Wall clock time and date at job start Tue Mar 31 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36953 * 119.70105 * 2 1 4 4 C 1.47889 * 119.75625 * 359.97438 * 3 2 1 5 5 O 1.21543 * 119.99893 * 354.07564 * 4 3 2 6 6 N 1.34768 * 119.99954 * 173.79938 * 4 3 2 7 7 C 1.46499 * 120.00278 * 179.97438 * 6 4 3 8 8 C 1.52993 * 109.47645 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47161 * 300.00365 * 8 7 6 10 10 C 1.52997 * 109.47271 * 60.00141 * 8 7 6 11 11 C 1.53000 * 109.47419 * 180.02562 * 8 7 6 12 12 C 1.50700 * 109.47249 * 179.97438 * 11 8 7 13 13 H 1.08002 * 120.00199 * 0.02562 * 12 11 8 14 14 C 1.37880 * 120.00039 * 179.97438 * 12 11 8 15 15 N 1.31515 * 119.99683 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99914 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47381 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46902 * 120.00281 * 16 14 12 19 19 H 1.48495 * 109.46976 * 239.99804 * 16 14 12 20 20 C 1.36290 * 120.48865 * 179.70223 * 3 2 1 21 21 C 1.40413 * 119.90660 * 0.27862 * 20 3 2 22 22 C 1.36108 * 119.41407 * 0.02562 * 21 20 3 23 23 C 1.34666 * 119.70609 * 180.26527 * 2 1 3 24 24 O 1.21961 * 119.95818 * 359.97438 * 23 2 1 25 25 H 1.09007 * 109.47626 * 64.74667 * 1 2 3 26 26 H 1.09000 * 109.47408 * 184.74918 * 1 2 3 27 27 H 1.08998 * 109.47666 * 304.74732 * 1 2 3 28 28 H 0.96999 * 120.00545 * 359.97438 * 6 4 3 29 29 H 1.08997 * 109.47405 * 300.00962 * 7 6 4 30 30 H 1.09003 * 109.46599 * 59.99998 * 7 6 4 31 31 H 1.09004 * 109.47142 * 59.99546 * 9 8 7 32 32 H 1.08996 * 109.47109 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.47215 * 299.99782 * 9 8 7 34 34 H 1.09006 * 109.46731 * 60.00105 * 10 8 7 35 35 H 1.08996 * 109.47320 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.47304 * 300.00623 * 10 8 7 37 37 H 1.08993 * 109.47275 * 299.99963 * 11 8 7 38 38 H 1.08998 * 109.47143 * 60.00103 * 11 8 7 39 39 H 0.96998 * 119.99705 * 179.97438 * 15 14 12 40 40 H 1.07999 * 120.05126 * 180.29707 * 20 3 2 41 41 H 1.07998 * 120.29174 * 180.02562 * 21 20 3 42 42 H 1.07999 * 120.24499 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1435 1.1896 0.0000 4 6 1.3919 2.4633 -0.0006 5 8 0.1815 2.4546 -0.1097 6 7 2.0488 3.6333 0.1255 7 6 1.3044 4.8951 0.1244 8 6 2.2802 6.0631 0.2798 9 6 3.0403 5.9206 1.6000 10 6 3.2736 6.0561 -0.8839 11 6 1.5027 7.3809 0.2792 12 6 2.4639 8.5313 0.4329 13 1 3.5234 8.3417 0.5217 14 6 1.9908 9.8262 0.4592 15 7 0.7006 10.0571 0.3506 16 14 3.1823 11.2522 0.6490 17 1 4.5684 10.7291 0.7500 18 1 3.0760 12.1465 -0.5318 19 1 2.8496 12.0148 1.8790 20 6 3.5063 1.2083 0.0061 21 6 4.2230 0.0009 0.0065 22 6 3.5447 -1.1791 0.0003 23 6 2.1323 -1.1697 -0.0054 24 8 1.5163 -2.2223 -0.0098 25 1 -0.3634 0.4384 -0.9295 26 1 -0.3634 -1.0241 0.0851 27 1 -0.3634 0.5857 0.8444 28 1 3.0144 3.6401 0.2170 29 1 0.7632 4.9969 -0.8163 30 1 0.5964 4.8999 0.9531 31 1 3.5942 4.9817 1.6008 32 1 3.7358 6.7525 1.7105 33 1 2.3327 5.9256 2.4290 34 1 2.7321 6.1577 -1.8244 35 1 3.9685 6.8885 -0.7734 36 1 3.8275 5.1173 -0.8831 37 1 0.9610 7.4827 -0.6611 38 1 0.7953 7.3857 1.1085 39 1 0.3677 10.9680 0.3695 40 1 4.0342 2.1505 0.0109 41 1 5.3030 0.0085 0.0118 42 1 4.0825 -2.1157 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359760998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:18 Heat of formation + Delta-G solvation = -65.890307 kcal Electronic energy + Delta-G solvation = -23374.655904 eV Core-core repulsion = 19933.216814 eV Total energy + Delta-G solvation = -3441.439090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.65808 -40.79414 -38.78704 -37.84727 -35.94242 -35.07325 -34.03456 -31.47302 -29.06595 -28.68298 -27.90282 -27.71946 -25.87567 -24.66524 -23.61254 -22.06114 -20.21010 -18.88094 -18.48059 -18.30994 -17.99761 -17.44691 -16.96044 -16.54864 -16.33796 -16.28297 -15.56829 -15.24069 -15.15965 -14.73278 -14.34830 -14.28573 -13.90430 -13.81770 -13.71192 -13.47107 -13.14310 -12.89544 -12.82572 -12.66687 -12.55262 -12.29302 -12.20428 -11.92755 -11.50560 -11.47080 -11.14987 -11.10217 -10.87355 -10.78447 -10.49702 -10.21411 -9.17196 -8.12049 -6.19035 -0.64006 0.59139 1.31104 1.43528 1.45664 1.56190 1.68641 2.00391 2.46502 2.58232 3.23497 3.30254 3.55242 3.85586 3.97404 4.11128 4.13404 4.20823 4.27212 4.34909 4.41330 4.68955 4.71511 4.74765 4.80231 4.85721 4.96586 5.01411 5.08801 5.16814 5.18761 5.31249 5.39836 5.47990 5.57017 5.58244 5.61265 5.84930 5.86446 5.93764 6.30733 6.37403 6.81326 6.95891 6.97308 7.49060 9.00572 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036770 B = 0.003051 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.317700 B = 9174.958235 C = 9730.041204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.483 5.483 3 C 0.094 3.906 4 C 0.549 3.451 5 O -0.561 6.561 6 N -0.684 5.684 7 C 0.141 3.859 8 C -0.065 4.065 9 C -0.125 4.125 10 C -0.125 4.125 11 C 0.038 3.962 12 C -0.510 4.510 13 H 0.075 0.925 14 C -0.006 4.006 15 N -0.939 5.939 16 Si 0.955 3.045 17 H -0.254 1.254 18 H -0.287 1.287 19 H -0.287 1.287 20 C -0.153 4.153 21 C -0.002 4.002 22 C -0.228 4.228 23 C 0.495 3.505 24 O -0.601 6.601 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.418 0.582 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.076 0.924 37 H -0.013 1.013 38 H -0.014 1.014 39 H 0.258 0.742 40 H 0.186 0.814 41 H 0.194 0.806 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.801 -17.582 -0.288 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.194 5.194 3 C -0.016 4.016 4 C 0.335 3.665 5 O -0.441 6.441 6 N -0.338 5.338 7 C 0.017 3.983 8 C -0.065 4.065 9 C -0.182 4.182 10 C -0.182 4.182 11 C 0.001 3.999 12 C -0.548 4.548 13 H 0.093 0.907 14 C -0.202 4.202 15 N -0.581 5.581 16 Si 0.781 3.219 17 H -0.178 1.178 18 H -0.213 1.213 19 H -0.214 1.214 20 C -0.178 4.178 21 C -0.023 4.023 22 C -0.250 4.250 23 C 0.299 3.701 24 O -0.488 6.488 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.259 0.741 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.067 0.933 40 H 0.203 0.797 41 H 0.211 0.789 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.387 -18.074 -0.365 20.849 hybrid contribution -0.239 1.246 0.072 1.271 sum 10.148 -16.827 -0.294 19.653 Atomic orbital electron populations 1.22171 0.76692 1.03751 1.04561 1.45426 1.09915 1.05723 1.58335 1.20177 0.93448 0.85395 1.02579 1.18118 0.86842 0.83972 0.77580 1.90834 1.14997 1.87507 1.50731 1.45739 1.11991 1.04333 1.71715 1.21366 0.94295 0.81537 1.01063 1.20725 0.95489 0.92982 0.97347 1.21739 0.99690 1.01759 0.95050 1.21740 0.98378 1.01940 0.96179 1.18984 0.94556 0.91911 0.94476 1.21649 0.94426 0.91087 1.47603 0.90669 1.25923 0.96424 1.02165 0.95727 1.70122 1.14529 1.20810 1.52625 0.85541 0.79960 0.79293 0.77116 1.17772 1.21345 1.21359 1.21523 0.89724 1.02401 1.04107 1.21907 1.03276 0.89495 0.87657 1.22568 0.90632 1.02449 1.09362 1.18008 0.90809 0.81948 0.79334 1.90901 1.71032 1.30592 1.56225 0.90123 0.89563 0.89827 0.74145 0.92653 0.92734 0.90594 0.92531 0.94440 0.94357 0.92547 0.90494 0.99483 0.99535 0.93297 0.79658 0.78863 0.81321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.76 8.93 127.77 1.14 2.90 16 2 N -0.48 -11.64 3.02 -660.61 -1.99 -13.64 16 3 C 0.09 1.83 6.63 40.45 0.27 2.10 16 4 C 0.55 13.27 7.69 86.80 0.67 13.94 16 5 O -0.56 -17.82 13.22 -3.85 -0.05 -17.87 16 6 N -0.68 -14.51 4.90 -465.96 -2.28 -16.79 16 7 C 0.14 4.21 4.56 86.38 0.39 4.60 16 8 C -0.06 -2.11 0.54 -52.18 -0.03 -2.14 16 9 C -0.13 -3.54 8.05 71.98 0.58 -2.96 16 10 C -0.13 -3.50 8.05 71.98 0.58 -2.92 16 11 C 0.04 1.80 4.04 29.85 0.12 1.92 16 12 C -0.51 -25.64 7.65 25.60 0.20 -25.45 16 13 H 0.08 3.50 5.68 -2.91 -0.02 3.48 16 14 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 15 N -0.94 -55.35 13.29 21.45 0.28 -55.07 16 16 Si 0.95 41.86 29.54 68.60 2.03 43.89 16 17 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 20 C -0.15 -1.63 9.49 22.35 0.21 -1.42 16 21 C 0.00 -0.02 10.08 22.30 0.22 0.21 16 22 C -0.23 -3.55 10.00 22.51 0.23 -3.33 16 23 C 0.50 12.52 7.43 85.00 0.63 13.15 16 24 O -0.60 -20.00 16.40 -5.19 -0.09 -20.09 16 25 H 0.08 2.09 7.37 -2.38 -0.02 2.07 16 26 H 0.09 2.23 6.88 -2.39 -0.02 2.21 16 27 H 0.08 2.15 7.08 -2.39 -0.02 2.14 16 28 H 0.42 5.78 4.17 -92.71 -0.39 5.39 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.42 6.86 -2.38 -0.02 1.41 16 32 H 0.06 1.77 6.62 -2.39 -0.02 1.75 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.06 1.75 6.62 -2.39 -0.02 1.74 16 36 H 0.08 1.40 6.86 -2.38 -0.02 1.39 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.19 0.62 6.34 -2.91 -0.02 0.60 16 41 H 0.19 -0.19 8.06 -2.91 -0.02 -0.21 16 42 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -74.29 338.02 4.22 -70.07 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.65 Total: 8.74 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 5.67 Total: 0.76 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -3.99 Total: -85.50 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.14 Total: -37.96 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -74.29 4.22 -70.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359760998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.177 kcal (2) G-P(sol) polarization free energy of solvation -74.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds