Wall clock time and date at job start Tue Mar 31 2020 07:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47113 * 2 1 4 4 C 1.52996 * 109.47258 * 239.99787 * 2 1 3 5 5 C 1.50703 * 109.47006 * 60.00149 * 4 2 1 6 6 H 1.08002 * 119.99971 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00059 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99971 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99948 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46976 * 90.00399 * 9 7 5 11 11 H 1.48503 * 109.47229 * 209.99768 * 9 7 5 12 12 H 1.48495 * 109.47491 * 330.00510 * 9 7 5 13 13 C 1.53002 * 109.46941 * 120.00287 * 2 1 3 14 14 N 1.46506 * 109.47041 * 299.99637 * 13 2 1 15 15 C 1.34773 * 119.99968 * 179.97438 * 14 13 2 16 16 O 1.21610 * 120.00228 * 359.73130 * 15 14 13 17 17 C 1.47426 * 119.99872 * 180.02562 * 15 14 13 18 18 N 1.36064 * 126.44821 * 359.41438 * 17 15 14 19 19 C 1.29931 * 108.47762 * 179.82217 * 18 17 15 20 20 O 1.34051 * 109.24097 * 0.44904 * 19 18 17 21 21 C 1.34253 * 108.22744 * 359.71710 * 20 19 18 22 22 C 1.50702 * 126.52366 * 180.02562 * 21 20 19 23 23 C 1.52995 * 117.50099 * 8.74914 * 22 21 20 24 24 C 1.52999 * 117.50065 * 300.08662 * 22 21 20 25 25 H 1.08992 * 109.47188 * 299.99909 * 1 2 3 26 26 H 1.08994 * 109.46777 * 60.00451 * 1 2 3 27 27 H 1.09001 * 109.46477 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47246 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47264 * 300.00066 * 3 2 1 30 30 H 1.09002 * 109.47025 * 59.99982 * 3 2 1 31 31 H 1.08994 * 109.47627 * 179.97438 * 4 2 1 32 32 H 1.09005 * 109.47648 * 300.00414 * 4 2 1 33 33 H 0.96993 * 119.99685 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47178 * 180.02562 * 13 2 1 35 35 H 1.08993 * 109.47411 * 59.99990 * 13 2 1 36 36 H 0.96998 * 119.99507 * 0.02562 * 14 13 2 37 37 H 1.08007 * 125.37840 * 180.16209 * 19 18 17 38 38 H 1.09005 * 115.54578 * 154.42053 * 22 21 20 39 39 H 1.09006 * 117.49694 * 359.97438 * 23 22 21 40 40 H 1.08999 * 117.49998 * 145.01804 * 23 22 21 41 41 H 1.09000 * 117.50012 * 214.98129 * 24 22 21 42 42 H 1.08999 * 117.49441 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 1.4317 0.1375 -4.8058 9 14 2.9444 -2.0010 -3.9033 10 1 2.0857 -3.2119 -3.9482 11 1 3.7358 -1.9088 -5.1564 12 1 3.8651 -2.0899 -2.7416 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4455 15 6 1.8768 -0.4915 3.6695 16 8 2.5715 -1.4834 3.7811 17 6 1.3850 0.2032 4.8732 18 7 0.6088 1.3203 4.9014 19 6 0.3788 1.6309 6.1419 20 8 0.9952 0.7476 6.9400 21 6 1.6268 -0.1488 6.1654 22 6 2.4469 -1.3218 6.6371 23 6 2.4177 -1.6490 8.1313 24 6 3.6689 -1.0247 7.5085 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.1300 -0.7209 -1.2495 32 1 1.6767 -1.7490 -1.2493 33 1 1.6660 -0.1940 -5.6867 34 1 3.1301 -0.7210 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9938 0.7578 2.3564 37 1 -0.2115 2.4709 6.4772 38 1 2.5168 -2.1571 5.9402 39 1 1.8056 -1.0155 8.7734 40 1 2.4687 -2.6995 8.4176 41 1 4.5426 -1.6647 7.3853 42 1 3.8798 0.0193 7.7402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354979435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:49 Heat of formation + Delta-G solvation = -1.934911 kcal Electronic energy + Delta-G solvation = -23200.580310 eV Core-core repulsion = 19761.914534 eV Total energy + Delta-G solvation = -3438.665776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.69509 -39.51846 -37.59320 -37.13075 -35.02990 -33.57289 -32.05229 -30.55181 -27.86345 -26.65989 -26.50689 -24.33488 -23.85749 -22.78795 -22.29281 -21.01208 -20.40352 -18.76460 -17.67134 -17.07418 -16.85012 -16.61237 -15.89529 -15.60584 -15.10743 -15.04135 -14.17987 -14.00793 -13.69252 -13.59607 -13.38605 -12.71111 -12.61506 -12.35077 -12.24414 -11.96905 -11.59579 -11.36960 -11.23722 -11.20068 -11.07507 -10.98104 -10.78682 -10.58741 -10.46082 -10.09041 -9.94046 -9.72685 -9.46432 -9.08992 -8.97063 -8.73108 -8.51482 -6.02140 -3.99231 0.84827 1.87325 2.23805 3.23878 3.27954 3.33047 3.40969 3.45036 3.52027 3.84065 4.06891 4.44858 4.47501 4.54612 4.79486 4.83780 5.22710 5.27887 5.30529 5.33838 5.40689 5.52188 5.55278 5.68541 5.69720 5.80097 5.88375 6.15348 6.15645 6.20689 6.37064 6.50214 6.64056 6.71257 6.93354 7.05336 7.08569 7.18662 7.22627 7.39119 7.70362 7.81826 8.29101 8.55537 9.02342 9.60524 11.10686 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.003221 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.342720 B = 8692.164710 C = 9396.349417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.002 4.002 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.701 5.701 15 C 0.595 3.405 16 O -0.540 6.540 17 C -0.064 4.064 18 N -0.460 5.460 19 C 0.173 3.827 20 O -0.201 6.201 21 C 0.069 3.931 22 C -0.083 4.083 23 C -0.170 4.170 24 C -0.157 4.157 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.409 0.591 37 H 0.256 0.744 38 H 0.157 0.843 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 0.951 26.278 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.063 4.063 3 C -0.187 4.187 4 C -0.039 4.039 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.352 5.352 15 C 0.380 3.620 16 O -0.419 6.419 17 C -0.184 4.184 18 N -0.189 5.189 19 C -0.055 4.055 20 O -0.087 6.087 21 C 0.013 3.987 22 C -0.101 4.101 23 C -0.207 4.207 24 C -0.194 4.194 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.245 0.755 37 H 0.271 0.729 38 H 0.174 0.826 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.014 0.580 25.606 25.612 hybrid contribution 0.325 -0.511 0.205 0.639 sum 0.339 0.069 25.810 25.812 Atomic orbital electron populations 1.21784 0.94730 1.01258 1.00940 1.20693 0.95919 0.95967 0.93740 1.21779 1.00394 0.95575 1.00936 1.19592 0.96285 0.95485 0.92582 1.21090 1.31781 1.13317 0.88605 0.90363 1.25000 0.95726 0.96762 0.95978 1.69905 1.45983 1.40607 0.97868 0.86855 0.81333 0.83927 0.77631 1.20383 1.21530 1.18980 1.21727 0.99022 0.96100 0.82952 1.45985 1.52222 1.31909 1.05045 1.16710 0.80106 0.83259 0.81898 1.90763 1.38940 1.25784 1.86378 1.21535 1.05324 0.97275 0.94284 1.70773 1.14250 1.12226 1.21652 1.28011 0.98528 0.95652 0.83351 1.84317 1.51558 1.33109 1.39740 1.22606 0.95865 0.91735 0.88524 1.20791 0.99003 0.94867 0.95479 1.23108 1.01247 1.02698 0.93632 1.23089 0.92213 1.02616 1.01509 0.94832 0.90830 0.93425 0.93425 0.90826 0.94835 0.96331 0.96779 0.92819 0.91536 0.91534 0.75454 0.72867 0.82575 0.88150 0.87472 0.87220 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 2 C -0.06 -1.19 0.54 -154.51 -0.08 -1.27 16 3 C -0.13 -2.35 8.05 37.15 0.30 -2.05 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.78 8.20 -34.44 -0.28 -14.06 16 6 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 9 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.12 2.16 4.56 -4.04 -0.02 2.15 16 14 N -0.70 -11.03 4.96 -61.38 -0.30 -11.33 16 15 C 0.60 9.55 7.81 -12.52 -0.10 9.45 16 16 O -0.54 -9.64 14.88 5.27 0.08 -9.56 16 17 C -0.06 -0.89 6.99 -83.02 -0.58 -1.47 16 18 N -0.46 -5.65 11.06 -11.48 -0.13 -5.78 16 19 C 0.17 1.47 13.19 51.96 0.69 2.16 16 20 O -0.20 -1.97 10.50 6.52 0.07 -1.90 16 21 C 0.07 0.82 6.90 -35.08 -0.24 0.58 16 22 C -0.08 -0.86 5.61 -91.77 -0.51 -1.37 16 23 C -0.17 -1.25 10.18 -26.70 -0.27 -1.52 16 24 C -0.16 -1.26 10.24 -26.69 -0.27 -1.54 16 25 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 26 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 30 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 31 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 32 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.41 6.07 5.89 -40.82 -0.24 5.83 16 37 H 0.26 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.16 1.82 6.66 -51.93 -0.35 1.47 16 39 H 0.10 0.70 8.01 -51.93 -0.42 0.28 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -32.36 344.04 -6.29 -38.65 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.03 Total: 3.78 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.26 Total: -9.34 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.34 Total: -43.76 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.15 Total: -11.46 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.36 -6.29 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354979435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.714 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds