Wall clock time and date at job start Tue Mar 31 2020 06:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46990 * 2 1 4 4 C 1.50698 * 109.47012 * 119.99649 * 2 1 3 5 5 C 1.35315 * 126.66359 * 120.00399 * 4 2 1 6 6 C 1.42275 * 103.92402 * 179.97438 * 5 4 2 7 7 C 1.48328 * 126.94071 * 179.97438 * 6 5 4 8 8 O 1.21500 * 119.99727 * 353.79908 * 7 6 5 9 9 N 1.34777 * 120.00399 * 173.79188 * 7 6 5 10 10 C 1.46916 * 120.63449 * 184.64383 * 9 7 6 11 11 C 1.53621 * 108.54535 * 126.37047 * 10 9 7 12 12 C 1.53039 * 109.24222 * 54.85423 * 11 10 9 13 13 C 1.50700 * 109.45173 * 178.49835 * 12 11 10 14 14 H 1.08003 * 120.00061 * 120.06690 * 13 12 11 15 15 C 1.37878 * 120.00062 * 300.06083 * 13 12 11 16 16 N 1.31517 * 119.99952 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47259 * 90.00480 * 17 15 13 19 19 H 1.48502 * 109.47355 * 210.00303 * 17 15 13 20 20 H 1.48502 * 109.47301 * 330.00627 * 17 15 13 21 21 C 1.53039 * 109.54158 * 298.51766 * 12 11 10 22 22 C 1.46923 * 120.62434 * 4.92804 * 9 7 6 23 23 N 1.30981 * 106.11906 * 359.97438 * 6 5 4 24 24 O 1.20900 * 111.44289 * 0.02562 * 23 6 5 25 25 H 1.08999 * 109.47101 * 300.00140 * 1 2 3 26 26 H 1.09003 * 109.47055 * 60.00210 * 1 2 3 27 27 H 1.08999 * 109.46252 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47557 * 240.00136 * 2 1 3 29 29 H 1.08996 * 109.47121 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47358 * 300.00319 * 3 2 1 31 31 H 1.08999 * 109.46860 * 59.99709 * 3 2 1 32 32 H 1.08007 * 128.04030 * 359.96199 * 5 4 2 33 33 H 1.08998 * 109.59114 * 246.20696 * 10 9 7 34 34 H 1.09006 * 109.58615 * 6.62895 * 10 9 7 35 35 H 1.08998 * 109.63493 * 294.86794 * 11 10 9 36 36 H 1.08996 * 109.43566 * 174.72603 * 11 10 9 37 37 H 1.09001 * 109.45898 * 58.53289 * 12 11 10 38 38 H 0.96996 * 120.00153 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.49162 * 301.41183 * 21 12 11 40 40 H 1.08997 * 109.52794 * 181.33170 * 21 12 11 41 41 H 1.09002 * 109.59129 * 353.36862 * 22 9 7 42 42 H 1.08999 * 109.59168 * 113.65683 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8134 -1.8148 1.2636 6 6 2.9920 -2.0663 2.6525 7 6 3.7716 -3.1692 3.2657 8 8 4.2471 -4.0399 2.5644 9 7 3.9525 -3.2054 4.6008 10 6 4.8058 -4.2328 5.2130 11 6 5.8562 -3.5359 6.0911 12 6 5.1486 -2.6256 7.0974 13 6 6.1729 -1.9677 7.9857 14 1 6.2522 -0.8909 8.0128 15 6 7.0088 -2.7403 8.7637 16 7 6.9125 -4.0515 8.7303 17 14 8.2789 -1.9248 9.8641 18 1 7.6836 -1.6658 11.1997 19 1 9.4544 -2.8203 10.0114 20 1 8.7087 -0.6399 9.2562 21 6 4.3581 -1.5508 6.3479 22 6 3.2952 -2.2218 5.4721 23 7 2.3289 -1.1272 3.2803 24 8 1.7931 -0.3704 2.5045 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8935 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.2091 -2.3754 0.4295 33 1 4.1960 -4.8969 5.8255 34 1 5.3036 -4.8074 4.4318 35 1 6.5196 -2.9394 5.4649 36 1 6.4377 -4.2868 6.6259 37 1 4.4669 -3.2188 7.7069 38 1 7.5008 -4.5951 9.2774 39 1 5.0357 -0.9730 5.7191 40 1 3.8734 -0.8883 7.0650 41 1 2.7960 -1.4690 4.8620 42 1 2.5629 -2.7247 6.1037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335899404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:54 Heat of formation + Delta-G solvation = 4.418354 kcal Electronic energy + Delta-G solvation = -23667.093613 eV Core-core repulsion = 20228.703335 eV Total energy + Delta-G solvation = -3438.390277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -46.22022 -41.19377 -38.57624 -37.00693 -35.63396 -35.00013 -33.00734 -32.20830 -31.41729 -28.34908 -27.98211 -26.30952 -24.69365 -24.24293 -23.86389 -22.79515 -21.19590 -19.79073 -18.90209 -18.69885 -18.22482 -17.85087 -17.03431 -16.56391 -16.29056 -16.06323 -15.40147 -14.98994 -14.92620 -14.70029 -14.52819 -14.29642 -14.10240 -14.04770 -13.73148 -13.10851 -12.97843 -12.86323 -12.69219 -12.47556 -12.33491 -12.13803 -12.12849 -12.00550 -11.76337 -11.59193 -11.52911 -11.48760 -10.94020 -10.82023 -10.49533 -10.44834 -9.75039 -8.11297 -6.25632 -0.01953 0.63715 1.39699 1.40973 1.50663 1.64190 1.95798 2.00587 2.41456 2.75401 3.15108 3.29125 3.72201 3.82135 4.01779 4.15232 4.18297 4.21790 4.25622 4.34074 4.39859 4.51309 4.56635 4.65532 4.84009 4.86255 4.87043 4.97632 5.01935 5.04211 5.05959 5.15615 5.18599 5.34218 5.40571 5.42174 5.44210 5.60567 5.90410 6.03108 6.21886 6.33166 6.75029 6.84267 7.05676 7.42527 8.92649 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.003469 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.662144 B = 8068.474870 C = 8605.741838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.009 4.009 3 C -0.152 4.152 4 C -0.005 4.005 5 C -0.190 4.190 6 C -0.039 4.039 7 C 0.585 3.415 8 O -0.565 6.565 9 N -0.587 5.587 10 C 0.118 3.882 11 C -0.110 4.110 12 C 0.045 3.955 13 C -0.535 4.535 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 0.954 3.046 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.110 4.110 22 C 0.082 3.918 23 N -0.341 5.341 24 O 0.124 5.876 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.127 0.873 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.194 0.806 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.080 0.920 37 H 0.005 0.995 38 H 0.262 0.738 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 9.309 -18.665 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 C -0.209 4.209 4 C -0.068 4.068 5 C -0.213 4.213 6 C -0.196 4.196 7 C 0.373 3.627 8 O -0.444 6.444 9 N -0.318 5.318 10 C -0.003 4.003 11 C -0.149 4.149 12 C 0.027 3.973 13 C -0.573 4.573 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.554 5.554 17 Si 0.780 3.220 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.149 4.149 22 C -0.040 4.040 23 N -0.044 5.044 24 O 0.051 5.949 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.212 0.788 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.098 0.902 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.149 0.851 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.209 8.922 -17.607 23.750 hybrid contribution 1.347 -0.465 0.549 1.528 sum -11.862 8.457 -17.057 22.431 Atomic orbital electron populations 1.21919 0.92035 1.02862 1.03945 1.20109 0.97502 0.96400 0.88837 1.21926 1.01397 0.93628 1.03954 1.25154 0.98345 0.96089 0.87257 1.22644 1.03522 0.99690 0.95439 1.23392 1.03679 0.98168 0.94323 1.17387 0.79659 0.83830 0.81873 1.90713 1.52207 1.39455 1.62001 1.48186 1.46759 1.31464 1.05432 1.21838 0.92505 0.89648 0.96336 1.21863 0.96855 1.00177 0.96015 1.18624 0.93715 0.92694 0.92306 1.21538 1.18528 0.92995 1.24213 0.93023 1.25727 0.99202 0.95422 0.98157 1.69966 1.39788 1.04812 1.40874 0.85620 0.78725 0.78420 0.79267 1.19995 1.20925 1.19562 1.21820 0.96857 0.98455 0.97730 1.22719 0.95163 0.92191 0.93968 1.73835 1.10776 1.03206 1.16601 1.84745 1.53438 1.42249 1.14478 0.92238 0.88987 0.92395 0.85505 0.92658 0.88924 0.92271 0.78848 0.91283 0.90375 0.95730 0.90156 0.97736 0.92892 0.94009 0.91028 0.85098 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.18 71.98 0.66 -0.51 16 2 C -0.01 -0.09 3.34 -11.54 -0.04 -0.13 16 3 C -0.15 -1.30 9.18 71.98 0.66 -0.64 16 4 C 0.00 -0.09 5.98 25.01 0.15 0.06 16 5 C -0.19 -4.48 10.91 22.60 0.25 -4.23 16 6 C -0.04 -1.23 6.95 42.96 0.30 -0.93 16 7 C 0.59 22.66 7.72 86.93 0.67 23.33 16 8 O -0.56 -24.13 16.39 -3.71 -0.06 -24.19 16 9 N -0.59 -23.43 2.97 -820.94 -2.43 -25.86 16 10 C 0.12 5.05 6.45 86.51 0.56 5.61 16 11 C -0.11 -5.44 5.17 30.82 0.16 -5.28 16 12 C 0.05 2.28 2.06 -11.51 -0.02 2.26 16 13 C -0.53 -29.67 8.56 25.60 0.22 -29.45 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 15 C 0.01 0.76 5.30 84.65 0.45 1.21 16 16 N -0.91 -52.62 11.30 21.45 0.24 -52.37 16 17 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 C -0.11 -4.68 5.30 30.67 0.16 -4.51 16 22 C 0.08 3.03 6.33 86.36 0.55 3.58 16 23 N -0.34 -10.05 8.50 -49.52 -0.42 -10.47 16 24 O 0.12 2.90 11.18 71.91 0.80 3.70 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.13 0.73 8.12 -2.39 -0.02 0.71 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.19 3.81 8.06 -2.91 -0.02 3.78 16 33 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.08 3.32 7.03 -2.38 -0.02 3.30 16 35 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 4.38 6.03 -2.39 -0.01 4.36 16 37 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.13 4.48 3.75 -46.61 -0.18 4.30 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -66.72 340.37 5.72 -61.00 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.85 Total: 11.95 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 4.72 Total: -9.63 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -2.61 Total: -88.71 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.74 Total: -20.49 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.72 5.72 -61.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335899404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.419 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds