Wall clock time and date at job start Tue Mar 31 2020 06:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47070 * 2 1 4 4 N 1.30613 * 125.42272 * 90.02303 * 3 2 1 5 5 C 1.33688 * 108.99785 * 179.74757 * 4 3 2 6 6 C 1.50707 * 126.27989 * 180.26055 * 5 4 3 7 7 C 1.36346 * 107.45035 * 0.37242 * 5 4 3 8 8 C 1.46721 * 126.64164 * 179.90115 * 7 5 4 9 9 O 1.21688 * 120.00060 * 352.17438 * 8 7 5 10 10 N 1.34771 * 119.99931 * 172.17829 * 8 7 5 11 11 C 1.46928 * 120.63642 * 172.84578 * 10 8 7 12 12 C 1.53189 * 108.89664 * 126.29638 * 11 10 8 13 13 C 1.53351 * 109.15002 * 54.58101 * 12 11 10 14 14 C 1.50690 * 109.40669 * 178.68243 * 13 12 11 15 15 H 1.08003 * 120.00312 * 120.12104 * 14 13 12 16 16 C 1.37877 * 120.00215 * 300.11750 * 14 13 12 17 17 N 1.31523 * 119.99794 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00317 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47109 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47169 * 120.00214 * 18 16 14 21 21 H 1.48503 * 109.47306 * 240.00213 * 18 16 14 22 22 C 1.53046 * 109.60678 * 298.71517 * 13 12 11 23 23 C 1.46934 * 120.63057 * 352.82138 * 10 8 7 24 24 O 1.33665 * 125.42442 * 270.00384 * 3 2 1 25 25 H 1.09004 * 109.47044 * 299.99394 * 1 2 3 26 26 H 1.08993 * 109.47386 * 60.00056 * 1 2 3 27 27 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46876 * 240.00239 * 2 1 3 29 29 H 1.08999 * 109.46977 * 119.99870 * 2 1 3 30 30 H 1.08999 * 109.46798 * 270.13905 * 6 5 4 31 31 H 1.09004 * 109.46366 * 30.13036 * 6 5 4 32 32 H 1.08994 * 109.47683 * 150.13204 * 6 5 4 33 33 H 1.09004 * 109.58608 * 246.16002 * 11 10 8 34 34 H 1.09004 * 109.58234 * 6.43864 * 11 10 8 35 35 H 1.09005 * 109.49511 * 174.66229 * 12 11 10 36 36 H 1.09002 * 109.49756 * 294.75689 * 12 11 10 37 37 H 1.08998 * 109.42867 * 58.75668 * 13 12 11 38 38 H 0.96995 * 119.99593 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.49211 * 301.42276 * 22 13 12 40 40 H 1.08996 * 109.52240 * 181.34115 * 22 13 12 41 41 H 1.08993 * 109.58702 * 353.42179 * 23 10 8 42 42 H 1.09004 * 109.58411 * 113.70226 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1344 1.0644 5 6 2.7176 3.3416 0.6864 6 6 3.1246 4.4693 1.5995 7 6 2.7206 3.3664 -0.6769 8 6 3.1191 4.4907 -1.5313 9 8 3.3573 5.5765 -1.0363 10 7 3.2213 4.3207 -2.8643 11 6 3.4654 5.4683 -3.7489 12 6 4.6908 5.1720 -4.6191 13 6 4.4768 3.8430 -5.3536 14 6 5.6652 3.5618 -6.2364 15 1 6.2501 2.6665 -6.0857 16 6 6.0058 4.4475 -7.2367 17 7 5.2938 5.5380 -7.4200 18 14 7.4785 4.0986 -8.3316 19 1 8.1063 2.8164 -7.9231 20 1 7.0329 4.0029 -9.7449 21 1 8.4667 5.1990 -8.1976 22 6 4.3200 2.7123 -4.3341 23 6 3.0912 2.9842 -3.4608 24 8 2.2905 2.1513 -1.0892 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2550 5.0869 1.8239 31 1 3.5277 4.0593 2.5256 32 1 3.8854 5.0770 1.1097 33 1 2.5956 5.6304 -4.3855 34 1 3.6501 6.3593 -3.1488 35 1 4.8247 5.9749 -5.3442 36 1 5.5765 5.0999 -3.9878 37 1 3.5770 3.9076 -5.9654 38 1 5.5336 6.1612 -8.1235 39 1 5.2093 2.6633 -3.7057 40 1 4.1918 1.7650 -4.8577 41 1 3.0315 2.2357 -2.6708 42 1 2.1896 2.9431 -4.0720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334291466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:16 Heat of formation + Delta-G solvation = -42.466106 kcal Electronic energy + Delta-G solvation = -23974.527245 eV Core-core repulsion = 20534.103905 eV Total energy + Delta-G solvation = -3440.423340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.61 seconds Orbital eigenvalues (eV) -44.61325 -41.05285 -38.60990 -36.54884 -35.35072 -35.16425 -33.02149 -32.27559 -31.50105 -29.13761 -27.86819 -25.95429 -24.68911 -24.22319 -22.82000 -22.37560 -21.66992 -20.46537 -18.63103 -18.36319 -18.14537 -17.29743 -17.06403 -16.52576 -16.08570 -15.71875 -15.32267 -15.06029 -14.81020 -14.67494 -14.45027 -14.29442 -14.14114 -13.96912 -13.56676 -13.38967 -13.21385 -13.08055 -12.84860 -12.60532 -12.46784 -12.24475 -12.15614 -12.05276 -12.00013 -11.84389 -11.49317 -11.28977 -10.96861 -10.85215 -10.43444 -10.07084 -9.60713 -8.09567 -6.23156 -0.32211 1.21999 1.27445 1.39906 1.43076 1.52950 1.84455 2.00942 2.43139 2.79717 3.17526 3.38028 3.59296 3.91843 4.14786 4.16863 4.22166 4.22988 4.26559 4.38189 4.44670 4.54596 4.60729 4.65142 4.67537 4.78121 4.81625 4.88938 4.97770 5.01461 5.07781 5.09848 5.16994 5.24771 5.34537 5.38265 5.43877 5.63398 5.93573 6.05804 6.21109 6.35566 6.48154 6.83385 6.87311 7.45133 8.94461 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.003973 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.407509 B = 7046.567343 C = 7800.513751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.032 4.032 3 C 0.225 3.775 4 N -0.507 5.507 5 C 0.078 3.922 6 C -0.075 4.075 7 C -0.137 4.137 8 C 0.599 3.401 9 O -0.551 6.551 10 N -0.593 5.593 11 C 0.121 3.879 12 C -0.112 4.112 13 C 0.045 3.955 14 C -0.533 4.533 15 H 0.052 0.948 16 C 0.015 3.985 17 N -0.914 5.914 18 Si 0.951 3.049 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.284 1.284 22 C -0.113 4.113 23 C 0.104 3.896 24 O -0.182 6.182 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.007 0.993 38 H 0.261 0.739 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.322 -10.537 14.523 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.069 4.069 3 C 0.020 3.980 4 N -0.236 5.236 5 C -0.046 4.046 6 C -0.132 4.132 7 C -0.191 4.191 8 C 0.388 3.612 9 O -0.432 6.432 10 N -0.324 5.324 11 C -0.001 4.001 12 C -0.150 4.150 13 C 0.026 3.974 14 C -0.571 4.571 15 H 0.070 0.930 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.777 3.223 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.210 1.210 22 C -0.151 4.151 23 C -0.017 4.017 24 O -0.071 6.071 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.026 0.974 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.290 -10.057 15.176 20.439 hybrid contribution 1.044 0.570 -1.673 2.053 sum -8.246 -9.487 13.503 18.448 Atomic orbital electron populations 1.21783 0.91811 1.04631 1.02256 1.20570 0.97680 0.81159 1.07523 1.27784 0.94077 0.97761 0.78374 1.70376 1.19058 1.03550 1.30641 1.22393 0.96342 0.94701 0.91198 1.20370 1.02759 0.92602 0.97464 1.22654 1.14741 0.86609 0.95084 1.16698 0.77679 0.85441 0.81424 1.90785 1.53213 1.25457 1.73778 1.48168 1.68583 1.10408 1.05243 1.21726 0.98998 0.87713 0.91640 1.21842 0.94133 1.02212 0.96845 1.18686 0.95538 0.91083 0.92096 1.21572 1.13500 1.06677 1.15331 0.92986 1.25687 0.99081 0.95012 0.98590 1.69973 1.40583 1.11907 1.32920 0.85614 0.79754 0.78134 0.78791 1.19291 1.20547 1.20981 1.21860 0.96087 1.00017 0.97141 1.22257 0.99127 0.82377 0.97939 1.84627 1.63897 1.21728 1.36825 0.92681 0.92747 0.88010 0.86288 0.85582 0.89061 0.88776 0.90286 0.91099 0.90339 0.90307 0.95845 0.97442 0.92973 0.93884 0.90525 0.87640 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 71.98 0.71 -0.79 16 2 C -0.03 -0.38 6.56 29.85 0.20 -0.18 16 3 C 0.23 5.11 7.57 88.29 0.67 5.78 16 4 N -0.51 -13.50 11.26 -291.06 -3.28 -16.78 16 5 C 0.08 2.28 7.16 41.84 0.30 2.58 16 6 C -0.08 -1.87 9.80 71.24 0.70 -1.17 16 7 C -0.14 -4.38 6.79 24.05 0.16 -4.21 16 8 C 0.60 22.14 7.65 86.46 0.66 22.80 16 9 O -0.55 -22.30 14.33 -4.31 -0.06 -22.36 16 10 N -0.59 -22.08 2.97 -823.55 -2.45 -24.53 16 11 C 0.12 4.87 6.43 86.36 0.56 5.42 16 12 C -0.11 -5.28 5.17 30.78 0.16 -5.12 16 13 C 0.04 2.14 2.07 -11.41 -0.02 2.12 16 14 C -0.53 -28.57 8.56 25.60 0.22 -28.35 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 16 C 0.02 0.82 5.30 84.65 0.45 1.27 16 17 N -0.91 -51.36 11.31 21.45 0.24 -51.12 16 18 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C -0.11 -4.41 5.30 30.67 0.16 -4.25 16 23 C 0.10 3.48 6.12 86.36 0.53 4.01 16 24 O -0.18 -4.99 7.45 -7.01 -0.05 -5.04 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 2.22 6.66 -2.39 -0.02 2.20 16 33 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.08 3.16 7.00 -2.38 -0.02 3.15 16 35 H 0.08 4.17 6.05 -2.38 -0.01 4.15 16 36 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.11 3.14 4.26 -15.04 -0.06 3.07 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -65.11 338.42 2.84 -62.27 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.96 Total: 12.72 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 5.45 Total: -0.11 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -5.48 Total: -92.43 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.11 Total: -27.40 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.11 2.84 -62.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334291466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.800 kcal (2) G-P(sol) polarization free energy of solvation -65.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.61 seconds