Wall clock time and date at job start Tue Mar 31 2020 07:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35977 * 116.99586 * 2 1 4 4 C 1.38714 * 119.98616 * 180.02562 * 3 2 1 5 5 C 1.38094 * 120.01697 * 180.30024 * 4 3 2 6 6 C 1.38837 * 119.98400 * 359.45000 * 5 4 3 7 7 N 1.40150 * 120.01375 * 180.28112 * 6 5 4 8 8 C 1.34769 * 119.99799 * 213.54685 * 7 6 5 9 9 O 1.21598 * 120.00097 * 5.31798 * 8 7 6 10 10 N 1.34775 * 120.00177 * 185.31449 * 8 7 6 11 11 C 1.46499 * 120.00185 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47206 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47082 * 299.99623 * 12 11 10 14 14 C 1.52998 * 109.47500 * 59.99663 * 12 11 10 15 15 C 1.50706 * 109.47110 * 179.97438 * 12 11 10 16 16 H 1.07997 * 119.99986 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99854 * 179.97438 * 15 12 11 18 18 N 1.31519 * 120.00037 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99817 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47081 * 60.00135 * 19 17 15 21 21 H 1.48507 * 109.47238 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47370 * 299.99881 * 19 17 15 23 23 C 1.38832 * 119.96805 * 0.54605 * 6 5 4 24 24 C 1.38101 * 119.98933 * 359.73223 * 23 6 5 25 25 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47247 * 299.99316 * 1 2 3 27 27 H 1.08999 * 109.47411 * 60.00107 * 1 2 3 28 28 H 1.08007 * 119.99171 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.00615 * 179.70777 * 5 4 3 30 30 H 0.96996 * 120.00233 * 33.55127 * 7 6 5 31 31 H 0.96996 * 119.99856 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47091 * 299.99638 * 11 10 8 33 33 H 1.08998 * 109.47727 * 59.99292 * 11 10 8 34 34 H 1.08998 * 109.46818 * 59.99763 * 13 12 11 35 35 H 1.08999 * 109.47125 * 180.02562 * 13 12 11 36 36 H 1.09006 * 109.46829 * 299.99994 * 13 12 11 37 37 H 1.09002 * 109.47075 * 59.99732 * 14 12 11 38 38 H 1.08992 * 109.47336 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.46859 * 300.00518 * 14 12 11 40 40 H 0.97000 * 119.99605 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.00550 * 179.70421 * 23 6 5 42 42 H 1.07999 * 119.99260 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0590 2.5141 0.0057 6 6 3.3031 3.6786 0.0010 7 7 3.9394 4.9274 0.0014 8 6 3.3761 5.9704 0.6426 9 8 2.3671 5.8063 1.3011 10 7 3.9311 7.1954 0.5541 11 6 3.3192 8.3290 1.2516 12 6 4.1397 9.5932 0.9879 13 6 5.5674 9.3905 1.4992 14 6 4.1717 9.8763 -0.5153 15 6 3.5097 10.7596 1.7049 16 1 2.6136 10.6138 2.2898 17 6 4.0775 12.0127 1.6142 18 7 5.1691 12.1901 0.9024 19 14 3.2963 13.4585 2.5024 20 1 3.2638 13.1841 3.9614 21 1 4.0928 14.6856 2.2466 22 1 1.9112 13.6554 2.0047 23 6 1.9167 3.6055 0.0015 24 6 1.2904 2.3747 0.0010 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.0195 0.3780 -0.0014 29 1 5.1375 2.5702 0.0101 30 1 4.7851 5.0410 -0.4598 31 1 4.7362 7.3262 0.0292 32 1 2.3022 8.4738 0.8870 33 1 3.2959 8.1273 2.3225 34 1 6.0227 8.5469 0.9803 35 1 6.1518 10.2912 1.3118 36 1 5.5446 9.1888 2.5702 37 1 3.1545 10.0207 -0.8796 38 1 4.7565 10.7766 -0.7031 39 1 4.6270 9.0328 -1.0342 40 1 5.5683 13.0719 0.8384 41 1 1.3282 4.5110 0.0027 42 1 0.2119 2.3178 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315903875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:59 Heat of formation + Delta-G solvation = -41.760776 kcal Electronic energy + Delta-G solvation = -22888.800275 eV Core-core repulsion = 19448.407520 eV Total energy + Delta-G solvation = -3440.392755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.58891 -39.60732 -37.61936 -36.34448 -34.16929 -33.29999 -31.15928 -30.88333 -29.03179 -27.20348 -25.75152 -25.59112 -24.82231 -23.04863 -22.04572 -20.57867 -18.85400 -18.40508 -18.19857 -17.26674 -16.16724 -15.86914 -15.79620 -15.09303 -14.82305 -14.67254 -14.40319 -13.90902 -13.74693 -13.43097 -13.03281 -12.91532 -12.75802 -12.67634 -12.21476 -12.09131 -11.55739 -11.37118 -11.21954 -10.99808 -10.86802 -10.74375 -10.41635 -10.23153 -9.95511 -9.74108 -9.65208 -9.35279 -9.04378 -8.82665 -8.50799 -8.35847 -7.64241 -6.03989 -4.14134 1.26135 1.38213 2.90490 3.17450 3.29216 3.33518 3.37470 3.38178 3.84967 4.36243 4.55720 4.74809 4.79722 4.94689 4.96184 5.19258 5.22865 5.27430 5.33398 5.50597 5.83905 5.93859 6.12369 6.31199 6.33408 6.34033 6.43982 6.48183 6.74517 6.79613 6.84499 6.89553 6.99811 7.00016 7.22131 7.30526 7.35115 7.53235 7.67770 7.98665 8.09182 8.29824 8.37739 8.83508 8.89149 9.51736 10.97455 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.039992 B = 0.002715 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.963913 B =10312.069305 C =10740.993453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.100 3.900 4 C -0.132 4.132 5 C -0.114 4.114 6 C 0.143 3.857 7 N -0.692 5.692 8 C 0.696 3.304 9 O -0.583 6.583 10 N -0.727 5.727 11 C 0.149 3.851 12 C 0.057 3.943 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.507 4.507 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.081 4.081 24 C -0.186 4.186 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.404 0.596 31 H 0.395 0.605 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.261 0.739 41 H 0.141 0.859 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 -19.456 -4.989 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.055 3.945 4 C -0.151 4.151 5 C -0.135 4.135 6 C 0.047 3.953 7 N -0.340 5.340 8 C 0.396 3.604 9 O -0.461 6.461 10 N -0.380 5.380 11 C 0.026 3.974 12 C 0.056 3.944 13 C -0.189 4.189 14 C -0.188 4.188 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.102 4.102 24 C -0.205 4.205 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.239 0.761 31 H 0.230 0.770 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.024 0.976 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.024 0.976 40 H 0.071 0.929 41 H 0.159 0.841 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.169 -19.499 -4.418 20.243 hybrid contribution 0.162 1.119 0.053 1.132 sum -3.007 -18.380 -4.365 19.129 Atomic orbital electron populations 1.23021 0.78642 1.03634 1.01442 1.86045 1.21176 1.27032 1.89275 1.18960 0.92324 0.84058 0.99206 1.20114 0.91250 0.97846 1.05882 1.20665 0.99687 0.90343 1.02818 1.17437 0.91709 0.84017 1.02100 1.42705 1.26261 1.08055 1.56994 1.16076 0.83596 0.80690 0.80047 1.90901 1.26108 1.83829 1.45284 1.45549 1.31240 1.06839 1.54419 1.21655 0.96696 0.83944 0.95074 1.18364 0.92237 0.90159 0.93660 1.21834 0.99050 1.00102 0.97872 1.21830 0.99771 1.00693 0.96539 1.20937 1.10974 0.92243 1.30357 0.92439 1.24877 0.94846 0.98623 0.95150 1.69794 1.19781 1.22801 1.40099 0.86621 0.79318 0.81616 0.80229 1.20264 1.21331 1.20275 1.21058 0.93283 0.98163 0.97673 1.21124 1.00018 0.91749 1.07606 0.88480 0.92655 0.92726 0.85057 0.85082 0.76063 0.76960 0.92730 0.92733 0.97557 0.89573 0.95399 0.95401 0.89595 0.97550 0.92932 0.84140 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.52 10.50 -19.67 -0.21 -3.73 16 3 C 0.10 1.19 6.69 -39.23 -0.26 0.93 16 4 C -0.13 -1.46 9.98 -39.46 -0.39 -1.85 16 5 C -0.11 -1.27 9.96 -39.41 -0.39 -1.67 16 6 C 0.14 1.93 6.28 -83.61 -0.53 1.41 16 7 N -0.69 -9.29 5.36 -14.19 -0.08 -9.36 16 8 C 0.70 12.12 8.30 -86.93 -0.72 11.40 16 9 O -0.58 -12.23 14.03 5.28 0.07 -12.16 16 10 N -0.73 -12.63 4.96 -65.23 -0.32 -12.95 16 11 C 0.15 3.12 4.50 -4.04 -0.02 3.10 16 12 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 13 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 14 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 15 C -0.51 -13.11 8.01 -34.44 -0.28 -13.39 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 18 N -0.89 -23.36 9.35 55.43 0.52 -22.84 16 19 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.08 -1.17 8.65 -39.41 -0.34 -1.51 16 24 C -0.19 -2.29 9.03 -39.46 -0.36 -2.65 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 28 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.40 4.07 8.84 -40.82 -0.36 3.71 16 31 H 0.40 6.08 6.18 -40.82 -0.25 5.82 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 35 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 40 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 41 H 0.14 2.27 6.41 -52.49 -0.34 1.94 16 42 H 0.13 1.32 6.29 -52.49 -0.33 0.99 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -29.80 339.85 -7.70 -37.50 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.92 Total: 8.23 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.87 Total: -5.36 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.12 Total: -45.16 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.13 Total: -15.89 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.80 -7.70 -37.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315903875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.265 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds