Wall clock time and date at job start Tue Mar 31 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 C 1.52998 * 109.47352 * 120.00140 * 2 1 3 5 5 C 1.50699 * 109.47641 * 175.00033 * 4 2 1 6 6 C 1.38014 * 119.51820 * 125.00105 * 5 4 2 7 7 C 1.39925 * 119.13755 * 179.97438 * 6 5 4 8 8 C 1.48160 * 120.89219 * 180.02562 * 7 6 5 9 9 O 1.21506 * 120.00324 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99713 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99890 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46884 * 180.02562 * 11 10 8 13 13 C 1.50705 * 109.46829 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00349 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99888 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99793 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 119.99844 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47434 * 89.99860 * 17 15 13 19 19 H 1.48501 * 109.47109 * 209.99968 * 17 15 13 20 20 H 1.48498 * 109.47335 * 329.99797 * 17 15 13 21 21 C 1.39616 * 118.21189 * 359.97438 * 7 6 5 22 22 C 1.38849 * 118.95107 * 0.25462 * 21 7 6 23 23 O 1.35682 * 119.62290 * 179.74921 * 22 21 7 24 24 N 1.31883 * 119.50810 * 305.02150 * 5 4 2 25 25 H 1.09001 * 109.47191 * 300.00106 * 1 2 3 26 26 H 1.09001 * 109.46806 * 59.99260 * 1 2 3 27 27 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47191 * 239.99894 * 2 1 3 29 29 H 1.08994 * 109.47383 * 300.00183 * 3 2 1 30 30 H 1.09010 * 109.47096 * 60.00021 * 3 2 1 31 31 H 1.09003 * 109.47560 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47238 * 54.99562 * 4 2 1 33 33 H 1.09007 * 109.47348 * 295.00171 * 4 2 1 34 34 H 1.08008 * 120.43057 * 359.97438 * 6 5 4 35 35 H 0.96996 * 119.99900 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.46879 * 299.99490 * 11 10 8 37 37 H 1.08998 * 109.47364 * 59.99505 * 11 10 8 38 38 H 1.08997 * 109.47093 * 299.99719 * 12 11 10 39 39 H 1.09001 * 109.47399 * 60.00358 * 12 11 10 40 40 H 0.97003 * 119.99473 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.52082 * 179.97438 * 21 7 6 42 42 H 0.96702 * 114.00492 * 89.99722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1889 6 6 4.3012 -0.3422 2.2333 7 6 5.6950 -0.4473 2.1693 8 6 6.5476 0.0622 3.2687 9 8 6.0381 0.5801 4.2426 10 7 7.8884 -0.0488 3.1885 11 6 8.7314 0.4544 4.2758 12 6 10.2027 0.2069 3.9368 13 6 11.0699 0.7251 5.0551 14 1 10.6170 1.1854 5.9207 15 6 12.4416 0.6126 4.9725 16 7 12.9931 0.0525 3.9181 17 14 13.5165 1.2543 6.3589 18 1 13.7367 0.1750 7.3548 19 1 14.8237 1.6943 5.8086 20 1 12.8437 2.4039 7.0154 21 6 6.2607 -1.0461 1.0420 22 6 5.4239 -1.5056 0.0338 23 8 5.9593 -2.0851 -1.0700 24 7 4.1113 -1.3880 0.1386 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9564 0.8901 31 1 3.1301 1.4425 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1584 2.1370 34 1 3.8257 0.1143 3.0890 35 1 8.2952 -0.4619 2.4109 36 1 8.5628 1.5241 4.4010 37 1 8.4791 -0.0639 5.2009 38 1 10.3716 -0.8626 3.8113 39 1 10.4547 0.7256 3.0119 40 1 13.9582 -0.0269 3.8602 41 1 7.3324 -1.1462 0.9537 42 1 6.0730 -3.0425 -0.9958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345149985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:56 Heat of formation + Delta-G solvation = -70.195242 kcal Electronic energy + Delta-G solvation = -22441.961706 eV Core-core repulsion = 19000.335940 eV Total energy + Delta-G solvation = -3441.625766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99459 -39.15733 -37.74408 -36.07788 -35.06230 -33.21582 -32.58210 -31.09353 -29.65861 -27.39359 -27.21976 -25.55409 -23.80266 -23.01297 -21.21965 -20.71038 -19.92656 -18.84377 -17.24645 -16.96274 -16.39500 -15.90913 -15.68199 -15.26558 -15.07295 -14.86322 -14.72229 -14.49295 -14.22736 -13.41501 -13.34506 -12.96025 -12.75138 -12.55193 -12.40649 -12.33611 -11.98148 -11.92347 -11.28156 -11.27292 -11.15714 -11.08808 -10.87094 -10.69632 -10.43429 -10.21325 -10.00684 -9.76068 -9.50642 -9.29176 -9.02351 -8.68023 -8.44420 -6.14258 -4.17481 0.55640 0.75094 2.84111 3.26152 3.26565 3.32679 3.35147 3.40891 3.64325 4.18832 4.36524 4.49589 4.65318 4.70764 4.79106 4.83278 4.88807 5.12121 5.22996 5.26888 5.33845 5.40636 5.43959 5.53352 5.62031 5.64065 5.74989 5.88360 5.88821 6.05201 6.16185 6.21522 6.23789 6.24640 6.61549 6.71613 7.23520 7.43218 7.53163 7.66040 7.78435 7.83643 8.19532 8.39168 8.88141 9.47693 10.97308 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028943 B = 0.002691 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.188988 B =10402.887241 C =11063.061905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.065 4.065 5 C 0.153 3.847 6 C -0.127 4.127 7 C -0.061 4.061 8 C 0.547 3.453 9 O -0.536 6.536 10 N -0.710 5.710 11 C 0.120 3.880 12 C 0.012 3.988 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.162 4.162 22 C 0.312 3.688 23 O -0.479 6.479 24 N -0.488 5.488 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.398 0.602 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.147 0.853 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.265 -4.198 -9.415 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.103 4.103 5 C 0.016 3.984 6 C -0.147 4.147 7 C -0.072 4.072 8 C 0.332 3.668 9 O -0.414 6.414 10 N -0.360 5.360 11 C -0.002 4.002 12 C -0.026 4.026 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.184 4.184 22 C 0.133 3.867 23 O -0.286 6.286 24 N -0.208 5.208 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.168 0.832 35 H 0.233 0.767 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.165 0.835 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -21.856 -3.620 -9.682 24.177 hybrid contribution 1.653 -0.126 0.990 1.930 sum -20.204 -3.746 -8.692 22.311 Atomic orbital electron populations 1.21841 0.94940 1.01756 1.01871 1.21071 0.95453 0.96285 0.98096 1.21862 1.01098 0.95856 1.01737 1.20701 0.87969 1.02096 0.99553 1.20902 0.96698 0.92800 0.88042 1.22133 0.92691 0.99509 1.00411 1.20469 0.94544 0.97538 0.94606 1.18121 0.82780 0.79964 0.85937 1.90758 1.73834 1.44307 1.32494 1.46304 1.05492 1.60098 1.24079 1.21841 0.92031 0.98430 0.87858 1.19341 0.87383 0.97823 0.98016 1.21024 0.91143 1.39589 1.04402 0.92177 1.25002 0.98162 0.95111 0.96017 1.69951 1.11092 1.43774 1.28384 0.86493 0.79711 0.79289 0.81960 1.20529 1.21136 1.19708 1.22368 1.02042 1.01126 0.92865 1.18923 0.86836 0.95101 0.85818 1.84811 1.81471 1.26769 1.35534 1.66753 1.12644 1.16301 1.25080 0.92618 0.92579 0.92607 0.89958 0.92691 0.92545 0.92986 0.89624 0.89743 0.83179 0.76676 0.92113 0.92106 0.95857 0.95821 0.92778 0.83502 0.74098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.19 37.15 0.34 -0.61 16 2 C -0.09 -0.74 2.84 -90.62 -0.26 -1.00 16 3 C -0.15 -1.30 9.01 37.16 0.33 -0.97 16 4 C -0.07 -0.54 5.08 -27.88 -0.14 -0.69 16 5 C 0.15 1.70 5.16 -82.65 -0.43 1.27 16 6 C -0.13 -1.55 9.27 -39.03 -0.36 -1.92 16 7 C -0.06 -0.83 5.91 -104.68 -0.62 -1.45 16 8 C 0.55 9.24 7.80 -12.18 -0.10 9.15 16 9 O -0.54 -10.70 16.44 5.36 0.09 -10.61 16 10 N -0.71 -12.11 5.51 -61.15 -0.34 -12.45 16 11 C 0.12 2.48 5.61 -4.04 -0.02 2.45 16 12 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C -0.16 -1.94 9.55 -38.84 -0.37 -2.31 16 22 C 0.31 3.69 7.74 -17.16 -0.13 3.56 16 23 O -0.48 -4.86 13.56 -18.75 -0.25 -5.11 16 24 N -0.49 -5.89 9.77 -9.60 -0.09 -5.99 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.79 7.79 -51.93 -0.40 0.39 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.05 0.55 7.38 -51.93 -0.38 0.17 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.60 7.86 -51.92 -0.41 0.19 16 34 H 0.15 1.75 7.62 -52.48 -0.40 1.35 16 35 H 0.40 5.87 6.61 -40.82 -0.27 5.60 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.15 1.54 6.53 -52.49 -0.34 1.20 16 42 H 0.40 2.04 9.06 45.56 0.41 2.46 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -32.51 356.58 -7.38 -39.88 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.56 Total: 3.20 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.30 Total: -5.38 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.31 Total: -43.44 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.17 Total: -15.73 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.51 -7.38 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345149985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.312 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds