Wall clock time and date at job start Tue Mar 31 2020 06:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 C 1.50702 * 109.47312 * 180.02562 * 3 2 1 5 5 C 1.35270 * 126.65831 * 89.99883 * 4 3 2 6 6 C 1.42331 * 103.92801 * 180.02562 * 5 4 3 7 7 C 1.48170 * 126.94812 * 180.02562 * 6 5 4 8 8 O 1.21539 * 120.00192 * 353.44954 * 7 6 5 9 9 N 1.34784 * 119.99736 * 173.44780 * 7 6 5 10 10 C 1.36779 * 119.99962 * 3.78072 * 9 7 6 11 11 H 1.07998 * 120.00106 * 118.33702 * 10 9 7 12 12 C 1.39117 * 120.00199 * 298.33146 * 10 9 7 13 13 N 1.31313 * 120.00082 * 172.80839 * 12 10 9 14 14 Si 1.86801 * 119.99757 * 352.81335 * 12 10 9 15 15 H 1.48502 * 109.47166 * 94.88228 * 14 12 10 16 16 H 1.48500 * 109.46998 * 214.88402 * 14 12 10 17 17 H 1.48497 * 109.47183 * 334.88167 * 14 12 10 18 18 C 1.46494 * 119.99733 * 183.77994 * 9 7 6 19 19 C 1.54966 * 110.92528 * 122.48560 * 18 9 7 20 20 C 1.54256 * 104.16233 * 156.29435 * 19 18 9 21 21 C 1.53880 * 106.64175 * 336.44589 * 20 19 18 22 22 C 1.54270 * 106.59447 * 359.97438 * 21 20 19 23 23 N 1.31073 * 106.10210 * 0.25937 * 6 5 4 24 24 O 1.20904 * 111.41446 * 359.53627 * 23 6 5 25 25 H 1.09009 * 109.46639 * 299.99832 * 1 2 3 26 26 H 1.08993 * 109.47531 * 59.99188 * 1 2 3 27 27 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47010 * 240.00391 * 2 1 3 29 29 H 1.08997 * 109.47614 * 120.00059 * 2 1 3 30 30 H 1.08997 * 109.46840 * 60.00286 * 3 2 1 31 31 H 1.09002 * 109.47152 * 300.00107 * 3 2 1 32 32 H 1.08005 * 128.03336 * 359.97438 * 5 4 3 33 33 H 0.97000 * 119.99781 * 179.97438 * 13 12 10 34 34 H 1.09004 * 110.67684 * 359.17887 * 18 9 7 35 35 H 1.09001 * 110.47507 * 37.64085 * 19 18 9 36 36 H 1.08997 * 110.52744 * 274.97515 * 19 18 9 37 37 H 1.08998 * 110.03782 * 217.13447 * 20 19 18 38 38 H 1.09001 * 110.03598 * 95.75499 * 20 19 18 39 39 H 1.08999 * 110.03226 * 119.26466 * 21 20 19 40 40 H 1.09003 * 110.02928 * 240.64307 * 21 20 19 41 41 H 1.09003 * 110.48160 * 142.29070 * 22 21 20 42 42 H 1.08996 * 110.48276 * 264.79795 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3542 1.4427 -1.0861 6 6 5.6672 1.4420 -0.5367 7 6 6.9458 1.4424 -1.2853 8 8 6.9420 1.3234 -2.4948 9 7 8.1133 1.5749 -0.6249 10 6 8.1234 1.6312 0.7417 11 1 8.6436 0.8741 1.3096 12 6 7.4635 2.6639 1.4003 13 7 7.3520 2.6428 2.7085 14 14 6.7361 4.0802 0.4235 15 1 5.3015 3.8091 0.1520 16 1 6.8633 5.3369 1.2044 17 1 7.4653 4.2207 -0.8625 18 6 9.3713 1.6586 -1.3707 19 6 10.1287 2.9678 -1.0335 20 6 11.6013 2.6474 -1.3627 21 6 11.7484 1.1179 -1.2812 22 6 10.3599 0.5611 -0.9044 23 7 5.5164 1.4359 0.7653 24 8 4.3476 1.4419 1.0744 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 4.0686 1.4424 -2.1277 33 1 6.8922 3.3630 3.1677 34 1 9.1889 1.5839 -2.4428 35 1 10.0183 3.2107 0.0234 36 1 9.7688 3.7883 -1.6542 37 1 12.2588 3.1250 -0.6363 38 1 11.8429 2.9927 -2.3680 39 1 12.0605 0.7208 -2.2471 40 1 12.4779 0.8532 -0.5157 41 1 10.1681 -0.3738 -1.4310 42 1 10.2879 0.4128 0.1730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295011084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:30 Heat of formation + Delta-G solvation = 11.432007 kcal Electronic energy + Delta-G solvation = -24536.480247 eV Core-core repulsion = 21098.394105 eV Total energy + Delta-G solvation = -3438.086143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -45.96110 -41.05464 -38.56884 -36.60643 -36.24117 -34.60028 -33.82448 -32.44285 -29.59285 -29.02759 -27.84629 -26.83581 -25.37159 -23.58047 -22.58370 -21.47644 -21.25035 -20.99464 -19.08061 -18.51898 -18.24027 -17.65227 -17.30314 -16.35045 -16.05796 -15.99554 -15.86004 -15.38753 -14.97281 -14.81637 -14.50191 -14.19856 -14.12650 -13.80535 -13.35932 -13.24435 -13.05483 -13.00809 -12.52618 -12.48808 -12.19727 -12.15151 -12.09861 -12.01036 -11.90971 -11.53215 -11.50107 -11.21185 -11.15381 -11.10828 -10.73794 -10.22152 -9.46443 -8.46070 -6.35965 0.32756 0.76715 1.05266 1.13594 1.24670 2.07525 2.18323 2.25277 2.41282 2.94638 3.30024 3.62554 3.78729 3.81862 4.02027 4.07038 4.12505 4.18891 4.31088 4.36157 4.51985 4.58441 4.60403 4.69696 4.71079 4.79073 4.83409 4.86360 4.91215 4.99623 5.04005 5.11151 5.19408 5.28601 5.32211 5.33006 5.38979 5.49044 5.52801 5.73466 5.83678 6.31148 6.90753 7.16250 7.40128 7.61720 8.64824 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.005263 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.456420 B = 5318.466093 C = 5813.766090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.032 4.032 4 C -0.041 4.041 5 C -0.202 4.202 6 C -0.061 4.061 7 C 0.548 3.452 8 O -0.600 6.600 9 N -0.450 5.450 10 C -0.342 4.342 11 H 0.072 0.928 12 C 0.100 3.900 13 N -0.876 5.876 14 Si 0.890 3.110 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.271 1.271 18 C 0.118 3.882 19 C -0.129 4.129 20 C -0.111 4.111 21 C -0.109 4.109 22 C -0.122 4.122 23 N -0.286 5.286 24 O 0.108 5.892 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.189 0.811 33 H 0.276 0.724 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 -1.255 -5.431 8.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.070 4.070 4 C -0.104 4.104 5 C -0.225 4.225 6 C -0.219 4.219 7 C 0.337 3.663 8 O -0.484 6.484 9 N -0.169 5.169 10 C -0.470 4.470 11 H 0.090 0.910 12 C -0.108 4.108 13 N -0.511 5.511 14 Si 0.716 3.284 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.196 1.196 18 C 0.015 3.985 19 C -0.168 4.168 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.161 4.161 23 N 0.017 4.983 24 O 0.029 5.971 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.207 0.793 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.911 -1.245 -4.845 7.744 hybrid contribution -0.586 0.776 -0.739 1.222 sum -6.497 -0.468 -5.584 8.580 Atomic orbital electron populations 1.21728 0.93067 1.02621 1.02866 1.21539 0.97620 0.94208 1.02495 1.20457 0.80204 0.99967 1.06333 1.25234 0.97779 1.02500 0.84889 1.22595 0.89142 1.08470 1.02249 1.23498 0.97013 1.10627 0.90743 1.18005 0.83548 0.78671 0.86062 1.90569 1.87635 1.55985 1.14235 1.43545 1.03936 1.62864 1.06605 1.18357 1.38629 1.11138 0.78835 0.91039 1.25565 0.93331 0.96908 0.95028 1.69589 1.40202 1.33107 1.08204 0.86732 0.79870 0.81670 0.80097 1.20106 1.20559 1.19592 1.22388 0.83850 0.96689 0.95571 1.22606 0.96624 0.96191 1.01336 1.22034 0.93916 0.96459 1.02432 1.22028 0.95254 0.94998 1.02452 1.22523 0.95183 0.97146 1.01198 1.75234 0.95010 1.12741 1.15350 1.84915 1.12118 1.65045 1.34983 0.91775 0.91463 0.91903 0.91810 0.92364 0.87965 0.86456 0.79340 0.91399 0.90041 0.92232 0.93295 0.90576 0.90183 0.90013 0.90443 0.92115 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.12 -2.28 5.92 30.59 0.18 -2.10 16 3 C -0.03 -0.67 5.78 29.85 0.17 -0.50 16 4 C -0.04 -1.41 6.73 25.00 0.17 -1.24 16 5 C -0.20 -7.93 10.84 22.60 0.25 -7.68 16 6 C -0.06 -3.02 4.34 42.92 0.19 -2.84 16 7 C 0.55 28.97 6.24 86.88 0.54 29.52 16 8 O -0.60 -32.33 16.34 -3.84 -0.06 -32.39 16 9 N -0.45 -23.20 1.88 -609.24 -1.15 -24.35 16 10 C -0.34 -18.89 6.86 84.13 0.58 -18.31 16 11 H 0.07 4.31 7.19 -2.91 -0.02 4.29 16 12 C 0.10 5.58 3.29 84.98 0.28 5.86 16 13 N -0.88 -50.26 13.95 21.69 0.30 -49.95 16 14 Si 0.89 45.56 24.14 68.60 1.66 47.21 16 15 H -0.28 -13.90 6.21 99.48 0.62 -13.28 16 16 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 17 H -0.27 -14.21 7.11 99.48 0.71 -13.51 16 18 C 0.12 5.17 3.29 46.31 0.15 5.32 16 19 C -0.13 -5.13 6.39 31.69 0.20 -4.93 16 20 C -0.11 -3.23 6.80 31.32 0.21 -3.02 16 21 C -0.11 -3.09 6.80 31.32 0.21 -2.88 16 22 C -0.12 -4.58 6.36 31.67 0.20 -4.38 16 23 N -0.29 -14.37 6.58 -49.48 -0.33 -14.70 16 24 O 0.11 4.64 11.18 71.68 0.80 5.44 16 25 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.19 6.34 8.06 -2.91 -0.02 6.32 16 33 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.08 3.64 7.00 -2.38 -0.02 3.62 16 35 H 0.06 2.67 7.23 -2.39 -0.02 2.65 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.06 2.47 6.66 -2.39 -0.02 2.46 16 Total: -1.00 -69.30 334.33 6.19 -63.11 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.91 Total: 14.04 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 4.05 Total: -8.41 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -1.17 Total: -89.00 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: 0.74 Total: -26.96 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.66 Total: 47.21 kcal Total: -69.30 6.19 -63.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295011084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.545 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds