.37350 -9.18001 -8.75762 -8.55261 -7.48485 -6.33741 -4.23227 2.05846 2.39537 3.10106 3.22460 3.33093 3.66122 4.10688 4.16993 4.22471 4.83309 4.96850 4.99025 5.02010 5.11803 5.24779 5.26971 5.33843 5.42143 5.59500 5.65840 5.71849 5.79047 5.89777 5.95952 6.02584 6.03707 6.12656 6.16655 6.19568 6.21312 6.24038 6.31191 6.39943 6.41102 6.54162 6.59952 6.85221 6.92093 7.07294 7.76361 7.81558 8.48725 8.88348 9.09209 9.26996 9.64262 10.73988 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.005263 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.456420 B = 5318.466093 C = 5813.766090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.033 4.033 4 C -0.067 4.067 5 C -0.189 4.189 6 C -0.029 4.029 7 C 0.561 3.439 8 O -0.584 6.584 9 N -0.444 5.444 10 C -0.352 4.352 11 H 0.100 0.900 12 C 0.117 3.883 13 N -0.847 5.847 14 Si 0.852 3.148 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.260 1.260 18 C 0.132 3.868 19 C -0.130 4.130 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.126 4.126 23 N -0.248 5.248 24 O 0.111 5.889 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.167 0.833 33 H 0.273 0.727 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 -1.581 -4.355 7.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.071 4.071 4 C -0.130 4.130 5 C -0.211 4.211 6 C -0.188 4.188 7 C 0.349 3.651 8 O -0.467 6.467 9 N -0.164 5.164 10 C -0.479 4.479 11 H 0.117 0.883 12 C -0.094 4.094 13 N -0.481 5.481 14 Si 0.678 3.322 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.184 1.184 18 C 0.029 3.971 19 C -0.169 4.169 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.165 4.165 23 N 0.054 4.946 24 O 0.033 5.967 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.185 0.815 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.051 -1.570 -3.774 6.498 hybrid contribution -0.755 0.965 -1.052 1.615 sum -5.807 -0.604 -4.826 7.575 Atomic orbital electron populations 1.21764 0.95343 1.01814 1.01887 1.21555 0.95764 0.95595 1.03168 1.20079 0.84554 0.98366 1.04085 1.24276 0.95766 1.06164 0.86813 1.22274 0.90662 1.07587 1.00561 1.23330 0.96135 1.09060 0.90261 1.17639 0.82678 0.78888 0.85907 1.90611 1.87181 1.55079 1.13796 1.43376 1.02808 1.63164 1.07008 1.18714 1.39130 1.11922 0.78166 0.88293 1.25352 0.93403 0.95860 0.94804 1.69538 1.38904 1.32274 1.07355 0.87325 0.80431 0.83041 0.81394 1.20230 1.21169 1.18415 1.22087 0.84506 0.94341 0.96182 1.22645 0.93658 0.97333 1.03224 1.22038 0.97048 0.96009 1.00582 1.22037 0.97479 0.95572 1.00565 1.22575 0.93515 0.97597 1.02779 1.75260 0.93397 1.11051 1.14855 1.84990 1.12466 1.65479 1.33742 0.92532 0.92653 0.92539 0.91407 0.91231 0.89748 0.89225 0.81532 0.91653 0.89519 0.89574 0.92769 0.92156 0.92562 0.92515 0.92169 0.92529 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 3 C -0.03 -0.40 5.78 -27.88 -0.16 -0.56 16 4 C -0.07 -1.20 6.73 -35.36 -0.24 -1.44 16 5 C -0.19 -3.78 10.84 -39.07 -0.42 -4.21 16 6 C -0.03 -0.71 4.34 -82.54 -0.36 -1.07 16 7 C 0.56 14.50 6.24 -12.18 -0.08 14.43 16 8 O -0.58 -15.51 16.34 5.33 0.09 -15.42 16 9 N -0.44 -11.12 1.88 -106.53 -0.20 -11.32 16 10 C -0.35 -9.37 6.86 -15.02 -0.10 -9.47 16 11 H 0.10 2.82 7.19 -52.49 -0.38 2.45 16 12 C 0.12 3.17 3.29 -17.45 -0.06 3.11 16 13 N -0.85 -23.75 13.95 55.50 0.77 -22.97 16 14 Si 0.85 21.77 24.14 -169.99 -4.10 17.67 16 15 H -0.28 -7.05 6.21 56.52 0.35 -6.70 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.26 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.13 2.87 3.29 -65.90 -0.22 2.65 16 19 C -0.13 -2.59 6.39 -25.04 -0.16 -2.75 16 20 C -0.12 -1.87 6.80 -25.62 -0.17 -2.05 16 21 C -0.12 -1.82 6.80 -25.61 -0.17 -1.99 16 22 C -0.13 -2.37 6.36 -25.07 -0.16 -2.53 16 23 N -0.25 -6.14 6.58 33.29 0.22 -5.92 16 24 O 0.11 2.40 11.18 17.19 0.19 2.59 16 25 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.17 2.93 8.06 -52.48 -0.42 2.51 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.09 1.92 7.00 -51.93 -0.36 1.55 16 35 H 0.09 1.89 7.23 -51.93 -0.38 1.52 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.68 6.66 -51.93 -0.35 1.33 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -30.89 334.33 -6.65 -37.54 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.57 Total: 1.04 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.09 Total: -8.24 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.79 Total: -40.22 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.28 Total: -12.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.10 Total: 17.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.89 -6.65 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295011084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.642 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds