Wall clock time and date at job start Tue Mar 31 2020 07:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47129 * 60.00316 * 9 7 5 11 11 H 1.48498 * 109.47276 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47240 * 300.00255 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21493 * 120.00328 * 359.72056 * 15 14 13 17 17 C 1.48335 * 119.99563 * 179.72347 * 15 14 13 18 18 C 1.42274 * 126.93299 * 179.70376 * 17 15 14 19 19 C 1.35321 * 103.91544 * 179.88981 * 18 17 15 20 20 C 1.50697 * 126.66183 * 180.08284 * 19 18 17 21 21 C 1.52998 * 117.50081 * 189.06496 * 20 19 18 22 22 C 1.53005 * 117.49652 * 120.40523 * 20 19 18 23 23 O 1.34013 * 106.67263 * 0.37430 * 19 18 17 24 24 N 1.20907 * 111.84125 * 359.74505 * 23 19 18 25 25 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 26 26 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 27 27 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 30 30 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 31 31 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 32 32 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 33 33 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 34 34 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 35 35 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 36 36 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 37 37 H 1.07993 * 128.04299 * 0.02656 * 18 17 15 38 38 H 1.09002 * 115.55576 * 334.74343 * 20 19 18 39 39 H 1.09000 * 117.49712 * 0.02562 * 21 20 19 40 40 H 1.09000 * 117.50247 * 145.01496 * 21 20 19 41 41 H 1.09004 * 117.49941 * 214.97479 * 22 20 19 42 42 H 1.09002 * 117.50174 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 1.7444 1.7982 -5.2574 11 1 1.7422 -0.3023 -6.4696 12 1 -0.2367 0.3997 -5.2571 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5803 -1.4755 3.7811 17 6 1.3924 0.2152 4.8806 18 6 1.6438 -0.1395 6.2353 19 6 0.9867 0.8057 6.9466 20 6 0.9168 0.9154 8.4479 21 6 -0.0562 1.9387 9.0369 22 6 1.4515 2.1981 9.0881 23 8 0.4050 1.6214 6.0566 24 7 0.6367 1.2844 4.9188 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 -0.7209 -1.2494 32 1 1.6766 -1.7490 -1.2492 33 1 2.8594 -1.8841 -4.7335 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 0.9942 0.7584 2.3564 37 1 2.2258 -0.9689 6.6090 38 1 1.0587 -0.0168 8.9947 39 1 -0.6461 2.5323 8.3385 40 1 -0.5544 1.6798 9.9712 41 1 1.9447 2.1097 10.0562 42 1 1.8543 2.9624 8.4235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359767605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:39 Heat of formation + Delta-G solvation = 33.529314 kcal Electronic energy + Delta-G solvation = -22756.868978 eV Core-core repulsion = 19319.741046 eV Total energy + Delta-G solvation = -3437.127931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.29987 -39.61557 -37.84541 -37.16436 -34.20987 -33.67287 -32.18171 -31.60538 -27.29281 -26.69211 -26.51900 -24.83970 -23.91156 -23.03118 -22.82173 -22.07674 -19.91549 -18.37832 -18.00039 -17.68325 -16.82825 -16.39841 -16.08855 -15.49158 -15.12244 -14.83672 -14.51215 -13.84652 -13.76425 -13.64216 -13.13486 -12.84332 -12.75238 -12.22101 -12.09575 -12.05994 -11.90952 -11.62772 -11.19266 -11.00804 -10.98498 -10.87715 -10.64967 -10.60823 -10.43781 -10.28599 -10.24661 -9.89627 -9.50520 -9.21491 -8.95271 -8.86646 -8.36017 -6.00161 -4.01537 0.91763 1.43147 2.58409 3.05347 3.17797 3.32265 3.32350 3.37574 3.39172 3.81743 4.01597 4.26364 4.39369 4.45144 4.65782 4.87408 5.00666 5.13183 5.17987 5.33888 5.35167 5.46607 5.50633 5.58537 5.58542 5.64478 5.73620 6.15929 6.19104 6.22768 6.36418 6.45469 6.62425 6.70183 7.04028 7.05876 7.09851 7.50337 7.62651 7.74682 7.83688 7.98034 8.17784 8.40087 9.02732 9.61504 11.11245 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.042029 B = 0.002632 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.043368 B =10634.281298 C =11031.006082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.129 4.129 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.126 3.874 14 N -0.702 5.702 15 C 0.590 3.410 16 O -0.527 6.527 17 C -0.018 4.018 18 C -0.175 4.175 19 C -0.007 4.007 20 C -0.086 4.086 21 C -0.166 4.166 22 C -0.162 4.162 23 O 0.120 5.880 24 N -0.331 5.331 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.405 0.595 37 H 0.181 0.819 38 H 0.141 0.859 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 6.772 25.767 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.354 5.354 15 C 0.373 3.627 16 O -0.402 6.402 17 C -0.177 4.177 18 C -0.198 4.198 19 C -0.069 4.069 20 C -0.105 4.105 21 C -0.203 4.203 22 C -0.199 4.199 23 O 0.045 5.955 24 N -0.032 5.032 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.242 0.758 37 H 0.199 0.801 38 H 0.158 0.842 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.222 6.666 24.659 25.890 hybrid contribution -0.111 0.118 -0.620 0.640 sum -4.333 6.784 24.039 25.351 Atomic orbital electron populations 1.21778 0.95174 1.01246 1.00390 1.20924 0.95590 0.95920 0.94841 1.21779 1.00582 0.95842 1.00390 1.19091 0.96397 0.95240 0.89355 1.21136 1.31295 1.12085 0.90486 0.92293 1.25012 0.95308 0.95089 0.99088 1.69950 1.36906 1.22957 1.23575 0.86697 0.79147 0.79762 0.82610 1.20319 1.21394 1.20322 1.21780 0.99218 0.96185 0.82428 1.46120 1.52077 1.31887 1.05313 1.16905 0.80638 0.83581 0.81616 1.90798 1.37808 1.25424 1.86150 1.23648 1.01488 0.95932 0.96664 1.22344 1.04551 1.02670 0.90201 1.23411 0.97983 0.92332 0.93218 1.20445 1.08441 0.97058 0.84593 1.23111 0.92900 1.01123 1.03177 1.23149 0.96952 0.97276 1.02532 1.84749 1.55422 1.44955 1.10352 1.74198 1.15334 1.14238 0.99430 0.95241 0.91249 0.93270 0.93273 0.91251 0.95241 0.96252 0.96245 0.92967 0.91274 0.91266 0.75842 0.80134 0.84157 0.87662 0.87478 0.87383 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 2 C -0.07 -1.41 0.54 -154.51 -0.08 -1.49 16 3 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.67 7.65 -34.44 -0.26 -13.93 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.13 2.30 4.56 -4.04 -0.02 2.28 16 14 N -0.70 -11.37 4.96 -61.09 -0.30 -11.67 16 15 C 0.59 9.80 7.85 -12.10 -0.09 9.70 16 16 O -0.53 -10.15 16.95 5.37 0.09 -10.06 16 17 C -0.02 -0.25 7.19 -82.53 -0.59 -0.85 16 18 C -0.18 -1.96 10.92 -39.07 -0.43 -2.39 16 19 C -0.01 -0.06 6.93 -35.35 -0.24 -0.31 16 20 C -0.09 -0.49 6.26 -91.77 -0.57 -1.07 16 21 C -0.17 -0.76 10.18 -26.69 -0.27 -1.03 16 22 C -0.16 -0.75 10.24 -26.69 -0.27 -1.02 16 23 O 0.12 1.34 10.96 17.25 0.19 1.53 16 24 N -0.33 -4.43 11.84 33.29 0.39 -4.03 16 25 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 26 H 0.07 1.35 6.62 -51.93 -0.34 1.00 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.35 6.62 -51.93 -0.34 1.00 16 30 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.41 6.08 5.92 -40.82 -0.24 5.83 16 37 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.54 8.01 -51.93 -0.42 0.13 16 40 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -31.25 351.14 -7.22 -38.47 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.14 Total: 1.84 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.46 Total: -11.94 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.83 Total: -41.45 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.28 Total: -8.52 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.25 -7.22 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.002 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds