Wall clock time and date at job start Tue Mar 31 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47070 * 2 1 4 4 N 1.30613 * 125.42272 * 90.02303 * 3 2 1 5 5 C 1.33688 * 108.99785 * 179.74757 * 4 3 2 6 6 C 1.50707 * 126.27989 * 180.26055 * 5 4 3 7 7 C 1.36346 * 107.45035 * 0.37242 * 5 4 3 8 8 C 1.46721 * 126.64164 * 179.90115 * 7 5 4 9 9 O 1.21688 * 120.00060 * 352.17438 * 8 7 5 10 10 N 1.34771 * 119.99931 * 172.17829 * 8 7 5 11 11 C 1.46928 * 120.63642 * 172.84578 * 10 8 7 12 12 C 1.53189 * 108.89664 * 126.29638 * 11 10 8 13 13 C 1.53351 * 109.15002 * 54.58101 * 12 11 10 14 14 C 1.50690 * 109.40669 * 178.68243 * 13 12 11 15 15 H 1.08003 * 120.00312 * 120.12104 * 14 13 12 16 16 C 1.37877 * 120.00215 * 300.11750 * 14 13 12 17 17 N 1.31523 * 119.99794 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00317 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47109 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47169 * 120.00214 * 18 16 14 21 21 H 1.48503 * 109.47306 * 240.00213 * 18 16 14 22 22 C 1.53046 * 109.60678 * 298.71517 * 13 12 11 23 23 C 1.46934 * 120.63057 * 352.82138 * 10 8 7 24 24 O 1.33665 * 125.42442 * 270.00384 * 3 2 1 25 25 H 1.09004 * 109.47044 * 299.99394 * 1 2 3 26 26 H 1.08993 * 109.47386 * 60.00056 * 1 2 3 27 27 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46876 * 240.00239 * 2 1 3 29 29 H 1.08999 * 109.46977 * 119.99870 * 2 1 3 30 30 H 1.08999 * 109.46798 * 270.13905 * 6 5 4 31 31 H 1.09004 * 109.46366 * 30.13036 * 6 5 4 32 32 H 1.08994 * 109.47683 * 150.13204 * 6 5 4 33 33 H 1.09004 * 109.58608 * 246.16002 * 11 10 8 34 34 H 1.09004 * 109.58234 * 6.43864 * 11 10 8 35 35 H 1.09005 * 109.49511 * 174.66229 * 12 11 10 36 36 H 1.09002 * 109.49756 * 294.75689 * 12 11 10 37 37 H 1.08998 * 109.42867 * 58.75668 * 13 12 11 38 38 H 0.96995 * 119.99593 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.49211 * 301.42276 * 22 13 12 40 40 H 1.08996 * 109.52240 * 181.34115 * 22 13 12 41 41 H 1.08993 * 109.58702 * 353.42179 * 23 10 8 42 42 H 1.09004 * 109.58411 * 113.70226 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1344 1.0644 5 6 2.7176 3.3416 0.6864 6 6 3.1246 4.4693 1.5995 7 6 2.7206 3.3664 -0.6769 8 6 3.1191 4.4907 -1.5313 9 8 3.3573 5.5765 -1.0363 10 7 3.2213 4.3207 -2.8643 11 6 3.4654 5.4683 -3.7489 12 6 4.6908 5.1720 -4.6191 13 6 4.4768 3.8430 -5.3536 14 6 5.6652 3.5618 -6.2364 15 1 6.2501 2.6665 -6.0857 16 6 6.0058 4.4475 -7.2367 17 7 5.2938 5.5380 -7.4200 18 14 7.4785 4.0986 -8.3316 19 1 8.1063 2.8164 -7.9231 20 1 7.0329 4.0029 -9.7449 21 1 8.4667 5.1990 -8.1976 22 6 4.3200 2.7123 -4.3341 23 6 3.0912 2.9842 -3.4608 24 8 2.2905 2.1513 -1.0892 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2550 5.0869 1.8239 31 1 3.5277 4.0593 2.5256 32 1 3.8854 5.0770 1.1097 33 1 2.5956 5.6304 -4.3855 34 1 3.6501 6.3593 -3.1488 35 1 4.8247 5.9749 -5.3442 36 1 5.5765 5.0999 -3.9878 37 1 3.5770 3.9076 -5.9654 38 1 5.5336 6.1612 -8.1235 39 1 5.2093 2.6633 -3.7057 40 1 4.1918 1.7650 -4.8577 41 1 3.0315 2.2357 -2.6708 42 1 2.1896 2.9431 -4.0720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334291466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:22 Heat of formation + Delta-G solvation = -23.630711 kcal Electronic energy + Delta-G solvation = -23973.710481 eV Core-core repulsion = 20534.103905 eV Total energy + Delta-G solvation = -3439.606576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.50422 -39.56841 -37.02806 -35.38602 -34.40810 -33.55335 -31.23601 -30.97826 -30.15491 -27.86189 -26.21181 -24.95010 -23.11124 -22.70447 -21.54726 -21.33339 -20.27757 -18.87153 -17.15810 -16.98472 -16.54435 -16.01950 -15.72674 -14.89881 -14.62989 -14.56786 -14.34279 -13.68209 -13.42479 -13.29548 -13.09554 -12.87547 -12.78092 -12.66470 -12.33578 -12.28475 -11.98579 -11.78903 -11.52645 -11.22768 -11.00825 -10.98977 -10.78570 -10.65638 -10.40094 -10.14643 -9.86540 -9.63300 -9.21133 -8.98694 -8.84006 -8.41215 -8.09257 -6.05610 -4.12183 0.85491 2.33854 2.38694 3.21374 3.25819 3.34491 3.35543 3.38112 3.76804 4.38704 4.56157 4.65678 4.79816 4.83082 4.94937 5.24310 5.29167 5.42849 5.46591 5.49631 5.63006 5.66523 5.73895 5.78689 5.83242 5.88017 5.93684 6.11843 6.17966 6.29032 6.36387 6.39588 6.57766 6.73206 6.89459 7.12306 7.24834 7.51852 7.65179 7.73151 7.87629 8.00771 8.27323 8.36349 8.91159 9.53214 11.00042 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.003973 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.407509 B = 7046.567343 C = 7800.513751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.030 4.030 3 C 0.206 3.794 4 N -0.488 5.488 5 C 0.071 3.929 6 C -0.076 4.076 7 C -0.104 4.104 8 C 0.599 3.401 9 O -0.528 6.528 10 N -0.587 5.587 11 C 0.109 3.891 12 C -0.123 4.123 13 C 0.048 3.952 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.122 4.122 23 C 0.096 3.904 24 O -0.177 6.177 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.040 0.960 37 H 0.028 0.972 38 H 0.260 0.740 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 -8.339 13.512 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.068 4.068 3 C 0.000 4.000 4 N -0.218 5.218 5 C -0.053 4.053 6 C -0.133 4.133 7 C -0.158 4.158 8 C 0.385 3.615 9 O -0.408 6.408 10 N -0.318 5.318 11 C -0.012 4.012 12 C -0.161 4.161 13 C 0.029 3.971 14 C -0.551 4.551 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.160 4.160 23 C -0.026 4.026 24 O -0.064 6.064 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.630 -7.842 14.152 18.337 hybrid contribution 0.882 -0.027 -1.432 1.682 sum -7.748 -7.868 12.720 16.844 Atomic orbital electron populations 1.21783 0.92857 1.03085 1.03112 1.20155 0.97022 0.84081 1.05514 1.26631 0.97163 0.96788 0.79375 1.70290 1.17729 1.03715 1.30049 1.22007 0.97995 0.94009 0.91295 1.20317 1.02672 0.93088 0.97200 1.23128 1.11583 0.86022 0.95114 1.16509 0.78388 0.84994 0.81600 1.90810 1.52283 1.24294 1.73404 1.48176 1.68132 1.10382 1.05064 1.22015 1.00302 0.87030 0.91808 1.22086 0.93314 1.03308 0.97398 1.18716 0.97464 0.89356 0.91556 1.21209 1.12579 1.06753 1.14586 0.92639 1.24966 0.96642 0.95104 0.97240 1.69852 1.39312 1.11287 1.32463 0.86551 0.82802 0.78291 0.80448 1.19846 1.21027 1.21013 1.22009 0.95139 1.00996 0.97865 1.22260 1.00086 0.82558 0.97652 1.84702 1.63505 1.22178 1.36042 0.91764 0.91938 0.90735 0.88444 0.87491 0.90162 0.90743 0.88881 0.91787 0.90229 0.87564 0.94161 0.95360 0.92963 0.92906 0.91852 0.89664 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.03 -0.23 6.56 -27.88 -0.18 -0.42 16 3 C 0.21 2.60 7.57 -12.80 -0.10 2.50 16 4 N -0.49 -7.02 11.26 -7.07 -0.08 -7.10 16 5 C 0.07 1.09 7.16 -82.46 -0.59 0.50 16 6 C -0.08 -0.98 9.80 36.01 0.35 -0.63 16 7 C -0.10 -1.71 6.79 -36.84 -0.25 -1.96 16 8 C 0.60 11.10 7.65 -12.84 -0.10 11.01 16 9 O -0.53 -10.58 14.33 5.20 0.07 -10.51 16 10 N -0.59 -10.97 2.97 -174.29 -0.52 -11.49 16 11 C 0.11 2.16 6.43 -3.71 -0.02 2.14 16 12 C -0.12 -2.81 5.17 -26.45 -0.14 -2.95 16 13 C 0.05 1.13 2.07 -91.57 -0.19 0.94 16 14 C -0.51 -13.59 8.56 -34.45 -0.29 -13.88 16 15 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -24.51 11.31 55.43 0.63 -23.89 16 18 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 23 C 0.10 1.66 6.12 -3.71 -0.02 1.64 16 24 O -0.18 -2.59 7.45 4.44 0.03 -2.56 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.31 6.66 -51.93 -0.35 0.97 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.57 7.00 -51.93 -0.36 1.20 16 35 H 0.11 2.70 6.05 -51.93 -0.31 2.38 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.35 4.26 -52.73 -0.22 1.13 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -29.94 338.42 -7.47 -37.41 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.28 Total: 0.01 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.40 Total: -2.76 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.03 Total: -42.48 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.11 Total: -13.07 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.94 -7.47 -37.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334291466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.776 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds