Wall clock time and date at job start Tue Mar 31 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 C 1.52998 * 109.47352 * 120.00140 * 2 1 3 5 5 C 1.50699 * 109.47641 * 175.00033 * 4 2 1 6 6 C 1.38014 * 119.51820 * 125.00105 * 5 4 2 7 7 C 1.39925 * 119.13755 * 179.97438 * 6 5 4 8 8 C 1.48160 * 120.89219 * 180.02562 * 7 6 5 9 9 O 1.21506 * 120.00324 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99713 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99890 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46884 * 180.02562 * 11 10 8 13 13 C 1.50705 * 109.46829 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00349 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99888 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99793 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 119.99844 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47434 * 89.99860 * 17 15 13 19 19 H 1.48501 * 109.47109 * 209.99968 * 17 15 13 20 20 H 1.48498 * 109.47335 * 329.99797 * 17 15 13 21 21 C 1.39616 * 118.21189 * 359.97438 * 7 6 5 22 22 C 1.38849 * 118.95107 * 0.25462 * 21 7 6 23 23 O 1.35682 * 119.62290 * 179.74921 * 22 21 7 24 24 N 1.31883 * 119.50810 * 305.02150 * 5 4 2 25 25 H 1.09001 * 109.47191 * 300.00106 * 1 2 3 26 26 H 1.09001 * 109.46806 * 59.99260 * 1 2 3 27 27 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47191 * 239.99894 * 2 1 3 29 29 H 1.08994 * 109.47383 * 300.00183 * 3 2 1 30 30 H 1.09010 * 109.47096 * 60.00021 * 3 2 1 31 31 H 1.09003 * 109.47560 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47238 * 54.99562 * 4 2 1 33 33 H 1.09007 * 109.47348 * 295.00171 * 4 2 1 34 34 H 1.08008 * 120.43057 * 359.97438 * 6 5 4 35 35 H 0.96996 * 119.99900 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.46879 * 299.99490 * 11 10 8 37 37 H 1.08998 * 109.47364 * 59.99505 * 11 10 8 38 38 H 1.08997 * 109.47093 * 299.99719 * 12 11 10 39 39 H 1.09001 * 109.47399 * 60.00358 * 12 11 10 40 40 H 0.97003 * 119.99473 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.52082 * 179.97438 * 21 7 6 42 42 H 0.96702 * 114.00492 * 89.99722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1889 6 6 4.3012 -0.3422 2.2333 7 6 5.6950 -0.4473 2.1693 8 6 6.5476 0.0622 3.2687 9 8 6.0381 0.5801 4.2426 10 7 7.8884 -0.0488 3.1885 11 6 8.7314 0.4544 4.2758 12 6 10.2027 0.2069 3.9368 13 6 11.0699 0.7251 5.0551 14 1 10.6170 1.1854 5.9207 15 6 12.4416 0.6126 4.9725 16 7 12.9931 0.0525 3.9181 17 14 13.5165 1.2543 6.3589 18 1 13.7367 0.1750 7.3548 19 1 14.8237 1.6943 5.8086 20 1 12.8437 2.4039 7.0154 21 6 6.2607 -1.0461 1.0420 22 6 5.4239 -1.5056 0.0338 23 8 5.9593 -2.0851 -1.0700 24 7 4.1113 -1.3880 0.1386 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9564 0.8901 31 1 3.1301 1.4425 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1584 2.1370 34 1 3.8257 0.1143 3.0890 35 1 8.2952 -0.4619 2.4109 36 1 8.5628 1.5241 4.4010 37 1 8.4791 -0.0639 5.2009 38 1 10.3716 -0.8626 3.8113 39 1 10.4547 0.7256 3.0119 40 1 13.9582 -0.0269 3.8602 41 1 7.3324 -1.1462 0.9537 42 1 6.0730 -3.0425 -0.9958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345149985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:56 Heat of formation + Delta-G solvation = -94.178035 kcal Electronic energy + Delta-G solvation = -22443.001678 eV Core-core repulsion = 19000.335940 eV Total energy + Delta-G solvation = -3442.665738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98931 -40.47614 -38.53414 -36.84877 -36.70829 -34.95840 -33.84440 -31.97914 -31.42107 -28.08765 -27.91080 -27.24222 -25.21959 -23.90989 -22.94465 -21.84923 -20.78093 -19.86267 -18.62926 -18.22952 -17.88450 -16.83217 -16.80099 -16.52767 -16.48603 -16.29760 -15.84020 -15.54383 -15.08629 -14.92434 -14.62254 -14.30008 -13.87647 -13.55983 -13.33904 -13.21474 -13.03343 -12.96282 -12.76964 -12.60827 -12.54241 -12.29048 -11.94852 -11.79822 -11.76894 -11.56370 -11.49866 -11.27172 -11.03503 -10.62094 -10.52587 -10.14757 -9.90648 -8.25373 -6.35708 -0.48728 -0.14688 1.41839 1.42128 1.53459 1.67202 1.98302 2.40823 2.43778 2.63815 3.09801 3.32500 3.46036 3.82043 3.84026 3.99462 4.08177 4.10448 4.30622 4.39990 4.45040 4.48681 4.58650 4.76585 4.81158 4.81413 4.83243 4.94297 4.97459 5.04473 5.11110 5.14216 5.26883 5.38450 5.43761 5.46850 5.54854 5.54912 5.75905 6.13184 6.40344 6.55093 6.77178 6.79888 7.01164 7.33699 8.86432 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028943 B = 0.002691 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.188988 B =10402.887241 C =11063.061905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.066 4.066 5 C 0.158 3.842 6 C -0.130 4.130 7 C -0.073 4.073 8 C 0.551 3.449 9 O -0.569 6.569 10 N -0.706 5.706 11 C 0.139 3.861 12 C 0.021 3.979 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.161 4.161 22 C 0.313 3.687 23 O -0.485 6.485 24 N -0.496 5.496 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.154 0.846 35 H 0.410 0.590 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.011 0.989 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.159 0.841 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.384 -4.445 -9.496 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.205 4.205 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.151 4.151 7 C -0.084 4.084 8 C 0.338 3.662 9 O -0.450 6.450 10 N -0.356 5.356 11 C 0.016 3.984 12 C -0.016 4.016 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.192 4.192 16 N -0.565 5.565 17 Si 0.789 3.211 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.190 1.190 21 C -0.183 4.183 22 C 0.134 3.866 23 O -0.295 6.295 24 N -0.216 5.216 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.172 0.828 35 H 0.247 0.753 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.177 0.823 42 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -22.980 -3.900 -9.790 25.281 hybrid contribution 1.956 -0.089 0.925 2.165 sum -21.024 -3.989 -8.865 23.163 Atomic orbital electron populations 1.21803 0.93296 1.02456 1.02426 1.21021 0.96738 0.95474 0.97297 1.21864 0.99580 0.96635 1.02413 1.20837 0.85982 1.03205 1.00292 1.21290 0.97952 0.91539 0.87149 1.22252 0.92207 0.99625 1.01018 1.20188 0.94683 0.99235 0.94270 1.18508 0.82503 0.78965 0.86210 1.90733 1.74333 1.45828 1.34081 1.46084 1.05612 1.60241 1.23710 1.21354 0.90489 0.97936 0.88631 1.19153 0.89300 0.96518 0.96650 1.21453 0.92067 1.39736 1.05211 0.92128 1.25870 0.99598 0.95267 0.98474 1.70054 1.11558 1.44773 1.30158 0.85444 0.77789 0.78899 0.78923 1.19744 1.20636 1.19042 1.22437 1.02740 1.00704 0.92408 1.19002 0.86801 0.94855 0.85904 1.84765 1.81255 1.28762 1.34736 1.66863 1.12816 1.16528 1.25403 0.91786 0.92333 0.91854 0.91512 0.92232 0.91716 0.95235 0.88249 0.88201 0.82803 0.75284 0.92951 0.92730 0.97083 0.97255 0.92536 0.82329 0.71542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 71.98 0.66 -0.85 16 2 C -0.09 -1.28 2.84 -10.80 -0.03 -1.31 16 3 C -0.15 -2.43 9.01 71.98 0.65 -1.78 16 4 C -0.07 -0.96 5.08 29.85 0.15 -0.81 16 5 C 0.16 3.30 5.16 42.50 0.22 3.52 16 6 C -0.13 -3.09 9.27 22.63 0.21 -2.88 16 7 C -0.07 -1.96 5.91 -19.90 -0.12 -2.08 16 8 C 0.55 18.62 7.80 86.88 0.68 19.30 16 9 O -0.57 -22.91 16.44 -3.73 -0.06 -22.97 16 10 N -0.71 -24.16 5.51 -465.67 -2.57 -26.73 16 11 C 0.14 5.81 5.61 86.38 0.48 6.29 16 12 C 0.02 1.05 5.09 29.85 0.15 1.20 16 13 C -0.55 -29.97 9.11 25.60 0.23 -29.74 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 15 C 0.01 0.38 5.46 84.66 0.46 0.84 16 16 N -0.93 -53.65 13.29 21.45 0.28 -53.36 16 17 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 C -0.16 -3.71 9.55 22.75 0.22 -3.50 16 22 C 0.31 7.00 7.74 84.78 0.66 7.66 16 23 O -0.48 -9.03 13.56 -90.00 -1.22 -10.25 16 24 N -0.50 -11.32 9.77 -297.17 -2.90 -14.23 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 1.21 7.79 -2.39 -0.02 1.19 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.03 0.61 7.38 -2.39 -0.02 0.59 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.17 7.86 -2.38 -0.02 1.16 16 34 H 0.15 3.48 7.62 -2.91 -0.02 3.46 16 35 H 0.41 12.04 6.61 -92.71 -0.61 11.42 16 36 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.16 3.16 6.53 -2.91 -0.02 3.14 16 42 H 0.42 3.49 9.06 -74.06 -0.67 2.81 16 Total: -1.00 -68.90 356.58 -0.06 -68.96 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.25 Total: 17.59 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 4.63 Total: -4.14 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -5.19 Total: -94.32 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.28 Total: -33.22 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -68.90 -0.06 -68.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345149985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.215 kcal (2) G-P(sol) polarization free energy of solvation -68.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds