Wall clock time and date at job start Tue Mar 31 2020 07:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47129 * 60.00316 * 9 7 5 11 11 H 1.48498 * 109.47276 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47240 * 300.00255 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21493 * 120.00328 * 359.72056 * 15 14 13 17 17 C 1.48335 * 119.99563 * 179.72347 * 15 14 13 18 18 C 1.42274 * 126.93299 * 179.70376 * 17 15 14 19 19 C 1.35321 * 103.91544 * 179.88981 * 18 17 15 20 20 C 1.50697 * 126.66183 * 180.08284 * 19 18 17 21 21 C 1.52998 * 117.50081 * 189.06496 * 20 19 18 22 22 C 1.53005 * 117.49652 * 120.40523 * 20 19 18 23 23 O 1.34013 * 106.67263 * 0.37430 * 19 18 17 24 24 N 1.20907 * 111.84125 * 359.74505 * 23 19 18 25 25 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 26 26 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 27 27 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 30 30 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 31 31 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 32 32 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 33 33 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 34 34 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 35 35 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 36 36 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 37 37 H 1.07993 * 128.04299 * 0.02656 * 18 17 15 38 38 H 1.09002 * 115.55576 * 334.74343 * 20 19 18 39 39 H 1.09000 * 117.49712 * 0.02562 * 21 20 19 40 40 H 1.09000 * 117.50247 * 145.01496 * 21 20 19 41 41 H 1.09004 * 117.49941 * 214.97479 * 22 20 19 42 42 H 1.09002 * 117.50174 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 1.7444 1.7982 -5.2574 11 1 1.7422 -0.3023 -6.4696 12 1 -0.2367 0.3997 -5.2571 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5803 -1.4755 3.7811 17 6 1.3924 0.2152 4.8806 18 6 1.6438 -0.1395 6.2353 19 6 0.9867 0.8057 6.9466 20 6 0.9168 0.9154 8.4479 21 6 -0.0562 1.9387 9.0369 22 6 1.4515 2.1981 9.0881 23 8 0.4050 1.6214 6.0566 24 7 0.6367 1.2844 4.9188 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1300 -0.7209 -1.2494 32 1 1.6766 -1.7490 -1.2492 33 1 2.8594 -1.8841 -4.7335 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 0.9942 0.7584 2.3564 37 1 2.2258 -0.9689 6.6090 38 1 1.0587 -0.0168 8.9947 39 1 -0.6461 2.5323 8.3385 40 1 -0.5544 1.6798 9.9712 41 1 1.9447 2.1097 10.0562 42 1 1.8543 2.9624 8.4235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359767605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:38 Heat of formation + Delta-G solvation = 15.018146 kcal Electronic energy + Delta-G solvation = -22757.671682 eV Core-core repulsion = 19319.741046 eV Total energy + Delta-G solvation = -3437.930636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.24101 -41.00880 -38.76632 -38.26912 -35.46778 -35.08485 -33.99597 -32.53344 -29.21992 -28.17273 -28.04142 -26.04528 -24.90816 -24.40647 -23.24030 -23.18253 -21.16264 -19.82215 -18.94861 -18.56586 -18.37089 -17.98771 -17.02746 -16.65140 -16.53755 -16.41624 -15.62156 -15.22863 -15.10350 -14.79739 -14.52263 -14.39548 -13.97657 -13.88377 -13.38663 -12.88806 -12.78658 -12.73114 -12.66486 -12.37957 -12.37756 -12.27132 -12.17622 -12.05116 -11.67185 -11.64533 -11.60160 -11.35377 -11.03112 -10.91114 -10.51647 -10.30396 -10.20706 -8.14939 -6.22725 -0.06114 0.54300 1.41892 1.43866 1.51086 1.71497 1.91898 1.94623 2.43580 2.78566 2.93502 3.19323 3.31304 3.72997 3.85195 3.92034 3.99880 4.02636 4.05298 4.14671 4.29780 4.47364 4.61046 4.63347 4.68272 4.81745 4.84981 4.87757 4.98101 5.03464 5.05732 5.16076 5.20930 5.28433 5.37685 5.44633 5.46127 5.52811 5.74715 5.87443 6.19896 6.30154 6.81890 6.91250 6.95248 7.44721 8.97261 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.042029 B = 0.002632 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.043368 B =10634.281298 C =11031.006082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.071 0.929 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.138 3.862 14 N -0.695 5.695 15 C 0.591 3.409 16 O -0.559 6.559 17 C -0.041 4.041 18 C -0.188 4.188 19 C 0.014 3.986 20 C -0.099 4.099 21 C -0.161 4.161 22 C -0.156 4.156 23 O 0.128 5.872 24 N -0.344 5.344 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.060 0.940 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.413 0.587 37 H 0.194 0.806 38 H 0.164 0.836 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 8.680 27.969 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.192 1.192 13 C 0.015 3.985 14 N -0.347 5.347 15 C 0.376 3.624 16 O -0.437 6.437 17 C -0.199 4.199 18 C -0.210 4.210 19 C -0.049 4.049 20 C -0.118 4.118 21 C -0.197 4.197 22 C -0.193 4.193 23 O 0.051 5.949 24 N -0.044 5.044 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.251 0.749 37 H 0.211 0.789 38 H 0.181 0.819 39 H 0.116 0.884 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.603 8.605 26.858 28.754 hybrid contribution 0.308 -0.455 -1.169 1.291 sum -5.295 8.151 25.689 27.466 Atomic orbital electron populations 1.21706 0.93765 1.01151 1.01410 1.20722 0.96606 0.96255 0.92882 1.21708 1.00155 0.94760 1.01410 1.18958 0.94510 0.94293 0.91870 1.21534 1.30613 1.12121 0.91080 0.91105 1.25933 0.95651 0.95876 1.02659 1.70104 1.38652 1.24818 1.24198 0.85595 0.78924 0.78737 0.78354 1.19224 1.21594 1.19232 1.21432 0.98456 0.95686 0.82936 1.45928 1.52118 1.31929 1.04708 1.17193 0.79852 0.83144 0.82201 1.90775 1.39254 1.26912 1.86711 1.23387 1.03084 0.96886 0.96538 1.22549 1.05527 1.03848 0.89120 1.23998 0.95809 0.90602 0.94477 1.20754 1.10131 0.98797 0.82135 1.23226 0.92913 0.99942 1.03658 1.23253 0.97222 0.95827 1.03024 1.84719 1.55048 1.44990 1.10144 1.74183 1.15489 1.14100 1.00580 0.92121 0.92204 0.93989 0.93995 0.92206 0.92122 0.99158 0.99153 0.93115 0.92418 0.92404 0.74890 0.78895 0.81903 0.88427 0.85386 0.85288 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.05 71.98 0.58 -3.81 16 2 C -0.06 -2.52 0.54 -52.18 -0.03 -2.55 16 3 C -0.12 -4.39 8.05 71.98 0.58 -3.81 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.52 -27.85 7.65 25.60 0.20 -27.66 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.58 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -57.05 13.29 21.45 0.28 -56.77 16 9 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.14 5.13 4.56 86.38 0.39 5.53 16 14 N -0.69 -22.20 4.96 -465.49 -2.31 -24.50 16 15 C 0.59 19.63 7.85 86.93 0.68 20.31 16 16 O -0.56 -21.91 16.95 -3.69 -0.06 -21.97 16 17 C -0.04 -1.13 7.19 42.96 0.31 -0.82 16 18 C -0.19 -3.96 10.92 22.60 0.25 -3.71 16 19 C 0.01 0.23 6.93 25.01 0.17 0.41 16 20 C -0.10 -0.84 6.26 -11.54 -0.07 -0.91 16 21 C -0.16 -0.96 10.18 30.62 0.31 -0.64 16 22 C -0.16 -0.95 10.24 30.62 0.31 -0.64 16 23 O 0.13 2.64 10.96 71.91 0.79 3.43 16 24 N -0.34 -8.74 11.84 -49.51 -0.59 -9.33 16 25 H 0.06 1.77 6.86 -2.39 -0.02 1.76 16 26 H 0.06 2.25 6.62 -2.38 -0.02 2.23 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 2.25 6.62 -2.38 -0.02 2.23 16 30 H 0.06 1.77 6.86 -2.39 -0.02 1.76 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 11.77 5.92 -92.71 -0.55 11.22 16 37 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 0.76 8.01 -2.39 -0.02 0.74 16 40 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -69.06 351.14 4.90 -64.17 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.48 Total: 14.87 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 4.27 Total: -15.83 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -2.61 Total: -90.60 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.73 Total: -18.55 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.06 4.90 -64.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.184 kcal (2) G-P(sol) polarization free energy of solvation -69.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds