Wall clock time and date at job start Tue Mar 31 2020 07:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35892 * 117.00308 * 2 1 4 4 C 1.38817 * 120.01687 * 359.72871 * 3 2 1 5 5 C 1.38169 * 120.07929 * 179.69292 * 4 3 2 6 6 C 1.38167 * 120.12524 * 0.60432 * 5 4 3 7 7 C 1.38883 * 120.04089 * 359.67738 * 6 5 4 8 8 N 1.39938 * 120.04169 * 180.02562 * 7 6 5 9 9 C 1.34773 * 119.99865 * 213.52903 * 8 7 6 10 10 O 1.21591 * 119.99964 * 5.04273 * 9 8 7 11 11 N 1.34777 * 120.00204 * 185.05064 * 9 8 7 12 12 C 1.46505 * 120.00126 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46697 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47310 * 299.99471 * 13 12 11 15 15 C 1.52999 * 109.47067 * 60.00138 * 13 12 11 16 16 C 1.50707 * 109.46537 * 179.97438 * 13 12 11 17 17 H 1.07995 * 120.00109 * 355.76013 * 16 13 12 18 18 C 1.37877 * 119.99730 * 175.75879 * 16 13 12 19 19 N 1.31513 * 120.00198 * 196.95722 * 18 16 13 20 20 Si 1.86802 * 119.99791 * 16.96213 * 18 16 13 21 21 H 1.48499 * 109.47724 * 89.06333 * 20 18 16 22 22 H 1.48504 * 109.47042 * 209.06281 * 20 18 16 23 23 H 1.48498 * 109.47311 * 329.05690 * 20 18 16 24 24 C 1.38580 * 120.02359 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46653 * 299.99637 * 1 2 3 27 27 H 1.08999 * 109.47546 * 59.99780 * 1 2 3 28 28 H 1.07998 * 119.95861 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.93609 * 180.27245 * 5 4 3 30 30 H 1.08007 * 119.97926 * 179.69291 * 6 5 4 31 31 H 0.96997 * 120.00109 * 33.52035 * 8 7 6 32 32 H 0.97000 * 119.99967 * 359.97438 * 11 9 8 33 33 H 1.08995 * 109.46599 * 299.99602 * 12 11 9 34 34 H 1.08998 * 109.47078 * 59.99724 * 12 11 9 35 35 H 1.09001 * 109.46934 * 66.83462 * 14 13 12 36 36 H 1.08997 * 109.47306 * 186.83488 * 14 13 12 37 37 H 1.09001 * 109.47315 * 306.84241 * 14 13 12 38 38 H 1.08996 * 109.47319 * 59.99716 * 15 13 12 39 39 H 1.09009 * 109.46688 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.46925 * 299.99303 * 15 13 12 41 41 H 0.96997 * 120.00245 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.06035 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2904 2.3753 -0.0057 5 6 1.9163 3.6070 0.0007 6 6 3.2959 3.6838 0.0002 7 6 4.0569 2.5220 0.0000 8 7 5.4541 2.5998 0.0000 9 6 6.1810 1.6659 -0.6449 10 8 5.6233 0.8087 -1.3027 11 7 7.5260 1.6820 -0.5605 12 6 8.3161 0.6664 -1.2611 13 6 9.8043 0.9105 -1.0029 14 6 10.1898 2.2996 -1.5154 15 6 10.0819 0.8260 0.4994 16 6 10.6170 -0.1345 -1.7230 17 1 10.1208 -0.9362 -2.2497 18 6 11.9941 -0.0671 -1.7094 19 7 12.6948 -0.7529 -2.5859 20 14 12.8645 0.9982 -0.4457 21 1 13.1194 0.2023 0.7818 22 1 14.1558 1.4737 -1.0043 23 1 12.0106 2.1659 -0.1101 24 6 3.4299 1.2838 -0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 0.2119 2.3183 -0.0105 29 1 1.3261 4.5115 0.0007 30 1 3.7827 4.6479 0.0002 31 1 5.8994 3.3259 0.4640 32 1 7.9709 2.3659 -0.0359 33 1 8.0412 -0.3232 -0.8962 34 1 8.1186 0.7269 -2.3313 35 1 9.6931 3.0599 -0.9127 36 1 11.2699 2.4268 -1.4430 37 1 9.8808 2.4017 -2.5557 38 1 9.8073 -0.1636 0.8645 39 1 11.1423 0.9995 0.6832 40 1 9.4941 1.5815 1.0205 41 1 13.6635 -0.7058 -2.5761 42 1 4.0194 0.3789 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315645956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:53 Heat of formation + Delta-G solvation = -44.992840 kcal Electronic energy + Delta-G solvation = -23111.985470 eV Core-core repulsion = 19671.452563 eV Total energy + Delta-G solvation = -3440.532908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80152 -40.69091 -38.95069 -38.07041 -35.53988 -35.01276 -33.43578 -31.57864 -30.23913 -28.09975 -27.96646 -27.45850 -26.83431 -24.06390 -23.05000 -21.86874 -20.94706 -19.79982 -19.27461 -18.05218 -17.35031 -17.16719 -17.04654 -16.80294 -16.60926 -16.43843 -15.76988 -15.48562 -15.08798 -14.82556 -14.48214 -14.45447 -14.34895 -13.97964 -13.70450 -13.68335 -13.20811 -12.99027 -12.68602 -12.40019 -12.24116 -12.14641 -12.03733 -11.98402 -11.73633 -11.36376 -11.14465 -11.07986 -10.58280 -10.32316 -10.09178 -9.37759 -8.97554 -8.30663 -6.30856 0.31339 0.49870 1.37087 1.39908 1.50962 1.55677 2.03852 2.36194 2.40907 2.87225 3.05127 3.27090 3.93106 4.08206 4.16378 4.27346 4.32177 4.33915 4.41736 4.42845 4.48606 4.59283 4.70605 4.75491 4.80842 4.86030 4.86659 4.95137 5.08312 5.17618 5.30385 5.35178 5.36639 5.42305 5.52101 5.54634 5.72504 5.81420 5.91792 5.98952 6.31441 6.50268 6.72752 7.01214 7.33145 7.47913 8.86795 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.003049 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.817851 B = 9181.527553 C = 9649.396192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.347 6.347 3 C 0.128 3.872 4 C -0.226 4.226 5 C -0.054 4.054 6 C -0.181 4.181 7 C 0.194 3.806 8 N -0.671 5.671 9 C 0.696 3.304 10 O -0.619 6.619 11 N -0.716 5.716 12 C 0.176 3.824 13 C 0.030 3.970 14 C -0.143 4.143 15 C -0.146 4.146 16 C -0.523 4.523 17 H 0.025 0.975 18 C 0.018 3.982 19 N -0.945 5.945 20 Si 0.933 3.067 21 H -0.285 1.285 22 H -0.311 1.311 23 H -0.188 1.188 24 C -0.192 4.192 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.155 0.845 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.427 0.573 32 H 0.412 0.588 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.264 0.736 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.945 14.760 10.998 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C 0.082 3.918 4 C -0.246 4.246 5 C -0.072 4.072 6 C -0.202 4.202 7 C 0.099 3.901 8 N -0.320 5.320 9 C 0.396 3.604 10 O -0.499 6.499 11 N -0.372 5.372 12 C 0.051 3.949 13 C 0.029 3.971 14 C -0.200 4.200 15 C -0.203 4.203 16 C -0.561 4.561 17 H 0.044 0.956 18 C -0.180 4.180 19 N -0.584 5.584 20 Si 0.761 3.239 21 H -0.212 1.212 22 H -0.240 1.240 23 H -0.112 1.112 24 C -0.214 4.214 25 H 0.131 0.869 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.172 0.828 29 H 0.185 0.815 30 H 0.175 0.825 31 H 0.267 0.733 32 H 0.250 0.750 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.103 13.718 10.334 28.788 hybrid contribution 1.322 -0.172 0.265 1.359 sum -21.782 13.546 10.600 27.754 Atomic orbital electron populations 1.23356 0.76126 1.05408 1.02598 1.86065 1.23851 1.27484 1.88684 1.18963 0.91442 0.85349 0.96007 1.21511 1.01218 0.91599 1.10231 1.21162 0.93581 0.97983 0.94502 1.21120 0.94407 0.96888 1.07751 1.17362 0.81813 0.93371 0.97589 1.42403 1.04182 1.29677 1.55739 1.16164 0.82268 0.81990 0.79977 1.90940 1.71371 1.40726 1.46850 1.45094 1.03400 1.34218 1.54504 1.20943 0.90069 0.89221 0.94658 1.18632 0.90556 0.94261 0.93638 1.22282 1.01082 0.96313 1.00358 1.22278 1.00102 1.01349 0.96522 1.21019 0.91484 1.10982 1.32592 0.95649 1.25872 0.98219 0.97071 0.96810 1.70147 1.07000 1.45706 1.35566 0.86601 0.76690 0.82038 0.78604 1.21204 1.24033 1.11163 1.20314 0.92729 0.98100 1.10247 0.86939 0.90918 0.91507 0.82782 0.81496 0.82491 0.73350 0.75042 0.94182 0.94276 0.91176 0.93328 0.94230 0.93741 0.94290 0.90832 0.92666 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.35 -9.02 10.49 -92.34 -0.97 -9.99 16 3 C 0.13 3.37 6.68 22.49 0.15 3.52 16 4 C -0.23 -4.07 9.04 22.39 0.20 -3.86 16 5 C -0.05 -0.79 10.03 22.24 0.22 -0.57 16 6 C -0.18 -3.14 9.96 22.41 0.22 -2.92 16 7 C 0.19 4.92 6.27 38.13 0.24 5.16 16 8 N -0.67 -15.90 5.35 -317.22 -1.70 -17.60 16 9 C 0.70 23.05 8.30 179.06 1.49 24.54 16 10 O -0.62 -26.97 14.03 -4.00 -0.06 -27.03 16 11 N -0.72 -22.01 5.00 -478.52 -2.39 -24.40 16 12 C 0.18 7.12 4.50 86.38 0.39 7.51 16 13 C 0.03 1.28 0.50 -52.93 -0.03 1.25 16 14 C -0.14 -5.31 7.51 71.98 0.54 -4.77 16 15 C -0.15 -5.32 7.64 71.98 0.55 -4.77 16 16 C -0.52 -29.02 8.61 25.60 0.22 -28.80 16 17 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 18 C 0.02 1.01 5.29 84.65 0.45 1.46 16 19 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 20 Si 0.93 41.66 22.97 68.60 1.58 43.24 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.31 -14.34 7.11 99.48 0.71 -13.64 16 23 H -0.19 -6.89 4.40 99.48 0.44 -6.45 16 24 C -0.19 -6.02 8.59 22.48 0.19 -5.83 16 25 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 0.73 7.67 -2.39 -0.02 0.71 16 27 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 28 H 0.15 1.79 6.29 -2.91 -0.02 1.77 16 29 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 30 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 31 H 0.43 6.23 8.83 -92.71 -0.82 5.41 16 32 H 0.41 9.48 6.24 -92.71 -0.58 8.90 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.93 7.06 -2.39 -0.02 1.91 16 36 H 0.05 1.89 3.80 -2.39 -0.01 1.88 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.47 2.70 -2.38 -0.01 1.46 16 40 H 0.07 2.01 6.86 -2.39 -0.02 1.99 16 41 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.10 4.07 6.42 -2.91 -0.02 4.05 16 Total: -1.00 -79.51 329.81 2.11 -77.40 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.61 Total: 23.75 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.95 Total: -6.70 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -3.79 Total: -100.68 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.03 Total: -37.02 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.58 Total: 43.24 kcal Total: -79.51 2.11 -77.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315645956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.407 kcal (2) G-P(sol) polarization free energy of solvation -79.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds