Wall clock time and date at job start Tue Mar 31 2020 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47029 * 2 1 4 4 C 1.50693 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.36241 * 126.50794 * 270.03758 * 4 3 2 6 6 C 1.46844 * 125.80154 * 359.97438 * 5 4 3 7 7 O 1.21670 * 119.99841 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00017 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00305 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47589 * 180.02562 * 9 8 6 11 11 H 1.08007 * 119.99774 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00209 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99812 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00068 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47434 * 60.00119 * 14 12 10 16 16 H 1.48501 * 109.47150 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47260 * 299.99763 * 14 12 10 18 18 N 1.37845 * 108.39997 * 179.70884 * 5 4 3 19 19 H 0.96996 * 125.35265 * 180.29917 * 18 5 4 20 20 C 1.34112 * 109.29963 * 0.43640 * 18 5 4 21 21 C 1.50699 * 125.82411 * 179.82983 * 20 18 5 22 22 C 1.38619 * 108.34928 * 359.56654 * 20 18 5 23 23 C 1.46612 * 126.51655 * 180.26242 * 22 20 18 24 24 C 1.50700 * 120.00116 * 274.38350 * 23 22 20 25 25 O 1.21320 * 119.99915 * 94.38356 * 23 22 20 26 26 H 1.08992 * 109.47111 * 299.99751 * 1 2 3 27 27 H 1.08995 * 109.46992 * 60.00162 * 1 2 3 28 28 H 1.09003 * 109.46382 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47350 * 240.00312 * 2 1 3 30 30 H 1.08999 * 109.47460 * 119.99963 * 2 1 3 31 31 H 1.08996 * 109.46825 * 59.99696 * 3 2 1 32 32 H 1.08999 * 109.46969 * 300.00263 * 3 2 1 33 33 H 0.97000 * 120.00290 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46977 * 300.00976 * 9 8 6 35 35 H 1.09006 * 109.46716 * 60.00042 * 9 8 6 36 36 H 0.97001 * 119.99524 * 180.02562 * 13 12 10 37 37 H 1.08993 * 109.47402 * 264.37460 * 21 20 18 38 38 H 1.09002 * 109.46800 * 144.37320 * 21 20 18 39 39 H 1.09001 * 109.47381 * 24.38105 * 21 20 18 40 40 H 1.08996 * 109.47206 * 65.02390 * 24 23 22 41 41 H 1.08998 * 109.47355 * 185.01887 * 24 23 22 42 42 H 1.09002 * 109.47261 * 305.02205 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3579 1.4417 1.0941 6 6 3.9123 1.4411 2.4933 7 8 2.7237 1.4419 2.7531 8 7 4.8199 1.4398 3.4896 9 6 4.3754 1.4397 4.8856 10 6 5.5767 1.4387 5.7954 11 1 6.5719 1.4386 5.3758 12 6 5.4054 1.4380 7.1634 13 7 4.1935 1.4376 7.6744 14 14 6.8945 1.4374 8.2912 15 1 7.7117 2.6501 8.0327 16 1 6.4439 1.4360 9.7062 17 1 7.7118 0.2250 8.0314 18 7 5.6679 1.4355 0.6651 19 1 6.4474 1.4294 1.2423 20 6 5.6953 1.4420 -0.6757 21 6 6.9349 1.4420 -1.5326 22 6 4.3887 1.4428 -1.1389 23 6 3.9601 1.4437 -2.5409 24 6 3.8358 2.7455 -3.2900 25 8 3.7056 0.3965 -3.0981 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 5.7675 1.4396 3.2824 34 1 3.7764 2.3302 5.0761 35 1 3.7745 0.5503 5.0755 36 1 4.0730 1.4375 8.6369 37 1 7.1801 2.4652 -1.8171 38 1 6.7567 0.8484 -2.4293 39 1 7.7646 1.0121 -0.9715 40 1 4.8198 3.2040 -3.3875 41 1 3.4233 2.5564 -4.2810 42 1 3.1743 3.4175 -2.7433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427634841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:16 Heat of formation + Delta-G solvation = -61.581453 kcal Electronic energy + Delta-G solvation = -23322.051478 eV Core-core repulsion = 19880.799234 eV Total energy + Delta-G solvation = -3441.252244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.61858 -38.97353 -38.25100 -35.21579 -34.17208 -32.53738 -31.86867 -31.54392 -29.78603 -27.94015 -27.11403 -25.83973 -23.30384 -22.21540 -21.61573 -20.59792 -19.19053 -18.60220 -18.20033 -16.38665 -15.59160 -15.50054 -15.32647 -15.02011 -14.74296 -14.63360 -14.46774 -14.12963 -14.02748 -13.72087 -13.12026 -13.06845 -12.90365 -12.57911 -12.48810 -12.34690 -12.13932 -12.04534 -11.81361 -11.58013 -11.08113 -11.03541 -10.96540 -10.93893 -10.42906 -10.30807 -9.88518 -9.50023 -9.23359 -8.82205 -8.74448 -8.18915 -7.84819 -6.23401 -4.31304 1.65159 1.86761 2.38711 3.01351 3.19726 3.24923 3.26256 3.85759 3.90896 4.23309 4.33930 4.57229 4.86267 5.00126 5.10811 5.12771 5.20177 5.22659 5.25124 5.36638 5.40550 5.43467 5.56087 5.65136 5.70490 5.85241 5.92332 6.09315 6.11197 6.17268 6.31979 6.56987 6.61991 6.67700 6.89724 7.21672 7.27259 7.34787 7.43379 7.46954 7.57339 7.88648 8.47500 8.68018 8.93268 9.35216 10.86619 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.003805 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.990615 B = 7357.338506 C = 8524.328638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.058 4.058 4 C -0.042 4.042 5 C -0.037 4.037 6 C 0.570 3.430 7 O -0.533 6.533 8 N -0.711 5.711 9 C 0.251 3.749 10 C -0.548 4.548 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.883 5.883 14 Si 0.904 3.096 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.275 1.275 18 N -0.523 5.523 19 H 0.419 0.581 20 C 0.082 3.918 21 C -0.093 4.093 22 C -0.258 4.258 23 C 0.439 3.561 24 C -0.197 4.197 25 O -0.455 6.455 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.383 0.617 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 2.497 -19.716 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.096 4.096 4 C -0.049 4.049 5 C -0.149 4.149 6 C 0.355 3.645 7 O -0.411 6.411 8 N -0.359 5.359 9 C 0.131 3.869 10 C -0.586 4.586 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.520 5.520 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.201 1.201 18 N -0.118 5.118 19 H 0.257 0.743 20 C -0.039 4.039 21 C -0.151 4.151 22 C -0.266 4.266 23 C 0.314 3.686 24 C -0.254 4.254 25 O -0.328 6.328 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.215 0.785 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.349 1.930 -19.424 19.660 hybrid contribution 1.799 0.101 1.036 2.078 sum 4.147 2.031 -18.388 18.959 Atomic orbital electron populations 1.21737 0.95948 1.01285 1.01582 1.21380 0.95423 0.96125 1.02048 1.20223 0.88459 0.97887 1.02985 1.19472 0.95293 1.01075 0.89092 1.20282 0.82528 1.17301 0.94819 1.17110 0.86579 0.78202 0.82626 1.90777 1.15754 1.51391 1.83168 1.46408 1.08152 1.72583 1.08737 1.19150 0.95975 0.98035 0.73721 1.21142 0.92246 1.53864 0.91323 0.92106 1.24938 0.96325 0.94568 0.98034 1.69960 1.20822 1.48407 1.12812 0.86471 0.82216 0.78660 0.79536 1.20065 1.20964 1.20071 1.41598 1.08002 1.55966 1.06268 0.74258 1.20502 0.95311 1.04861 0.83200 1.20474 0.92607 1.03393 0.98605 1.19767 0.92593 1.19578 0.94679 1.21657 0.70970 0.90114 0.85817 1.22279 1.04449 0.97289 1.01414 1.90548 1.36986 1.35812 1.69489 0.92320 0.93268 0.93059 0.92489 0.91584 0.88683 0.92231 0.78525 0.95210 0.95211 0.92274 0.90024 0.89962 0.90835 0.88976 0.90129 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 3 C -0.06 -0.88 4.97 -27.88 -0.14 -1.02 16 4 C -0.04 -0.65 5.47 -104.07 -0.57 -1.22 16 5 C -0.04 -0.61 6.98 -82.40 -0.58 -1.18 16 6 C 0.57 11.47 7.79 -12.78 -0.10 11.38 16 7 O -0.53 -12.42 14.68 5.22 0.08 -12.35 16 8 N -0.71 -14.58 5.54 -62.75 -0.35 -14.93 16 9 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 10 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 11 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 12 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.88 -25.53 13.29 55.43 0.74 -24.79 16 14 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 N -0.52 -6.45 5.90 -5.55 -0.03 -6.49 16 19 H 0.42 4.08 8.13 -40.82 -0.33 3.75 16 20 C 0.08 0.93 7.22 -81.46 -0.59 0.35 16 21 C -0.09 -0.68 10.20 36.01 0.37 -0.31 16 22 C -0.26 -3.44 5.81 -105.11 -0.61 -4.05 16 23 C 0.44 5.36 6.53 -30.93 -0.20 5.16 16 24 C -0.20 -1.59 10.23 36.01 0.37 -1.23 16 25 O -0.46 -6.98 17.85 5.52 0.10 -6.88 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.63 6.41 -51.93 -0.33 1.30 16 32 H 0.06 0.78 8.05 -51.93 -0.42 0.37 16 33 H 0.38 6.58 7.40 -40.82 -0.30 6.28 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.60 8.12 -51.93 -0.42 0.17 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -33.19 360.94 -7.74 -40.93 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.41 Total: 5.90 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.28 Total: -2.20 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.36 Total: -46.21 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.18 Total: -19.22 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.19 -7.74 -40.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.649 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds