Wall clock time and date at job start Tue Mar 31 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36953 * 119.70105 * 2 1 4 4 C 1.47889 * 119.75625 * 359.97438 * 3 2 1 5 5 O 1.21543 * 119.99893 * 354.07564 * 4 3 2 6 6 N 1.34768 * 119.99954 * 173.79938 * 4 3 2 7 7 C 1.46499 * 120.00278 * 179.97438 * 6 4 3 8 8 C 1.52993 * 109.47645 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47161 * 300.00365 * 8 7 6 10 10 C 1.52997 * 109.47271 * 60.00141 * 8 7 6 11 11 C 1.53000 * 109.47419 * 180.02562 * 8 7 6 12 12 C 1.50700 * 109.47249 * 179.97438 * 11 8 7 13 13 H 1.08002 * 120.00199 * 0.02562 * 12 11 8 14 14 C 1.37880 * 120.00039 * 179.97438 * 12 11 8 15 15 N 1.31515 * 119.99683 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99914 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47381 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46902 * 120.00281 * 16 14 12 19 19 H 1.48495 * 109.46976 * 239.99804 * 16 14 12 20 20 C 1.36290 * 120.48865 * 179.70223 * 3 2 1 21 21 C 1.40413 * 119.90660 * 0.27862 * 20 3 2 22 22 C 1.36108 * 119.41407 * 0.02562 * 21 20 3 23 23 C 1.34666 * 119.70609 * 180.26527 * 2 1 3 24 24 O 1.21961 * 119.95818 * 359.97438 * 23 2 1 25 25 H 1.09007 * 109.47626 * 64.74667 * 1 2 3 26 26 H 1.09000 * 109.47408 * 184.74918 * 1 2 3 27 27 H 1.08998 * 109.47666 * 304.74732 * 1 2 3 28 28 H 0.96999 * 120.00545 * 359.97438 * 6 4 3 29 29 H 1.08997 * 109.47405 * 300.00962 * 7 6 4 30 30 H 1.09003 * 109.46599 * 59.99998 * 7 6 4 31 31 H 1.09004 * 109.47142 * 59.99546 * 9 8 7 32 32 H 1.08996 * 109.47109 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.47215 * 299.99782 * 9 8 7 34 34 H 1.09006 * 109.46731 * 60.00105 * 10 8 7 35 35 H 1.08996 * 109.47320 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.47304 * 300.00623 * 10 8 7 37 37 H 1.08993 * 109.47275 * 299.99963 * 11 8 7 38 38 H 1.08998 * 109.47143 * 60.00103 * 11 8 7 39 39 H 0.96998 * 119.99705 * 179.97438 * 15 14 12 40 40 H 1.07999 * 120.05126 * 180.29707 * 20 3 2 41 41 H 1.07998 * 120.29174 * 180.02562 * 21 20 3 42 42 H 1.07999 * 120.24499 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1435 1.1896 0.0000 4 6 1.3919 2.4633 -0.0006 5 8 0.1815 2.4546 -0.1097 6 7 2.0488 3.6333 0.1255 7 6 1.3044 4.8951 0.1244 8 6 2.2802 6.0631 0.2798 9 6 3.0403 5.9206 1.6000 10 6 3.2736 6.0561 -0.8839 11 6 1.5027 7.3809 0.2792 12 6 2.4639 8.5313 0.4329 13 1 3.5234 8.3417 0.5217 14 6 1.9908 9.8262 0.4592 15 7 0.7006 10.0571 0.3506 16 14 3.1823 11.2522 0.6490 17 1 4.5684 10.7291 0.7500 18 1 3.0760 12.1465 -0.5318 19 1 2.8496 12.0148 1.8790 20 6 3.5063 1.2083 0.0061 21 6 4.2230 0.0009 0.0065 22 6 3.5447 -1.1791 0.0003 23 6 2.1323 -1.1697 -0.0054 24 8 1.5163 -2.2223 -0.0098 25 1 -0.3634 0.4384 -0.9295 26 1 -0.3634 -1.0241 0.0851 27 1 -0.3634 0.5857 0.8444 28 1 3.0144 3.6401 0.2170 29 1 0.7632 4.9969 -0.8163 30 1 0.5964 4.8999 0.9531 31 1 3.5942 4.9817 1.6008 32 1 3.7358 6.7525 1.7105 33 1 2.3327 5.9256 2.4290 34 1 2.7321 6.1577 -1.8244 35 1 3.9685 6.8885 -0.7734 36 1 3.8275 5.1173 -0.8831 37 1 0.9610 7.4827 -0.6611 38 1 0.7953 7.3857 1.1085 39 1 0.3677 10.9680 0.3695 40 1 4.0342 2.1505 0.0109 41 1 5.3030 0.0085 0.0118 42 1 4.0825 -2.1157 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359760998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:18 Heat of formation + Delta-G solvation = -45.390932 kcal Electronic energy + Delta-G solvation = -23373.766984 eV Core-core repulsion = 19933.216814 eV Total energy + Delta-G solvation = -3440.550170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77380 -39.72062 -37.47986 -36.87444 -34.96526 -33.82186 -32.30578 -30.53265 -27.81143 -27.24840 -26.64787 -26.54126 -24.82575 -23.07481 -22.71574 -20.96865 -19.00675 -17.79812 -17.50389 -17.16386 -16.50016 -16.40933 -15.95305 -15.39403 -15.16153 -14.89532 -14.57509 -14.05229 -13.85354 -13.30847 -13.22603 -12.93465 -12.90643 -12.72424 -12.37404 -12.34290 -12.15003 -11.96510 -11.30121 -11.11802 -10.91850 -10.75457 -10.54950 -10.44953 -10.39639 -10.34326 -10.01549 -9.97915 -9.31731 -9.07727 -9.02422 -8.43877 -8.32002 -6.07759 -4.09457 0.13858 1.35117 2.20469 2.65446 2.99369 3.24992 3.33691 3.35244 3.39229 4.19814 4.28781 4.38708 4.51794 4.84156 4.85885 5.27854 5.27975 5.30497 5.33015 5.45396 5.50513 5.58863 5.65143 5.70745 5.83176 6.00379 6.02954 6.05249 6.09866 6.22190 6.26059 6.50460 6.56000 6.72101 6.91619 6.95236 6.98710 7.30960 7.54228 7.64915 7.71486 7.89848 7.92137 8.31280 8.95412 9.54377 11.03664 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036770 B = 0.003051 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.317700 B = 9174.958235 C = 9730.041204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.476 5.476 3 C 0.126 3.874 4 C 0.546 3.454 5 O -0.524 6.524 6 N -0.699 5.699 7 C 0.127 3.873 8 C -0.073 4.073 9 C -0.129 4.129 10 C -0.129 4.129 11 C 0.036 3.964 12 C -0.513 4.513 13 H 0.060 0.940 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.188 4.188 21 C -0.025 4.025 22 C -0.221 4.221 23 C 0.512 3.488 24 O -0.551 6.551 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.402 0.598 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 -16.864 -0.434 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.187 5.187 3 C 0.014 3.986 4 C 0.330 3.670 5 O -0.402 6.402 6 N -0.351 5.351 7 C 0.005 3.995 8 C -0.074 4.074 9 C -0.186 4.186 10 C -0.186 4.186 11 C -0.001 4.001 12 C -0.551 4.551 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.213 4.213 21 C -0.046 4.046 22 C -0.244 4.244 23 C 0.313 3.687 24 O -0.433 6.433 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.240 0.760 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.888 -17.373 -0.515 18.351 hybrid contribution 1.107 1.038 0.123 1.523 sum 6.995 -16.335 -0.392 17.774 Atomic orbital electron populations 1.22342 0.75829 1.04420 1.05165 1.45432 1.10101 1.05142 1.58012 1.20294 0.92504 0.87011 0.98784 1.17857 0.87188 0.83302 0.78676 1.90840 1.13161 1.86985 1.49222 1.46102 1.11548 1.05767 1.71722 1.21816 0.94786 0.80500 1.02444 1.20942 0.95426 0.95771 0.95232 1.21788 1.00177 0.99849 0.96806 1.21786 0.99080 0.99936 0.97808 1.19093 0.94943 0.88488 0.97596 1.21196 0.93464 0.90644 1.49783 0.92145 1.25014 0.94971 0.99010 0.95468 1.69968 1.12369 1.20458 1.50485 0.86589 0.81313 0.82730 0.77674 1.19770 1.21111 1.21107 1.20930 0.91180 1.00259 1.08920 1.21412 1.01092 0.91359 0.90747 1.22380 0.92611 1.00335 1.09040 1.17344 0.89338 0.82544 0.79441 1.90935 1.69938 1.29097 1.53337 0.89476 0.88970 0.89266 0.76019 0.91096 0.91101 0.95283 0.91173 0.93196 0.93187 0.91168 0.95290 0.96254 0.96257 0.93020 0.83276 0.83853 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 8.93 59.84 0.53 1.29 16 2 N -0.48 -5.87 3.02 -122.80 -0.37 -6.24 16 3 C 0.13 1.39 6.63 -82.33 -0.55 0.84 16 4 C 0.55 7.02 7.69 -12.31 -0.09 6.93 16 5 O -0.52 -8.21 13.22 5.33 0.07 -8.14 16 6 N -0.70 -8.41 4.90 -61.24 -0.30 -8.71 16 7 C 0.13 1.93 4.56 -4.05 -0.02 1.91 16 8 C -0.07 -1.23 0.54 -154.51 -0.08 -1.32 16 9 C -0.13 -2.00 8.05 37.16 0.30 -1.70 16 10 C -0.13 -1.99 8.05 37.16 0.30 -1.69 16 11 C 0.04 0.83 4.04 -27.88 -0.11 0.71 16 12 C -0.51 -12.87 7.65 -34.44 -0.26 -13.13 16 13 H 0.06 1.45 5.68 -52.49 -0.30 1.16 16 14 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 15 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 16 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 C -0.19 -1.52 9.49 -39.46 -0.37 -1.89 16 21 C -0.02 -0.17 10.08 -39.53 -0.40 -0.57 16 22 C -0.22 -2.09 10.00 -39.20 -0.39 -2.48 16 23 C 0.51 6.67 7.43 -15.16 -0.11 6.56 16 24 O -0.55 -8.93 16.40 4.95 0.08 -8.85 16 25 H 0.09 1.05 7.37 -51.93 -0.38 0.67 16 26 H 0.09 1.09 6.88 -51.93 -0.36 0.74 16 27 H 0.09 1.08 7.08 -51.93 -0.37 0.71 16 28 H 0.40 3.87 4.17 -40.82 -0.17 3.70 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 32 H 0.07 1.20 6.62 -51.93 -0.34 0.85 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 36 H 0.03 0.34 6.86 -51.93 -0.36 -0.02 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.15 0.84 6.34 -52.49 -0.33 0.51 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -31.40 338.02 -6.90 -38.30 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.83 Total: 1.03 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.36 Total: -3.13 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.07 Total: -39.69 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.15 Total: -16.99 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.40 -6.90 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359760998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.093 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds