Wall clock time and date at job start Tue Mar 31 2020 07:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35977 * 116.99586 * 2 1 4 4 C 1.38714 * 119.98616 * 180.02562 * 3 2 1 5 5 C 1.38094 * 120.01697 * 180.30024 * 4 3 2 6 6 C 1.38837 * 119.98400 * 359.45000 * 5 4 3 7 7 N 1.40150 * 120.01375 * 180.28112 * 6 5 4 8 8 C 1.34769 * 119.99799 * 213.54685 * 7 6 5 9 9 O 1.21598 * 120.00097 * 5.31798 * 8 7 6 10 10 N 1.34775 * 120.00177 * 185.31449 * 8 7 6 11 11 C 1.46499 * 120.00185 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47206 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47082 * 299.99623 * 12 11 10 14 14 C 1.52998 * 109.47500 * 59.99663 * 12 11 10 15 15 C 1.50706 * 109.47110 * 179.97438 * 12 11 10 16 16 H 1.07997 * 119.99986 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99854 * 179.97438 * 15 12 11 18 18 N 1.31519 * 120.00037 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99817 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47081 * 60.00135 * 19 17 15 21 21 H 1.48507 * 109.47238 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47370 * 299.99881 * 19 17 15 23 23 C 1.38832 * 119.96805 * 0.54605 * 6 5 4 24 24 C 1.38101 * 119.98933 * 359.73223 * 23 6 5 25 25 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47247 * 299.99316 * 1 2 3 27 27 H 1.08999 * 109.47411 * 60.00107 * 1 2 3 28 28 H 1.08007 * 119.99171 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.00615 * 179.70777 * 5 4 3 30 30 H 0.96996 * 120.00233 * 33.55127 * 7 6 5 31 31 H 0.96996 * 119.99856 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47091 * 299.99638 * 11 10 8 33 33 H 1.08998 * 109.47727 * 59.99292 * 11 10 8 34 34 H 1.08998 * 109.46818 * 59.99763 * 13 12 11 35 35 H 1.08999 * 109.47125 * 180.02562 * 13 12 11 36 36 H 1.09006 * 109.46829 * 299.99994 * 13 12 11 37 37 H 1.09002 * 109.47075 * 59.99732 * 14 12 11 38 38 H 1.08992 * 109.47336 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.46859 * 300.00518 * 14 12 11 40 40 H 0.97000 * 119.99605 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.00550 * 179.70421 * 23 6 5 42 42 H 1.07999 * 119.99260 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0590 2.5141 0.0057 6 6 3.3031 3.6786 0.0010 7 7 3.9394 4.9274 0.0014 8 6 3.3761 5.9704 0.6426 9 8 2.3671 5.8063 1.3011 10 7 3.9311 7.1954 0.5541 11 6 3.3192 8.3290 1.2516 12 6 4.1397 9.5932 0.9879 13 6 5.5674 9.3905 1.4992 14 6 4.1717 9.8763 -0.5153 15 6 3.5097 10.7596 1.7049 16 1 2.6136 10.6138 2.2898 17 6 4.0775 12.0127 1.6142 18 7 5.1691 12.1901 0.9024 19 14 3.2963 13.4585 2.5024 20 1 3.2638 13.1841 3.9614 21 1 4.0928 14.6856 2.2466 22 1 1.9112 13.6554 2.0047 23 6 1.9167 3.6055 0.0015 24 6 1.2904 2.3747 0.0010 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.0195 0.3780 -0.0014 29 1 5.1375 2.5702 0.0101 30 1 4.7851 5.0410 -0.4598 31 1 4.7362 7.3262 0.0292 32 1 2.3022 8.4738 0.8870 33 1 3.2959 8.1273 2.3225 34 1 6.0227 8.5469 0.9803 35 1 6.1518 10.2912 1.3118 36 1 5.5446 9.1888 2.5702 37 1 3.1545 10.0207 -0.8796 38 1 4.7565 10.7766 -0.7031 39 1 4.6270 9.0328 -1.0342 40 1 5.5683 13.0719 0.8384 41 1 1.3282 4.5110 0.0027 42 1 0.2119 2.3178 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315903875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:56 Heat of formation + Delta-G solvation = -60.329138 kcal Electronic energy + Delta-G solvation = -22889.605460 eV Core-core repulsion = 19448.407520 eV Total energy + Delta-G solvation = -3441.197939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.72379 -40.66862 -38.79071 -37.87407 -35.39250 -34.94180 -32.70401 -32.04364 -29.99661 -28.01013 -27.55067 -27.39821 -26.51736 -24.07325 -23.04879 -21.86161 -20.61042 -19.68198 -19.11523 -18.38209 -17.78036 -17.11472 -16.65878 -16.57355 -16.36023 -16.07333 -15.44340 -15.28791 -14.82857 -14.72667 -14.65915 -14.21071 -13.99303 -13.71071 -13.66363 -13.19473 -13.08696 -12.79262 -12.68136 -12.62032 -12.34036 -12.22881 -12.13248 -11.88768 -11.47708 -11.35931 -11.16909 -10.84309 -10.70546 -10.38905 -9.99164 -9.94913 -8.64017 -8.01780 -6.17270 0.34491 0.40006 1.44729 1.45862 1.52018 1.67319 2.08139 2.42778 2.46764 2.84751 3.22011 3.30178 3.88224 3.93709 4.25681 4.37445 4.41080 4.41223 4.50673 4.53163 4.57022 4.72248 4.74510 4.90769 4.99500 5.06994 5.07683 5.10481 5.21082 5.33547 5.35802 5.40342 5.49065 5.59673 5.68115 5.68423 5.87641 6.03909 6.16504 6.22716 6.44255 6.45995 6.86801 7.05461 7.50207 7.52912 8.96964 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.039992 B = 0.002715 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.963913 B =10312.069305 C =10740.993453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.098 3.902 4 C -0.133 4.133 5 C -0.101 4.101 6 C 0.118 3.882 7 N -0.673 5.673 8 C 0.696 3.304 9 O -0.622 6.622 10 N -0.719 5.719 11 C 0.167 3.833 12 C 0.053 3.947 13 C -0.121 4.121 14 C -0.121 4.121 15 C -0.529 4.529 16 H 0.045 0.955 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.944 3.056 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.277 1.277 23 C -0.104 4.104 24 C -0.192 4.192 25 H 0.122 0.878 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.423 0.577 31 H 0.408 0.592 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.260 0.740 41 H 0.114 0.886 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -21.398 -5.578 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.052 3.948 4 C -0.152 4.152 5 C -0.121 4.121 6 C 0.023 3.977 7 N -0.322 5.322 8 C 0.396 3.604 9 O -0.503 6.503 10 N -0.374 5.374 11 C 0.043 3.957 12 C 0.052 3.948 13 C -0.179 4.179 14 C -0.179 4.179 15 C -0.568 4.568 16 H 0.063 0.937 17 C -0.171 4.171 18 N -0.537 5.537 19 Si 0.771 3.229 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.203 1.203 23 C -0.125 4.125 24 C -0.211 4.211 25 H 0.140 0.860 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.174 0.826 29 H 0.180 0.820 30 H 0.261 0.739 31 H 0.245 0.755 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.268 -21.476 -5.044 22.177 hybrid contribution -0.165 1.582 0.218 1.605 sum -2.433 -19.895 -4.826 20.615 Atomic orbital electron populations 1.23303 0.76893 1.05504 1.01901 1.86041 1.23041 1.26408 1.89000 1.19168 0.92960 0.84219 0.98467 1.20495 0.91208 0.98772 1.04734 1.20949 1.01081 0.89220 1.00856 1.17657 0.91687 0.84537 1.03796 1.42398 1.26589 1.07124 1.56097 1.16156 0.83130 0.81175 0.79923 1.90882 1.27909 1.84457 1.47040 1.45203 1.31564 1.06170 1.54438 1.21170 0.95778 0.84454 0.94294 1.18353 0.92653 0.89963 0.93831 1.21678 0.98314 1.00263 0.97646 1.21675 0.99025 1.00906 0.96275 1.21243 1.10928 0.93819 1.30804 0.93710 1.25437 0.95363 1.00463 0.95852 1.69898 1.20252 1.23054 1.40524 0.85833 0.78539 0.79362 0.79168 1.20294 1.20834 1.20300 1.20980 0.93955 0.97954 0.99567 1.21231 1.00897 0.91355 1.07609 0.85990 0.92491 0.91986 0.82624 0.81969 0.73911 0.75506 0.94391 0.94440 0.94275 0.91884 0.96335 0.96340 0.91893 0.94338 0.93018 0.86842 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -6.55 10.50 -93.30 -0.98 -7.53 16 3 C 0.10 2.16 6.69 22.50 0.15 2.31 16 4 C -0.13 -2.58 9.98 22.35 0.22 -2.35 16 5 C -0.10 -1.96 9.96 22.38 0.22 -1.73 16 6 C 0.12 3.04 6.28 38.10 0.24 3.28 16 7 N -0.67 -17.01 5.36 -317.06 -1.70 -18.70 16 8 C 0.70 23.89 8.30 179.06 1.49 25.37 16 9 O -0.62 -26.59 14.03 -4.02 -0.06 -26.65 16 10 N -0.72 -24.27 4.96 -478.53 -2.37 -26.64 16 11 C 0.17 7.05 4.50 86.38 0.39 7.44 16 12 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 13 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 14 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 15 C -0.53 -27.79 8.01 25.60 0.21 -27.59 16 16 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 17 C 0.03 1.50 5.15 84.65 0.44 1.94 16 18 N -0.90 -47.49 9.35 21.45 0.20 -47.29 16 19 Si 0.94 42.41 29.54 68.60 2.03 44.44 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 C -0.10 -3.00 8.65 22.38 0.19 -2.81 16 24 C -0.19 -4.62 9.03 22.35 0.20 -4.42 16 25 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 27 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 28 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.42 7.37 8.84 -92.71 -0.82 6.55 16 31 H 0.41 11.59 6.18 -92.71 -0.57 11.02 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 35 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 36 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 39 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 40 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 41 H 0.11 3.87 6.41 -2.91 -0.02 3.85 16 42 H 0.14 2.84 6.29 -2.91 -0.02 2.82 16 Total: -1.00 -65.02 339.85 2.77 -62.25 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.34 Total: 24.36 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 6.00 Total: -4.23 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -3.87 Total: -92.64 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.04 Total: -34.18 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -65.02 2.77 -62.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315903875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.925 kcal (2) G-P(sol) polarization free energy of solvation -65.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds