Wall clock time and date at job start Tue Mar 31 2020 07:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47113 * 2 1 4 4 C 1.52996 * 109.47258 * 239.99787 * 2 1 3 5 5 C 1.50703 * 109.47006 * 60.00149 * 4 2 1 6 6 H 1.08002 * 119.99971 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00059 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99971 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99948 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46976 * 90.00399 * 9 7 5 11 11 H 1.48503 * 109.47229 * 209.99768 * 9 7 5 12 12 H 1.48495 * 109.47491 * 330.00510 * 9 7 5 13 13 C 1.53002 * 109.46941 * 120.00287 * 2 1 3 14 14 N 1.46506 * 109.47041 * 299.99637 * 13 2 1 15 15 C 1.34773 * 119.99968 * 179.97438 * 14 13 2 16 16 O 1.21610 * 120.00228 * 359.73130 * 15 14 13 17 17 C 1.47426 * 119.99872 * 180.02562 * 15 14 13 18 18 N 1.36064 * 126.44821 * 359.41438 * 17 15 14 19 19 C 1.29931 * 108.47762 * 179.82217 * 18 17 15 20 20 O 1.34051 * 109.24097 * 0.44904 * 19 18 17 21 21 C 1.34253 * 108.22744 * 359.71710 * 20 19 18 22 22 C 1.50702 * 126.52366 * 180.02562 * 21 20 19 23 23 C 1.52995 * 117.50099 * 8.74914 * 22 21 20 24 24 C 1.52999 * 117.50065 * 300.08662 * 22 21 20 25 25 H 1.08992 * 109.47188 * 299.99909 * 1 2 3 26 26 H 1.08994 * 109.46777 * 60.00451 * 1 2 3 27 27 H 1.09001 * 109.46477 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47246 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47264 * 300.00066 * 3 2 1 30 30 H 1.09002 * 109.47025 * 59.99982 * 3 2 1 31 31 H 1.08994 * 109.47627 * 179.97438 * 4 2 1 32 32 H 1.09005 * 109.47648 * 300.00414 * 4 2 1 33 33 H 0.96993 * 119.99685 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47178 * 180.02562 * 13 2 1 35 35 H 1.08993 * 109.47411 * 59.99990 * 13 2 1 36 36 H 0.96998 * 119.99507 * 0.02562 * 14 13 2 37 37 H 1.08007 * 125.37840 * 180.16209 * 19 18 17 38 38 H 1.09005 * 115.54578 * 154.42053 * 22 21 20 39 39 H 1.09006 * 117.49694 * 359.97438 * 23 22 21 40 40 H 1.08999 * 117.49998 * 145.01804 * 23 22 21 41 41 H 1.09000 * 117.50012 * 214.98129 * 24 22 21 42 42 H 1.08999 * 117.49441 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 1.4317 0.1375 -4.8058 9 14 2.9444 -2.0010 -3.9033 10 1 2.0857 -3.2119 -3.9482 11 1 3.7358 -1.9088 -5.1564 12 1 3.8651 -2.0899 -2.7416 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4455 15 6 1.8768 -0.4915 3.6695 16 8 2.5715 -1.4834 3.7811 17 6 1.3850 0.2032 4.8732 18 7 0.6088 1.3203 4.9014 19 6 0.3788 1.6309 6.1419 20 8 0.9952 0.7476 6.9400 21 6 1.6268 -0.1488 6.1654 22 6 2.4469 -1.3218 6.6371 23 6 2.4177 -1.6490 8.1313 24 6 3.6689 -1.0247 7.5085 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.1300 -0.7209 -1.2495 32 1 1.6767 -1.7490 -1.2493 33 1 1.6660 -0.1940 -5.6867 34 1 3.1301 -0.7210 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9938 0.7578 2.3564 37 1 -0.2115 2.4709 6.4772 38 1 2.5168 -2.1571 5.9402 39 1 1.8056 -1.0155 8.7734 40 1 2.4687 -2.6995 8.4176 41 1 4.5426 -1.6647 7.3853 42 1 3.8798 0.0193 7.7402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354979435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:48 Heat of formation + Delta-G solvation = -24.892770 kcal Electronic energy + Delta-G solvation = -23201.575837 eV Core-core repulsion = 19761.914534 eV Total energy + Delta-G solvation = -3439.661303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.49250 -40.79881 -38.75481 -38.14825 -35.89768 -35.17771 -33.95148 -31.40140 -29.77353 -28.02591 -28.00919 -25.51638 -24.66691 -23.99866 -23.33354 -21.93000 -21.47642 -20.04607 -18.99339 -18.84193 -17.88497 -17.52503 -16.99691 -16.49633 -16.34842 -16.19750 -15.81944 -15.34539 -15.19133 -14.90259 -14.60071 -14.21559 -14.19104 -13.92130 -13.36212 -12.95424 -12.85093 -12.66423 -12.51961 -12.43028 -12.31794 -12.18718 -12.07641 -11.97459 -11.78164 -11.63785 -11.53705 -11.29687 -11.03932 -10.92059 -10.70161 -10.20010 -9.76054 -8.21973 -6.22425 -0.02891 1.04561 1.36890 1.39245 1.47181 1.49735 2.12555 2.18953 2.39800 2.82553 3.10335 3.13371 3.32402 3.70964 3.82896 3.92526 3.95553 4.02565 4.11790 4.14218 4.43474 4.61198 4.62901 4.67803 4.68884 4.73206 4.91686 4.91817 4.97957 5.06554 5.08504 5.15351 5.17408 5.27400 5.32468 5.38736 5.41678 5.52993 5.65495 5.75148 6.28791 6.38505 6.59104 6.84306 7.07940 7.40225 8.93795 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.003221 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.342720 B = 8692.164710 C = 9396.349417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 C -0.123 4.123 4 C -0.001 4.001 5 C -0.503 4.503 6 H 0.051 0.949 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.936 3.064 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 C 0.137 3.863 14 N -0.697 5.697 15 C 0.593 3.407 16 O -0.565 6.565 17 C -0.098 4.098 18 N -0.494 5.494 19 C 0.199 3.801 20 O -0.196 6.196 21 C 0.076 3.924 22 C -0.114 4.114 23 C -0.147 4.147 24 C -0.151 4.151 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.263 0.737 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.413 0.587 37 H 0.307 0.693 38 H 0.137 0.863 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 0.793 29.472 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.058 4.058 3 C -0.181 4.181 4 C -0.039 4.039 5 C -0.541 4.541 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.761 3.239 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.174 1.174 13 C 0.014 3.986 14 N -0.348 5.348 15 C 0.380 3.620 16 O -0.446 6.446 17 C -0.216 4.216 18 N -0.222 5.222 19 C -0.030 4.030 20 O -0.082 6.082 21 C 0.019 3.981 22 C -0.132 4.132 23 C -0.184 4.184 24 C -0.188 4.188 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.251 0.749 37 H 0.322 0.678 38 H 0.154 0.846 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.190 0.428 28.813 28.816 hybrid contribution 0.196 -0.362 -0.682 0.797 sum 0.386 0.067 28.130 28.133 Atomic orbital electron populations 1.21696 0.94109 1.01285 1.00986 1.20558 0.96372 0.96076 0.92829 1.21692 1.00324 0.95052 1.00987 1.19552 0.96086 0.95519 0.92781 1.21365 1.30330 1.12287 0.90145 0.93129 1.25847 0.97452 0.99999 0.95803 1.70047 1.48143 1.42736 0.98454 0.85869 0.79840 0.80242 0.77969 1.19640 1.21461 1.17391 1.21414 0.98637 0.95741 0.82841 1.45837 1.52416 1.31975 1.04612 1.17023 0.79539 0.82987 0.82458 1.90741 1.40060 1.26924 1.86843 1.21256 1.07610 0.98782 0.93951 1.70729 1.15440 1.12353 1.23708 1.29206 0.96362 0.95214 0.82192 1.84358 1.51428 1.33001 1.39445 1.22783 0.95212 0.91919 0.88168 1.20765 1.01077 0.94428 0.96950 1.23220 1.00198 1.03817 0.91152 1.23193 0.92278 1.03168 1.00195 0.92115 0.93381 0.93405 0.93444 0.93367 0.92118 0.96416 0.96563 0.92844 0.91979 0.91895 0.74895 0.67787 0.84560 0.87286 0.85852 0.86325 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 8.05 71.98 0.58 -3.85 16 2 C -0.06 -2.17 0.54 -52.18 -0.03 -2.19 16 3 C -0.12 -4.43 8.05 71.98 0.58 -3.85 16 4 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 5 C -0.50 -27.75 8.20 25.60 0.21 -27.54 16 6 H 0.05 3.02 5.92 -2.91 -0.02 3.00 16 7 C 0.01 0.30 5.47 84.65 0.46 0.76 16 8 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 9 Si 0.94 44.67 27.47 68.60 1.88 46.56 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 13 C 0.14 4.65 4.56 86.38 0.39 5.05 16 14 N -0.70 -21.31 4.96 -466.36 -2.31 -23.62 16 15 C 0.59 18.79 7.81 86.66 0.68 19.46 16 16 O -0.57 -20.26 14.88 -4.06 -0.06 -20.32 16 17 C -0.10 -2.60 6.99 40.41 0.28 -2.32 16 18 N -0.49 -11.10 11.06 -305.15 -3.37 -14.47 16 19 C 0.20 2.70 13.19 130.52 1.72 4.42 16 20 O -0.20 -3.27 10.50 0.41 0.00 -3.27 16 21 C 0.08 1.70 6.90 25.19 0.17 1.87 16 22 C -0.11 -2.22 5.61 -11.54 -0.06 -2.28 16 23 C -0.15 -1.79 10.18 30.62 0.31 -1.48 16 24 C -0.15 -2.14 10.24 30.62 0.31 -1.83 16 25 H 0.06 1.82 6.86 -2.39 -0.02 1.81 16 26 H 0.05 1.96 6.62 -2.39 -0.02 1.95 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 30 H 0.06 1.82 6.86 -2.39 -0.02 1.81 16 31 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 32 H 0.02 0.73 7.57 -2.38 -0.02 0.72 16 33 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.41 11.71 5.89 -92.71 -0.55 11.16 16 37 H 0.31 0.25 8.06 -2.91 -0.02 0.23 16 38 H 0.14 3.21 6.66 -2.38 -0.02 3.19 16 39 H 0.11 1.16 8.01 -2.38 -0.02 1.14 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -71.97 344.04 2.59 -69.38 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.44 Total: 18.51 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 5.71 Total: -13.76 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -5.39 Total: -97.11 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -71.97 2.59 -69.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354979435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.492 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds