Wall clock time and date at job start Tue Mar 31 2020 07:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35892 * 117.00308 * 2 1 4 4 C 1.38817 * 120.01687 * 359.72871 * 3 2 1 5 5 C 1.38169 * 120.07929 * 179.69292 * 4 3 2 6 6 C 1.38167 * 120.12524 * 0.60432 * 5 4 3 7 7 C 1.38883 * 120.04089 * 359.67738 * 6 5 4 8 8 N 1.39938 * 120.04169 * 180.02562 * 7 6 5 9 9 C 1.34773 * 119.99865 * 213.52903 * 8 7 6 10 10 O 1.21591 * 119.99964 * 5.04273 * 9 8 7 11 11 N 1.34777 * 120.00204 * 185.05064 * 9 8 7 12 12 C 1.46505 * 120.00126 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46697 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47310 * 299.99471 * 13 12 11 15 15 C 1.52999 * 109.47067 * 60.00138 * 13 12 11 16 16 C 1.50707 * 109.46537 * 179.97438 * 13 12 11 17 17 H 1.07995 * 120.00109 * 355.76013 * 16 13 12 18 18 C 1.37877 * 119.99730 * 175.75879 * 16 13 12 19 19 N 1.31513 * 120.00198 * 196.95722 * 18 16 13 20 20 Si 1.86802 * 119.99791 * 16.96213 * 18 16 13 21 21 H 1.48499 * 109.47724 * 89.06333 * 20 18 16 22 22 H 1.48504 * 109.47042 * 209.06281 * 20 18 16 23 23 H 1.48498 * 109.47311 * 329.05690 * 20 18 16 24 24 C 1.38580 * 120.02359 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46653 * 299.99637 * 1 2 3 27 27 H 1.08999 * 109.47546 * 59.99780 * 1 2 3 28 28 H 1.07998 * 119.95861 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.93609 * 180.27245 * 5 4 3 30 30 H 1.08007 * 119.97926 * 179.69291 * 6 5 4 31 31 H 0.96997 * 120.00109 * 33.52035 * 8 7 6 32 32 H 0.97000 * 119.99967 * 359.97438 * 11 9 8 33 33 H 1.08995 * 109.46599 * 299.99602 * 12 11 9 34 34 H 1.08998 * 109.47078 * 59.99724 * 12 11 9 35 35 H 1.09001 * 109.46934 * 66.83462 * 14 13 12 36 36 H 1.08997 * 109.47306 * 186.83488 * 14 13 12 37 37 H 1.09001 * 109.47315 * 306.84241 * 14 13 12 38 38 H 1.08996 * 109.47319 * 59.99716 * 15 13 12 39 39 H 1.09009 * 109.46688 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.46925 * 299.99303 * 15 13 12 41 41 H 0.96997 * 120.00245 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.06035 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2904 2.3753 -0.0057 5 6 1.9163 3.6070 0.0007 6 6 3.2959 3.6838 0.0002 7 6 4.0569 2.5220 0.0000 8 7 5.4541 2.5998 0.0000 9 6 6.1810 1.6659 -0.6449 10 8 5.6233 0.8087 -1.3027 11 7 7.5260 1.6820 -0.5605 12 6 8.3161 0.6664 -1.2611 13 6 9.8043 0.9105 -1.0029 14 6 10.1898 2.2996 -1.5154 15 6 10.0819 0.8260 0.4994 16 6 10.6170 -0.1345 -1.7230 17 1 10.1208 -0.9362 -2.2497 18 6 11.9941 -0.0671 -1.7094 19 7 12.6948 -0.7529 -2.5859 20 14 12.8645 0.9982 -0.4457 21 1 13.1194 0.2023 0.7818 22 1 14.1558 1.4737 -1.0043 23 1 12.0106 2.1659 -0.1101 24 6 3.4299 1.2838 -0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 0.2119 2.3183 -0.0105 29 1 1.3261 4.5115 0.0007 30 1 3.7827 4.6479 0.0002 31 1 5.8994 3.3259 0.4640 32 1 7.9709 2.3659 -0.0359 33 1 8.0412 -0.3232 -0.8962 34 1 8.1186 0.7269 -2.3313 35 1 9.6931 3.0599 -0.9127 36 1 11.2699 2.4268 -1.4430 37 1 9.8808 2.4017 -2.5557 38 1 9.8073 -0.1636 0.8645 39 1 11.1423 0.9995 0.6832 40 1 9.4941 1.5815 1.0205 41 1 13.6635 -0.7058 -2.5761 42 1 4.0194 0.3789 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315645956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:54 Heat of formation + Delta-G solvation = -20.140234 kcal Electronic energy + Delta-G solvation = -23110.907781 eV Core-core repulsion = 19671.452563 eV Total energy + Delta-G solvation = -3439.455218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68938 -39.64171 -37.73884 -36.68136 -34.38369 -33.37394 -31.54581 -30.69833 -29.25475 -27.39894 -26.37288 -25.90176 -24.86950 -23.05035 -22.09176 -20.64549 -19.25210 -18.68588 -18.08872 -16.38358 -16.17061 -16.09995 -15.89051 -15.82384 -15.27983 -15.16054 -14.43418 -14.07549 -13.75596 -13.57783 -13.24684 -12.94429 -12.81289 -12.65444 -12.46514 -12.22388 -12.03673 -11.94203 -11.52686 -11.31562 -11.17605 -10.46169 -10.33813 -10.28760 -10.20095 -10.05430 -9.85814 -9.19483 -8.66200 -8.65438 -8.43821 -8.39316 -8.05461 -6.16998 -4.12574 1.22854 1.36963 2.71089 3.20100 3.22414 3.29694 3.31291 3.36701 3.80248 4.34671 4.42923 4.66765 4.89484 4.93861 4.95109 5.07418 5.13855 5.24971 5.27003 5.45800 5.70231 5.79745 6.03854 6.05893 6.14387 6.16284 6.28370 6.34575 6.36658 6.46000 6.51496 6.60886 6.69942 6.75375 6.84487 6.93680 7.09158 7.21841 7.32949 7.41763 7.71640 8.13867 8.44119 8.74736 8.90210 9.47933 10.96081 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.003049 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.817851 B = 9181.527553 C = 9649.396192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.146 3.854 4 C -0.233 4.233 5 C -0.062 4.062 6 C -0.190 4.190 7 C 0.216 3.784 8 N -0.691 5.691 9 C 0.696 3.304 10 O -0.572 6.572 11 N -0.731 5.731 12 C 0.158 3.842 13 C 0.030 3.970 14 C -0.144 4.144 15 C -0.146 4.146 16 C -0.516 4.516 17 H 0.077 0.923 18 C 0.078 3.922 19 N -0.888 5.888 20 Si 0.872 3.128 21 H -0.286 1.286 22 H -0.302 1.302 23 H -0.241 1.241 24 C -0.155 4.155 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.407 0.593 32 H 0.394 0.606 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.881 10.314 8.546 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.100 3.900 4 C -0.252 4.252 5 C -0.080 4.080 6 C -0.211 4.211 7 C 0.119 3.881 8 N -0.339 5.339 9 C 0.396 3.604 10 O -0.449 6.449 11 N -0.385 5.385 12 C 0.036 3.964 13 C 0.029 3.971 14 C -0.201 4.201 15 C -0.203 4.203 16 C -0.553 4.553 17 H 0.095 0.905 18 C -0.125 4.125 19 N -0.524 5.524 20 Si 0.704 3.296 21 H -0.213 1.213 22 H -0.230 1.230 23 H -0.166 1.166 24 C -0.177 4.177 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.242 0.758 32 H 0.228 0.772 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.993 9.204 7.828 24.222 hybrid contribution 0.894 1.310 1.104 1.933 sum -20.099 10.514 8.933 24.379 Atomic orbital electron populations 1.23041 0.78575 1.03844 1.01198 1.86108 1.21162 1.26936 1.88550 1.18774 0.91777 0.84123 0.95363 1.21142 0.99841 0.92338 1.11922 1.20625 0.93656 0.96941 0.96826 1.20757 0.93942 0.96884 1.09506 1.17122 0.81796 0.92951 0.96201 1.42740 1.04268 1.30298 1.56595 1.16049 0.82281 0.81902 0.80160 1.90955 1.70501 1.38629 1.44768 1.45549 1.03677 1.34655 1.54617 1.21464 0.90124 0.89048 0.95781 1.18712 0.90995 0.94874 0.92549 1.22352 1.01307 0.96552 0.99917 1.22350 0.99690 1.00034 0.98264 1.20691 0.90763 1.10903 1.32985 0.90511 1.24948 0.97424 0.95189 0.94949 1.69983 1.06738 1.42714 1.32978 0.87563 0.77983 0.82082 0.81982 1.21300 1.23028 1.16636 1.20385 0.91599 0.98563 1.07124 0.88333 0.92753 0.92686 0.85670 0.85584 0.85668 0.75802 0.77160 0.91930 0.91790 0.95965 0.92473 0.93248 0.92882 0.93848 0.95456 0.92560 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.02 10.49 -19.40 -0.20 -4.22 16 3 C 0.15 1.93 6.68 -39.24 -0.26 1.66 16 4 C -0.23 -2.43 9.04 -39.39 -0.36 -2.79 16 5 C -0.06 -0.59 10.03 -39.63 -0.40 -0.99 16 6 C -0.19 -2.00 9.96 -39.37 -0.39 -2.40 16 7 C 0.22 2.87 6.27 -83.71 -0.53 2.34 16 8 N -0.69 -8.81 5.35 -14.24 -0.08 -8.89 16 9 C 0.70 11.63 8.30 -86.92 -0.72 10.90 16 10 O -0.57 -11.89 14.03 5.29 0.07 -11.81 16 11 N -0.73 -11.77 5.00 -65.22 -0.33 -12.10 16 12 C 0.16 3.15 4.50 -4.04 -0.02 3.13 16 13 C 0.03 0.64 0.50 -155.66 -0.08 0.57 16 14 C -0.14 -2.88 7.51 37.15 0.28 -2.60 16 15 C -0.15 -2.89 7.64 37.16 0.28 -2.61 16 16 C -0.52 -13.75 8.61 -34.44 -0.30 -14.05 16 17 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.08 2.15 5.29 -17.82 -0.09 2.05 16 19 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 20 Si 0.87 20.51 22.97 -169.99 -3.90 16.61 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.24 -5.07 4.40 56.52 0.25 -4.82 16 24 C -0.16 -2.35 8.59 -39.25 -0.34 -2.69 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.33 7.67 -51.93 -0.40 -0.06 16 27 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 28 H 0.13 0.98 6.29 -52.49 -0.33 0.65 16 29 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 30 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.41 3.69 8.83 -40.82 -0.36 3.33 16 32 H 0.39 5.33 6.24 -40.82 -0.25 5.08 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.02 0.36 7.06 -51.93 -0.37 -0.01 16 36 H 0.06 1.21 3.80 -51.93 -0.20 1.02 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.90 2.70 -51.92 -0.14 0.76 16 40 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.15 2.57 6.42 -52.49 -0.34 2.23 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -32.81 329.81 -6.42 -39.23 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.80 Total: 8.11 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -1.93 Total: -6.24 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.37 Total: -46.65 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.13 Total: -16.03 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -3.90 Total: 16.61 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.81 -6.42 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315645956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.089 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds