Wall clock time and date at job start Tue Mar 31 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47546 * 2 1 4 4 C 1.53000 * 109.46924 * 119.99985 * 2 1 3 5 5 C 1.50699 * 109.47106 * 239.99799 * 2 1 3 6 6 C 1.35324 * 126.66563 * 60.00240 * 5 2 1 7 7 C 1.42271 * 103.92007 * 180.02562 * 6 5 2 8 8 C 1.48329 * 126.93399 * 180.02562 * 7 6 5 9 9 O 1.21498 * 119.99931 * 356.72805 * 8 7 6 10 10 N 1.34773 * 120.00126 * 176.73174 * 8 7 6 11 11 C 1.46500 * 120.00305 * 185.11294 * 10 8 7 12 12 C 1.53003 * 109.46977 * 184.37160 * 11 10 8 13 13 C 1.50701 * 115.55035 * 64.92778 * 12 11 10 14 14 H 1.07997 * 119.99814 * 266.89981 * 13 12 11 15 15 C 1.37882 * 119.99935 * 86.90335 * 13 12 11 16 16 N 1.31509 * 119.99789 * 180.92122 * 15 13 12 17 17 Si 1.86800 * 120.00032 * 0.92219 * 15 13 12 18 18 H 1.48496 * 109.47300 * 84.92538 * 17 15 13 19 19 H 1.48504 * 109.46881 * 204.92560 * 17 15 13 20 20 H 1.48497 * 109.47021 * 324.92372 * 17 15 13 21 21 C 1.52994 * 117.49702 * 279.25686 * 12 11 10 22 22 C 1.52997 * 117.49495 * 210.59720 * 12 11 10 23 23 N 1.30984 * 106.12523 * 0.02562 * 7 6 5 24 24 O 1.20902 * 111.43881 * 359.70173 * 23 7 6 25 25 H 1.09000 * 109.47651 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47406 * 59.99681 * 1 2 3 27 27 H 1.09002 * 109.47218 * 300.00430 * 1 2 3 28 28 H 1.09002 * 109.47213 * 59.99567 * 3 2 1 29 29 H 1.09000 * 109.47605 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47166 * 300.00021 * 3 2 1 31 31 H 1.08998 * 109.47186 * 60.00045 * 4 2 1 32 32 H 1.08998 * 109.47363 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47575 * 299.99937 * 4 2 1 34 34 H 1.07997 * 128.03205 * 0.02562 * 6 5 2 35 35 H 0.97001 * 119.99741 * 5.11582 * 10 8 7 36 36 H 1.08998 * 109.46751 * 304.36553 * 11 10 8 37 37 H 1.08993 * 109.47224 * 64.36506 * 11 10 8 38 38 H 0.96997 * 119.99719 * 180.02562 * 16 15 13 39 39 H 1.08997 * 117.49923 * 359.97438 * 21 12 11 40 40 H 1.08997 * 117.50158 * 145.02314 * 21 12 11 41 41 H 1.09001 * 117.49847 * 214.98248 * 22 12 11 42 42 H 1.09002 * 117.50072 * 359.97378 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0323 -0.7104 -1.2304 6 6 1.7900 -0.3677 -2.5169 7 6 2.4861 -1.3534 -3.2706 8 6 2.5602 -1.4576 -4.7484 9 8 1.9378 -0.6800 -5.4442 10 7 3.3177 -2.4150 -5.3193 11 6 3.4808 -2.4493 -6.7748 12 6 4.2904 -3.6865 -7.1683 13 6 3.6325 -5.0118 -6.8820 14 1 3.8302 -5.5229 -5.9514 15 6 2.7784 -5.5719 -7.8083 16 7 2.1903 -6.7196 -7.5508 17 14 2.4567 -4.7004 -9.4289 18 1 3.5199 -5.0571 -10.4023 19 1 1.1359 -5.1197 -9.9627 20 1 2.4586 -3.2317 -9.2100 21 6 5.8120 -3.6085 -7.0295 22 6 5.1677 -3.5885 -8.4179 23 7 3.0484 -2.1501 -2.3961 24 8 2.8093 -1.8018 -1.2633 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 -1.7489 1.2493 32 1 3.1299 -0.7217 1.2491 33 1 1.6766 -0.2075 2.1392 34 1 1.2043 0.4613 -2.8857 35 1 3.7550 -3.0814 -4.7664 36 1 2.5003 -2.4907 -7.2493 37 1 4.0056 -1.5521 -7.1029 38 1 1.5897 -7.1137 -8.2025 39 1 6.2363 -2.6757 -6.6583 40 1 6.3374 -4.5158 -6.7315 41 1 5.2694 -4.4828 -9.0328 42 1 5.1678 -2.6428 -8.9599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431154363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:44 Heat of formation + Delta-G solvation = 36.344423 kcal Electronic energy + Delta-G solvation = -23266.475908 eV Core-core repulsion = 19829.470049 eV Total energy + Delta-G solvation = -3437.005859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.05212 -39.19933 -37.62082 -37.09311 -33.92772 -33.48177 -32.13741 -30.91355 -27.82160 -27.65797 -27.09377 -25.50633 -23.73335 -23.21000 -21.79158 -21.21219 -19.58910 -18.89715 -17.73397 -17.39159 -16.71544 -16.26099 -15.29313 -15.07081 -14.93742 -14.56500 -14.39856 -14.34007 -13.89033 -13.69618 -13.08985 -12.84180 -12.73371 -12.66439 -12.52997 -12.14847 -12.03752 -11.84019 -11.44676 -11.42302 -11.19540 -11.17346 -10.82775 -10.50677 -10.34971 -10.23102 -9.98645 -9.63468 -9.47441 -9.22285 -8.69985 -8.59733 -8.41646 -6.15896 -4.21008 1.23825 1.72619 2.85214 3.27759 3.34132 3.38102 3.43288 3.48687 4.08193 4.31004 4.38946 4.50850 4.52400 4.77687 4.91364 5.02121 5.11587 5.19605 5.24561 5.35021 5.39813 5.41035 5.50511 5.52827 5.62480 5.66061 5.77836 5.88568 5.90586 5.95438 5.97988 6.02776 6.14786 6.39612 6.43102 6.67079 6.90492 6.99757 7.05358 7.65669 7.89246 8.16383 8.40550 8.52759 8.84819 9.46462 10.95529 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.003484 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.378907 B = 8034.177205 C = 8126.552904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 C -0.141 4.141 4 C -0.148 4.148 5 C -0.031 4.031 6 C -0.179 4.179 7 C -0.017 4.017 8 C 0.588 3.412 9 O -0.539 6.539 10 N -0.682 5.682 11 C 0.153 3.847 12 C -0.018 4.018 13 C -0.492 4.492 14 H 0.079 0.921 15 C 0.080 3.920 16 N -0.894 5.894 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.259 1.259 21 C -0.178 4.178 22 C -0.192 4.192 23 N -0.328 5.328 24 O 0.124 5.876 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.177 0.823 35 H 0.411 0.589 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.266 0.734 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 14.963 15.846 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 C -0.199 4.199 4 C -0.205 4.205 5 C -0.094 4.094 6 C -0.201 4.201 7 C -0.177 4.177 8 C 0.371 3.629 9 O -0.416 6.416 10 N -0.331 5.331 11 C 0.030 3.970 12 C -0.019 4.019 13 C -0.529 4.529 14 H 0.097 0.903 15 C -0.123 4.123 16 N -0.530 5.530 17 Si 0.708 3.292 18 H -0.201 1.201 19 H -0.221 1.221 20 H -0.184 1.184 21 C -0.215 4.215 22 C -0.230 4.230 23 N -0.028 5.028 24 O 0.048 5.952 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.194 0.806 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.121 14.253 15.054 20.731 hybrid contribution -0.507 0.562 -0.967 1.228 sum -0.628 14.814 14.087 20.452 Atomic orbital electron populations 1.21955 0.92078 1.03056 1.02894 1.19159 0.96081 0.94322 0.88848 1.21948 1.01801 0.93242 1.02899 1.21911 1.01962 1.00831 0.95809 1.24404 0.97082 0.90479 0.97421 1.22319 1.04563 1.02587 0.90633 1.23642 1.01619 0.95810 0.96600 1.16906 0.80200 0.82053 0.83731 1.90753 1.44957 1.43647 1.62244 1.45754 1.48578 1.29328 1.09469 1.21289 1.00817 0.96705 0.78148 1.19610 0.88947 0.95122 0.98218 1.20189 1.26540 1.00756 1.05407 0.90335 1.24978 0.94590 0.94391 0.98356 1.69883 1.29541 1.17693 1.35922 0.86854 0.77102 0.81198 0.83999 1.20144 1.22066 1.18388 1.22853 0.97559 1.01054 1.00033 1.22976 1.07344 1.01362 0.91327 1.74233 1.18608 1.20214 0.89780 1.84785 1.50817 1.35981 1.23574 0.91801 0.91737 0.91102 0.91098 0.91914 0.91770 0.91620 0.91697 0.91416 0.80565 0.75370 0.91032 0.93470 0.92428 0.90858 0.89252 0.88953 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.36 37.16 0.31 -0.64 16 2 C 0.02 0.13 0.94 -155.66 -0.15 -0.02 16 3 C -0.14 -0.89 8.36 37.16 0.31 -0.58 16 4 C -0.15 -0.98 8.07 37.16 0.30 -0.68 16 5 C -0.03 -0.35 5.76 -35.35 -0.20 -0.55 16 6 C -0.18 -2.40 10.41 -39.07 -0.41 -2.81 16 7 C -0.02 -0.29 7.19 -82.53 -0.59 -0.89 16 8 C 0.59 11.75 7.84 -12.11 -0.09 11.65 16 9 O -0.54 -11.92 16.94 5.37 0.09 -11.83 16 10 N -0.68 -13.96 5.45 -61.10 -0.33 -14.29 16 11 C 0.15 3.33 5.23 -4.04 -0.02 3.31 16 12 C -0.02 -0.40 0.85 -155.66 -0.13 -0.53 16 13 C -0.49 -13.31 9.29 -34.44 -0.32 -13.63 16 14 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 16 N -0.89 -26.95 13.96 55.43 0.77 -26.17 16 17 Si 0.88 21.70 24.76 -169.99 -4.21 17.49 16 18 H -0.28 -6.56 7.01 56.52 0.40 -6.17 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.26 -6.15 5.99 56.52 0.34 -5.82 16 21 C -0.18 -3.48 9.96 -26.70 -0.27 -3.75 16 22 C -0.19 -3.98 7.59 -26.70 -0.20 -4.18 16 23 N -0.33 -5.39 11.85 33.29 0.39 -5.00 16 24 O 0.12 1.70 10.65 17.24 0.18 1.88 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.44 8.03 -51.93 -0.42 0.03 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.03 -51.93 -0.42 -0.01 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.41 8.23 8.21 -40.82 -0.34 7.89 16 36 H 0.07 1.71 6.75 -51.93 -0.35 1.36 16 37 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 41 H 0.09 2.00 7.07 -51.93 -0.37 1.63 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -31.51 351.05 -5.95 -37.47 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.58 Total: 6.28 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -1.56 Total: -11.12 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.83 Total: -45.46 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.27 Total: -9.95 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.21 Total: 17.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.51 -5.95 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431154363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.811 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds