Wall clock time and date at job start Tue Mar 31 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 120.00098 * 2 1 4 4 N 1.46502 * 109.46864 * 125.00226 * 3 2 1 5 5 C 1.46494 * 120.00044 * 263.67172 * 4 3 2 6 6 C 1.50701 * 109.47599 * 270.00507 * 5 4 3 7 7 H 1.08000 * 119.99675 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00584 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99535 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00253 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.46930 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47102 * 120.00117 * 10 8 6 13 13 H 1.48504 * 109.47050 * 239.99992 * 10 8 6 14 14 C 1.34775 * 120.00200 * 83.67867 * 4 3 2 15 15 O 1.21677 * 120.00277 * 184.34852 * 14 4 3 16 16 C 1.46725 * 119.99671 * 4.34248 * 14 4 3 17 17 O 1.35338 * 126.64861 * 354.09164 * 16 14 4 18 18 C 1.33659 * 107.68551 * 180.15360 * 17 16 14 19 19 C 1.50710 * 125.42137 * 179.89773 * 18 17 16 20 20 C 1.53001 * 109.46989 * 269.71910 * 19 18 17 21 21 C 1.52998 * 109.46775 * 179.97438 * 20 19 18 22 22 N 1.30616 * 109.15736 * 359.63466 * 18 17 16 23 23 C 1.33691 * 108.99227 * 0.22678 * 22 18 17 24 24 C 1.50704 * 126.27318 * 180.02562 * 23 22 18 25 25 H 1.07999 * 120.00067 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00449 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00067 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47136 * 5.00532 * 3 2 1 29 29 H 1.09003 * 109.47410 * 245.00030 * 3 2 1 30 30 H 1.09002 * 109.47213 * 30.00596 * 5 4 3 31 31 H 1.08999 * 109.47640 * 149.99834 * 5 4 3 32 32 H 0.97002 * 119.99941 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.47055 * 29.72084 * 19 18 17 34 34 H 1.09003 * 109.46842 * 149.71930 * 19 18 17 35 35 H 1.08996 * 109.47364 * 299.99985 * 20 19 18 36 36 H 1.09004 * 109.46869 * 60.00017 * 20 19 18 37 37 H 1.09003 * 109.47186 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47668 * 299.99908 * 21 20 19 39 39 H 1.09004 * 109.47389 * 60.00359 * 21 20 19 40 40 H 1.09001 * 109.46570 * 89.97299 * 24 23 22 41 41 H 1.08999 * 109.46964 * 209.97337 * 24 23 22 42 42 H 1.09003 * 109.46846 * 329.97795 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.6072 1.9891 2.3822 6 6 3.0175 3.4385 2.3358 7 1 3.5167 3.8306 1.4621 8 6 2.7555 4.2639 3.4087 9 7 2.1471 3.7865 4.4725 10 14 3.2648 6.0602 3.3514 11 1 3.9278 6.3455 2.0537 12 1 2.0626 6.9204 3.4934 13 1 4.2094 6.3426 4.4620 14 6 4.2053 0.7517 1.0216 15 8 4.9468 0.7043 1.9851 16 6 4.6301 0.1774 -0.2600 17 8 3.8790 0.0555 -1.3793 18 6 4.6379 -0.5202 -2.3169 19 6 4.1954 -0.8457 -3.7203 20 6 3.6104 -2.2591 -3.7556 21 6 3.1606 -2.5893 -5.1802 22 7 5.8258 -0.7505 -1.8250 23 6 5.8595 -0.3329 -0.5555 24 6 7.0402 -0.4111 0.3778 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 1.5267 1.9213 2.5095 31 1 3.1030 1.4978 3.2193 32 1 1.9632 4.3671 5.2275 33 1 3.4366 -0.1304 -4.0371 34 1 5.0511 -0.7897 -4.3932 35 1 4.3692 -2.9744 -3.4388 36 1 2.7547 -2.3150 -3.0826 37 1 2.7443 -3.5964 -5.2055 38 1 2.4016 -1.8739 -5.4967 39 1 4.0160 -2.5332 -5.8535 40 1 7.6345 0.4983 0.2888 41 1 6.6862 -0.5149 1.4035 42 1 7.6537 -1.2732 0.1161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359433377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:38 Heat of formation + Delta-G solvation = -3.284484 kcal Electronic energy + Delta-G solvation = -23825.262521 eV Core-core repulsion = 20386.538223 eV Total energy + Delta-G solvation = -3438.724297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.28218 -38.97174 -36.10364 -35.55965 -34.82549 -33.29396 -32.13874 -31.42961 -28.50040 -28.17341 -26.71540 -25.39755 -23.34791 -22.47568 -21.36666 -21.02868 -20.08683 -19.20806 -17.05378 -16.72503 -16.47022 -15.95102 -15.67594 -15.26455 -14.72865 -14.44378 -14.34957 -14.19223 -13.58859 -13.18204 -13.11974 -12.91811 -12.63592 -12.50538 -12.26448 -12.15577 -11.81067 -11.69355 -11.63488 -11.37572 -11.08997 -11.05401 -10.92170 -10.79119 -10.70585 -10.52632 -10.24742 -9.70189 -9.34757 -9.18611 -8.60607 -8.49001 -7.81025 -6.10058 -4.15589 1.10829 2.42631 2.57202 2.60727 3.27003 3.34712 3.38645 3.63061 3.78296 4.02307 4.40505 4.64241 4.66264 4.82603 4.94048 5.01692 5.20595 5.23884 5.25053 5.32320 5.38953 5.44526 5.51590 5.68736 5.74691 5.75686 5.85012 5.88195 5.95716 6.01216 6.06107 6.11318 6.28277 6.53362 6.78622 6.85637 6.98737 7.32764 7.41145 7.73473 7.85880 8.14162 8.20059 8.70351 8.91324 9.49730 10.98010 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.004479 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.890199 B = 6249.469707 C = 7011.021988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C 0.132 3.868 4 N -0.578 5.578 5 C 0.246 3.754 6 C -0.531 4.531 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.594 3.406 15 O -0.513 6.513 16 C -0.095 4.095 17 O -0.177 6.177 18 C 0.196 3.804 19 C -0.023 4.023 20 C -0.122 4.122 21 C -0.150 4.150 22 N -0.487 5.487 23 C 0.061 3.939 24 C -0.079 4.079 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 -10.747 -16.876 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.177 4.177 3 C 0.008 3.992 4 N -0.307 5.307 5 C 0.128 3.872 6 C -0.570 4.570 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.379 3.621 15 O -0.392 6.392 16 C -0.150 4.150 17 O -0.064 6.064 18 C -0.010 4.010 19 C -0.061 4.061 20 C -0.160 4.160 21 C -0.208 4.208 22 N -0.217 5.217 23 C -0.063 4.063 24 C -0.136 4.136 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.897 -10.930 -16.489 19.803 hybrid contribution -0.390 1.324 0.332 1.419 sum 0.507 -9.606 -16.157 18.804 Atomic orbital electron populations 1.23787 0.95676 1.01749 1.01067 1.23326 0.96231 0.98730 0.99424 1.20800 0.93000 0.95551 0.89818 1.48190 1.13077 1.53015 1.16448 1.19424 0.96249 0.92029 0.79507 1.21451 1.39016 0.94098 1.02396 0.92289 1.24927 0.94940 0.99024 0.95048 1.69944 1.41367 1.36043 1.05712 0.86423 0.78300 0.84404 0.78206 1.19770 1.20887 1.20767 1.16461 0.82828 0.78936 0.83861 1.90814 1.53269 1.59050 1.36019 1.23525 0.92486 1.10763 0.88228 1.84727 1.41224 1.60704 1.19741 1.26436 0.85693 0.94823 0.94060 1.20196 1.02642 0.98561 0.84739 1.21534 1.01301 0.94828 0.98344 1.21748 1.01480 1.01808 0.95737 1.70252 1.20198 1.22217 1.09003 1.21977 0.95467 0.97290 0.91526 1.20356 0.92790 1.02599 0.97818 0.88241 0.88744 0.88147 0.88977 0.89825 0.94465 0.93353 0.92652 0.88733 0.87712 0.91054 0.91267 0.92227 0.92313 0.92361 0.90372 0.88380 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 14.32 29.02 0.42 -2.05 16 2 C -0.16 -2.41 9.04 -36.02 -0.33 -2.74 16 3 C 0.13 2.31 5.45 -5.19 -0.03 2.29 16 4 N -0.58 -12.67 2.46 -177.97 -0.44 -13.11 16 5 C 0.25 6.41 5.16 -5.20 -0.03 6.38 16 6 C -0.53 -14.90 9.39 -34.44 -0.32 -15.23 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 10 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.59 13.07 7.58 -12.83 -0.10 12.97 16 15 O -0.51 -12.68 14.32 5.21 0.07 -12.61 16 16 C -0.09 -1.77 6.78 -36.84 -0.25 -2.02 16 17 O -0.18 -2.81 6.78 4.45 0.03 -2.78 16 18 C 0.20 2.71 7.57 -12.79 -0.10 2.61 16 19 C -0.02 -0.21 5.84 -27.88 -0.16 -0.37 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 21 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 22 N -0.49 -7.74 11.26 -7.07 -0.08 -7.82 16 23 C 0.06 1.07 7.16 -82.46 -0.59 0.47 16 24 C -0.08 -1.21 9.94 36.01 0.36 -0.86 16 25 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 26 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 27 H 0.10 1.55 7.94 -52.49 -0.42 1.13 16 28 H 0.09 1.62 7.68 -51.93 -0.40 1.22 16 29 H 0.08 1.39 5.36 -51.93 -0.28 1.11 16 30 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.05 1.40 7.36 -51.93 -0.38 1.02 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.10 1.66 6.36 -51.93 -0.33 1.33 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -32.14 356.55 -6.75 -38.89 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.41 Total: -0.68 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.01 Total: 1.51 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.22 Total: -46.33 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.10 Total: -15.39 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.14 -6.75 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359433377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.602 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds