Wall clock time and date at job start Tue Mar 31 2020 06:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47029 * 2 1 4 4 C 1.50693 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.36241 * 126.50794 * 270.03758 * 4 3 2 6 6 C 1.46844 * 125.80154 * 359.97438 * 5 4 3 7 7 O 1.21670 * 119.99841 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00017 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00305 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47589 * 180.02562 * 9 8 6 11 11 H 1.08007 * 119.99774 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00209 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99812 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00068 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47434 * 60.00119 * 14 12 10 16 16 H 1.48501 * 109.47150 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47260 * 299.99763 * 14 12 10 18 18 N 1.37845 * 108.39997 * 179.70884 * 5 4 3 19 19 H 0.96996 * 125.35265 * 180.29917 * 18 5 4 20 20 C 1.34112 * 109.29963 * 0.43640 * 18 5 4 21 21 C 1.50699 * 125.82411 * 179.82983 * 20 18 5 22 22 C 1.38619 * 108.34928 * 359.56654 * 20 18 5 23 23 C 1.46612 * 126.51655 * 180.26242 * 22 20 18 24 24 C 1.50700 * 120.00116 * 274.38350 * 23 22 20 25 25 O 1.21320 * 119.99915 * 94.38356 * 23 22 20 26 26 H 1.08992 * 109.47111 * 299.99751 * 1 2 3 27 27 H 1.08995 * 109.46992 * 60.00162 * 1 2 3 28 28 H 1.09003 * 109.46382 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47350 * 240.00312 * 2 1 3 30 30 H 1.08999 * 109.47460 * 119.99963 * 2 1 3 31 31 H 1.08996 * 109.46825 * 59.99696 * 3 2 1 32 32 H 1.08999 * 109.46969 * 300.00263 * 3 2 1 33 33 H 0.97000 * 120.00290 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46977 * 300.00976 * 9 8 6 35 35 H 1.09006 * 109.46716 * 60.00042 * 9 8 6 36 36 H 0.97001 * 119.99524 * 180.02562 * 13 12 10 37 37 H 1.08993 * 109.47402 * 264.37460 * 21 20 18 38 38 H 1.09002 * 109.46800 * 144.37320 * 21 20 18 39 39 H 1.09001 * 109.47381 * 24.38105 * 21 20 18 40 40 H 1.08996 * 109.47206 * 65.02390 * 24 23 22 41 41 H 1.08998 * 109.47355 * 185.01887 * 24 23 22 42 42 H 1.09002 * 109.47261 * 305.02205 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3579 1.4417 1.0941 6 6 3.9123 1.4411 2.4933 7 8 2.7237 1.4419 2.7531 8 7 4.8199 1.4398 3.4896 9 6 4.3754 1.4397 4.8856 10 6 5.5767 1.4387 5.7954 11 1 6.5719 1.4386 5.3758 12 6 5.4054 1.4380 7.1634 13 7 4.1935 1.4376 7.6744 14 14 6.8945 1.4374 8.2912 15 1 7.7117 2.6501 8.0327 16 1 6.4439 1.4360 9.7062 17 1 7.7118 0.2250 8.0314 18 7 5.6679 1.4355 0.6651 19 1 6.4474 1.4294 1.2423 20 6 5.6953 1.4420 -0.6757 21 6 6.9349 1.4420 -1.5326 22 6 4.3887 1.4428 -1.1389 23 6 3.9601 1.4437 -2.5409 24 6 3.8358 2.7455 -3.2900 25 8 3.7056 0.3965 -3.0981 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 5.7675 1.4396 3.2824 34 1 3.7764 2.3302 5.0761 35 1 3.7745 0.5503 5.0755 36 1 4.0730 1.4375 8.6369 37 1 7.1801 2.4652 -1.8171 38 1 6.7567 0.8484 -2.4293 39 1 7.7646 1.0121 -0.9715 40 1 4.8198 3.2040 -3.3875 41 1 3.4233 2.5564 -4.2810 42 1 3.1743 3.4175 -2.7433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427634841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:14 Heat of formation + Delta-G solvation = -84.086958 kcal Electronic energy + Delta-G solvation = -23323.027389 eV Core-core repulsion = 19880.799234 eV Total energy + Delta-G solvation = -3442.228156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.73748 -40.25574 -39.61845 -36.60049 -35.89907 -34.42524 -32.90856 -32.59060 -30.59267 -29.66345 -28.22960 -27.19520 -24.96108 -23.43048 -22.89697 -22.04277 -20.59917 -19.71439 -19.44539 -18.20286 -17.08316 -16.73542 -16.61886 -16.30384 -16.19914 -15.98303 -15.62704 -15.34419 -15.22477 -14.88767 -14.55873 -14.19977 -14.06077 -13.93348 -13.82251 -13.30524 -13.22446 -13.03113 -12.96484 -12.91680 -12.70449 -12.69705 -12.27761 -12.16118 -12.14388 -11.64008 -11.54795 -10.99228 -10.82688 -10.75013 -10.00165 -9.82855 -9.09012 -8.31507 -6.48911 0.42634 0.93489 1.31653 1.41670 1.45556 1.53867 1.97950 2.26533 2.32912 2.48334 3.03617 3.34048 3.72218 3.84999 4.00451 4.07695 4.19697 4.25379 4.33990 4.46815 4.62091 4.67194 4.73611 4.79387 4.80752 4.87709 4.95333 5.00894 5.06449 5.10111 5.15515 5.20169 5.24675 5.35910 5.38683 5.44525 5.53007 5.64307 5.76622 5.81986 6.37601 6.56787 6.59519 6.80522 7.18122 7.34220 8.80418 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.003805 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.990615 B = 7357.338506 C = 8524.328638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.058 4.058 4 C -0.044 4.044 5 C -0.071 4.071 6 C 0.569 3.431 7 O -0.576 6.576 8 N -0.706 5.706 9 C 0.270 3.730 10 C -0.559 4.559 11 H 0.084 0.916 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.985 3.015 15 H -0.261 1.261 16 H -0.286 1.286 17 H -0.263 1.263 18 N -0.512 5.512 19 H 0.432 0.568 20 C 0.116 3.884 21 C -0.095 4.095 22 C -0.282 4.282 23 C 0.444 3.556 24 C -0.191 4.191 25 O -0.493 6.493 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.401 0.599 34 H -0.008 1.008 35 H -0.011 1.011 36 H 0.269 0.731 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.475 3.271 -21.884 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.096 4.096 4 C -0.053 4.053 5 C -0.182 4.182 6 C 0.357 3.643 7 O -0.456 6.456 8 N -0.355 5.355 9 C 0.147 3.853 10 C -0.597 4.597 11 H 0.102 0.898 12 C -0.194 4.194 13 N -0.567 5.567 14 Si 0.808 3.192 15 H -0.185 1.185 16 H -0.211 1.211 17 H -0.187 1.187 18 N -0.109 5.109 19 H 0.273 0.727 20 C -0.007 4.007 21 C -0.152 4.152 22 C -0.290 4.290 23 C 0.322 3.678 24 C -0.248 4.248 25 O -0.369 6.369 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.236 0.764 34 H 0.010 0.990 35 H 0.007 0.993 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.499 2.718 -21.617 22.470 hybrid contribution 0.819 -0.141 1.593 1.797 sum 6.318 2.577 -20.023 21.154 Atomic orbital electron populations 1.21714 0.94283 1.02130 1.02040 1.21300 0.96932 0.95822 1.00366 1.20198 0.88956 0.97706 1.02720 1.19675 0.95487 1.00092 0.90005 1.19559 0.84692 1.21557 0.92432 1.17611 0.85881 0.76697 0.84091 1.90746 1.17587 1.53065 1.84227 1.46052 1.09315 1.73211 1.06885 1.18576 0.95475 0.94401 0.76830 1.21550 0.93009 1.53407 0.91722 0.89787 1.26054 0.99640 0.93738 0.99991 1.70132 1.23706 1.49607 1.13281 0.85208 0.77925 0.79503 0.76588 1.18500 1.21142 1.18716 1.41535 1.06943 1.55366 1.07018 0.72726 1.21263 0.96382 1.00325 0.82745 1.20724 0.90816 1.05597 0.98019 1.20043 0.93074 1.20873 0.94961 1.22132 0.69385 0.91107 0.85187 1.22298 1.06391 0.94923 1.01150 1.90544 1.38817 1.37503 1.70048 0.93396 0.91200 0.92067 0.92477 0.94708 0.91278 0.89959 0.76374 0.98998 0.99273 0.92178 0.87024 0.89439 0.88797 0.86077 0.89298 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.13 16 2 C -0.11 -3.37 5.92 30.60 0.18 -3.19 16 3 C -0.06 -1.83 4.97 29.85 0.15 -1.68 16 4 C -0.04 -1.39 5.47 -19.51 -0.11 -1.50 16 5 C -0.07 -2.35 6.98 39.99 0.28 -2.07 16 6 C 0.57 24.16 7.79 86.50 0.67 24.84 16 7 O -0.58 -29.01 14.68 -4.25 -0.06 -29.07 16 8 N -0.71 -30.06 5.54 -470.66 -2.61 -32.67 16 9 C 0.27 14.72 5.43 85.63 0.46 15.19 16 10 C -0.56 -29.91 9.28 25.60 0.24 -29.67 16 11 H 0.08 4.00 7.60 -2.91 -0.02 3.97 16 12 C 0.01 0.32 5.46 84.65 0.46 0.78 16 13 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 14 Si 0.98 41.48 29.54 68.60 2.03 43.51 16 15 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 16 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 18 N -0.51 -11.73 5.90 -171.47 -1.01 -12.74 16 19 H 0.43 7.40 8.13 -92.71 -0.75 6.65 16 20 C 0.12 2.29 7.22 42.30 0.31 2.59 16 21 C -0.09 -0.92 10.20 71.24 0.73 -0.20 16 22 C -0.28 -7.02 5.81 -20.18 -0.12 -7.13 16 23 C 0.44 9.84 6.53 27.87 0.18 10.02 16 24 C -0.19 -2.43 10.23 71.24 0.73 -1.70 16 25 O -0.49 -14.42 17.85 -3.15 -0.06 -14.48 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 2.54 6.41 -2.39 -0.02 2.53 16 32 H 0.08 2.14 8.05 -2.39 -0.02 2.12 16 33 H 0.40 13.77 7.40 -92.71 -0.69 13.09 16 34 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 36 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 0.88 8.07 -2.39 -0.02 0.86 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 1.02 8.12 -2.39 -0.02 1.00 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -77.43 360.94 3.05 -74.38 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.40 Total: 23.19 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.88 Total: 3.16 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -3.34 Total: -100.69 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.12 Total: -43.55 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -77.43 3.05 -74.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.707 kcal (2) G-P(sol) polarization free energy of solvation -77.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds