Wall clock time and date at job start Tue Mar 31 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 120.00098 * 2 1 4 4 N 1.46502 * 109.46864 * 125.00226 * 3 2 1 5 5 C 1.46494 * 120.00044 * 263.67172 * 4 3 2 6 6 C 1.50701 * 109.47599 * 270.00507 * 5 4 3 7 7 H 1.08000 * 119.99675 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00584 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99535 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00253 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.46930 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47102 * 120.00117 * 10 8 6 13 13 H 1.48504 * 109.47050 * 239.99992 * 10 8 6 14 14 C 1.34775 * 120.00200 * 83.67867 * 4 3 2 15 15 O 1.21677 * 120.00277 * 184.34852 * 14 4 3 16 16 C 1.46725 * 119.99671 * 4.34248 * 14 4 3 17 17 O 1.35338 * 126.64861 * 354.09164 * 16 14 4 18 18 C 1.33659 * 107.68551 * 180.15360 * 17 16 14 19 19 C 1.50710 * 125.42137 * 179.89773 * 18 17 16 20 20 C 1.53001 * 109.46989 * 269.71910 * 19 18 17 21 21 C 1.52998 * 109.46775 * 179.97438 * 20 19 18 22 22 N 1.30616 * 109.15736 * 359.63466 * 18 17 16 23 23 C 1.33691 * 108.99227 * 0.22678 * 22 18 17 24 24 C 1.50704 * 126.27318 * 180.02562 * 23 22 18 25 25 H 1.07999 * 120.00067 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00449 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00067 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47136 * 5.00532 * 3 2 1 29 29 H 1.09003 * 109.47410 * 245.00030 * 3 2 1 30 30 H 1.09002 * 109.47213 * 30.00596 * 5 4 3 31 31 H 1.08999 * 109.47640 * 149.99834 * 5 4 3 32 32 H 0.97002 * 119.99941 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.47055 * 29.72084 * 19 18 17 34 34 H 1.09003 * 109.46842 * 149.71930 * 19 18 17 35 35 H 1.08996 * 109.47364 * 299.99985 * 20 19 18 36 36 H 1.09004 * 109.46869 * 60.00017 * 20 19 18 37 37 H 1.09003 * 109.47186 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47668 * 299.99908 * 21 20 19 39 39 H 1.09004 * 109.47389 * 60.00359 * 21 20 19 40 40 H 1.09001 * 109.46570 * 89.97299 * 24 23 22 41 41 H 1.08999 * 109.46964 * 209.97337 * 24 23 22 42 42 H 1.09003 * 109.46846 * 329.97795 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.6072 1.9891 2.3822 6 6 3.0175 3.4385 2.3358 7 1 3.5167 3.8306 1.4621 8 6 2.7555 4.2639 3.4087 9 7 2.1471 3.7865 4.4725 10 14 3.2648 6.0602 3.3514 11 1 3.9278 6.3455 2.0537 12 1 2.0626 6.9204 3.4934 13 1 4.2094 6.3426 4.4620 14 6 4.2053 0.7517 1.0216 15 8 4.9468 0.7043 1.9851 16 6 4.6301 0.1774 -0.2600 17 8 3.8790 0.0555 -1.3793 18 6 4.6379 -0.5202 -2.3169 19 6 4.1954 -0.8457 -3.7203 20 6 3.6104 -2.2591 -3.7556 21 6 3.1606 -2.5893 -5.1802 22 7 5.8258 -0.7505 -1.8250 23 6 5.8595 -0.3329 -0.5555 24 6 7.0402 -0.4111 0.3778 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 1.5267 1.9213 2.5095 31 1 3.1030 1.4978 3.2193 32 1 1.9632 4.3671 5.2275 33 1 3.4366 -0.1304 -4.0371 34 1 5.0511 -0.7897 -4.3932 35 1 4.3692 -2.9744 -3.4388 36 1 2.7547 -2.3150 -3.0826 37 1 2.7443 -3.5964 -5.2055 38 1 2.4016 -1.8739 -5.4967 39 1 4.0160 -2.5332 -5.8535 40 1 7.6345 0.4983 0.2888 41 1 6.6862 -0.5149 1.4035 42 1 7.6537 -1.2732 0.1161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359433377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:38 Heat of formation + Delta-G solvation = -23.985579 kcal Electronic energy + Delta-G solvation = -23826.160188 eV Core-core repulsion = 20386.538223 eV Total energy + Delta-G solvation = -3439.621964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.55630 -40.67010 -37.64659 -36.38317 -36.07419 -35.17662 -33.79470 -32.61064 -30.11834 -29.33337 -28.08349 -26.94714 -25.12739 -23.46106 -22.70954 -22.01900 -21.43009 -20.63671 -18.73733 -18.49819 -17.94755 -17.41299 -17.11521 -16.36396 -16.10971 -15.95027 -15.71650 -15.52395 -14.76765 -14.47114 -14.32673 -14.24186 -14.12817 -13.97801 -13.41384 -13.30821 -13.13361 -13.05713 -12.87857 -12.66345 -12.64268 -12.35148 -12.26224 -12.24367 -11.95456 -11.86147 -11.70417 -11.60630 -11.06157 -10.67703 -10.38098 -10.01518 -9.55039 -8.25806 -6.41029 -0.24897 1.22036 1.30248 1.33574 1.36581 1.38866 1.50812 2.00851 2.29254 2.40475 2.81918 3.04458 3.51066 3.63291 3.94031 4.01390 4.06176 4.08475 4.15269 4.33218 4.43584 4.52312 4.63905 4.65582 4.70660 4.74113 4.85552 4.92820 4.93369 4.96892 5.02327 5.14400 5.20688 5.26821 5.33116 5.41902 5.46588 5.63665 5.69241 5.84293 5.98982 6.36568 6.56405 6.65992 7.04155 7.30552 8.81905 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.004479 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.890199 B = 6249.469707 C = 7011.021988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.180 4.180 3 C 0.133 3.867 4 N -0.585 5.585 5 C 0.264 3.736 6 C -0.548 4.548 7 H 0.052 0.948 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.969 3.031 11 H -0.269 1.269 12 H -0.268 1.268 13 H -0.279 1.279 14 C 0.590 3.410 15 O -0.556 6.556 16 C -0.126 4.126 17 O -0.176 6.176 18 C 0.220 3.780 19 C -0.025 4.025 20 C -0.118 4.118 21 C -0.146 4.146 22 N -0.504 5.504 23 C 0.069 3.931 24 C -0.078 4.078 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.029 0.971 31 H 0.008 0.992 32 H 0.269 0.731 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 -10.726 -19.652 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.199 4.199 3 C 0.011 3.989 4 N -0.314 5.314 5 C 0.144 3.856 6 C -0.586 4.586 7 H 0.070 0.930 8 C -0.187 4.187 9 N -0.563 5.563 10 Si 0.793 3.207 11 H -0.193 1.193 12 H -0.193 1.193 13 H -0.205 1.205 14 C 0.377 3.623 15 O -0.438 6.438 16 C -0.181 4.181 17 O -0.064 6.064 18 C 0.015 3.985 19 C -0.062 4.062 20 C -0.156 4.156 21 C -0.203 4.203 22 N -0.233 5.233 23 C -0.055 4.055 24 C -0.135 4.135 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.026 0.974 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.370 -10.926 -19.307 22.187 hybrid contribution -0.276 1.212 1.079 1.646 sum 0.094 -9.713 -18.228 20.655 Atomic orbital electron populations 1.24051 0.94905 1.03256 0.97468 1.23095 0.96819 0.97306 1.02661 1.20949 0.92458 0.96925 0.88558 1.48149 1.14135 1.52762 1.16311 1.18878 0.94955 0.91288 0.80464 1.21670 1.39304 0.95163 1.02485 0.92956 1.25816 0.94675 1.03670 0.94490 1.70050 1.42054 1.37835 1.06365 0.85354 0.78349 0.78832 0.78194 1.19344 1.19270 1.20511 1.16790 0.82264 0.78412 0.84818 1.90771 1.54322 1.60763 1.37897 1.22730 0.93400 1.13809 0.88184 1.84696 1.41125 1.61233 1.19329 1.27633 0.84747 0.91262 0.94858 1.20626 1.04203 0.99719 0.81676 1.21505 1.00662 0.93715 0.99741 1.21720 1.02092 1.02283 0.94205 1.70344 1.21287 1.23458 1.08234 1.22311 0.95301 0.95582 0.92293 1.20379 0.92618 1.04028 0.96454 0.87656 0.86181 0.88441 0.89352 0.88806 0.95295 0.97436 0.92208 0.86396 0.85752 0.92022 0.91964 0.91854 0.91404 0.91462 0.89687 0.90345 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 14.32 67.79 0.97 -2.95 16 2 C -0.18 -5.39 9.04 25.66 0.23 -5.15 16 3 C 0.13 4.71 5.45 85.63 0.47 5.18 16 4 N -0.59 -26.74 2.46 -835.19 -2.05 -28.79 16 5 C 0.26 14.47 5.16 85.63 0.44 14.91 16 6 C -0.55 -31.71 9.39 25.60 0.24 -31.47 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.75 5.46 84.66 0.46 1.22 16 9 N -0.92 -55.27 13.29 21.45 0.28 -54.98 16 10 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 C 0.59 27.19 7.58 86.46 0.66 27.85 16 15 O -0.56 -29.25 14.32 -4.28 -0.06 -29.31 16 16 C -0.13 -4.78 6.78 24.05 0.16 -4.62 16 17 O -0.18 -5.45 6.78 -6.98 -0.05 -5.50 16 18 C 0.22 5.69 7.57 88.29 0.67 6.36 16 19 C -0.02 -0.36 5.84 29.85 0.17 -0.19 16 20 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 21 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 22 N -0.50 -15.30 11.26 -291.05 -3.28 -18.58 16 23 C 0.07 2.40 7.16 41.84 0.30 2.70 16 24 C -0.08 -2.42 9.94 71.24 0.71 -1.72 16 25 H 0.11 2.49 7.84 -2.91 -0.02 2.47 16 26 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 27 H 0.10 2.99 7.94 -2.91 -0.02 2.96 16 28 H 0.09 3.14 7.68 -2.39 -0.02 3.12 16 29 H 0.09 3.09 5.36 -2.39 -0.01 3.08 16 30 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 31 H 0.01 0.47 7.36 -2.39 -0.02 0.45 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.08 2.78 6.36 -2.39 -0.02 2.77 16 42 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -72.03 356.55 4.25 -67.78 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.00 Total: 12.47 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.38 Total: 10.21 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -5.04 Total: -102.35 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.11 Total: -34.80 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.03 4.25 -67.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359433377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.797 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds