Wall clock time and date at job start Tue Mar 31 2020 06:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47546 * 2 1 4 4 C 1.53000 * 109.46924 * 119.99985 * 2 1 3 5 5 C 1.50699 * 109.47106 * 239.99799 * 2 1 3 6 6 C 1.35324 * 126.66563 * 60.00240 * 5 2 1 7 7 C 1.42271 * 103.92007 * 180.02562 * 6 5 2 8 8 C 1.48329 * 126.93399 * 180.02562 * 7 6 5 9 9 O 1.21498 * 119.99931 * 356.72805 * 8 7 6 10 10 N 1.34773 * 120.00126 * 176.73174 * 8 7 6 11 11 C 1.46500 * 120.00305 * 185.11294 * 10 8 7 12 12 C 1.53003 * 109.46977 * 184.37160 * 11 10 8 13 13 C 1.50701 * 115.55035 * 64.92778 * 12 11 10 14 14 H 1.07997 * 119.99814 * 266.89981 * 13 12 11 15 15 C 1.37882 * 119.99935 * 86.90335 * 13 12 11 16 16 N 1.31509 * 119.99789 * 180.92122 * 15 13 12 17 17 Si 1.86800 * 120.00032 * 0.92219 * 15 13 12 18 18 H 1.48496 * 109.47300 * 84.92538 * 17 15 13 19 19 H 1.48504 * 109.46881 * 204.92560 * 17 15 13 20 20 H 1.48497 * 109.47021 * 324.92372 * 17 15 13 21 21 C 1.52994 * 117.49702 * 279.25686 * 12 11 10 22 22 C 1.52997 * 117.49495 * 210.59720 * 12 11 10 23 23 N 1.30984 * 106.12523 * 0.02562 * 7 6 5 24 24 O 1.20902 * 111.43881 * 359.70173 * 23 7 6 25 25 H 1.09000 * 109.47651 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47406 * 59.99681 * 1 2 3 27 27 H 1.09002 * 109.47218 * 300.00430 * 1 2 3 28 28 H 1.09002 * 109.47213 * 59.99567 * 3 2 1 29 29 H 1.09000 * 109.47605 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47166 * 300.00021 * 3 2 1 31 31 H 1.08998 * 109.47186 * 60.00045 * 4 2 1 32 32 H 1.08998 * 109.47363 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47575 * 299.99937 * 4 2 1 34 34 H 1.07997 * 128.03205 * 0.02562 * 6 5 2 35 35 H 0.97001 * 119.99741 * 5.11582 * 10 8 7 36 36 H 1.08998 * 109.46751 * 304.36553 * 11 10 8 37 37 H 1.08993 * 109.47224 * 64.36506 * 11 10 8 38 38 H 0.96997 * 119.99719 * 180.02562 * 16 15 13 39 39 H 1.08997 * 117.49923 * 359.97438 * 21 12 11 40 40 H 1.08997 * 117.50158 * 145.02314 * 21 12 11 41 41 H 1.09001 * 117.49847 * 214.98248 * 22 12 11 42 42 H 1.09002 * 117.50072 * 359.97378 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0323 -0.7104 -1.2304 6 6 1.7900 -0.3677 -2.5169 7 6 2.4861 -1.3534 -3.2706 8 6 2.5602 -1.4576 -4.7484 9 8 1.9378 -0.6800 -5.4442 10 7 3.3177 -2.4150 -5.3193 11 6 3.4808 -2.4493 -6.7748 12 6 4.2904 -3.6865 -7.1683 13 6 3.6325 -5.0118 -6.8820 14 1 3.8302 -5.5229 -5.9514 15 6 2.7784 -5.5719 -7.8083 16 7 2.1903 -6.7196 -7.5508 17 14 2.4567 -4.7004 -9.4289 18 1 3.5199 -5.0571 -10.4023 19 1 1.1359 -5.1197 -9.9627 20 1 2.4586 -3.2317 -9.2100 21 6 5.8120 -3.6085 -7.0295 22 6 5.1677 -3.5885 -8.4179 23 7 3.0484 -2.1501 -2.3961 24 8 2.8093 -1.8018 -1.2633 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 -1.7489 1.2493 32 1 3.1299 -0.7217 1.2491 33 1 1.6766 -0.2075 2.1392 34 1 1.2043 0.4613 -2.8857 35 1 3.7550 -3.0814 -4.7664 36 1 2.5003 -2.4907 -7.2493 37 1 4.0056 -1.5521 -7.1029 38 1 1.5897 -7.1137 -8.2025 39 1 6.2363 -2.6757 -6.6583 40 1 6.3374 -4.5158 -6.7315 41 1 5.2694 -4.4828 -9.0328 42 1 5.1678 -2.6428 -8.9599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431154363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:43 Heat of formation + Delta-G solvation = 15.684697 kcal Electronic energy + Delta-G solvation = -23267.371781 eV Core-core repulsion = 19829.470049 eV Total energy + Delta-G solvation = -3437.901732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.23303 -40.81382 -38.81810 -38.27698 -35.37668 -34.89617 -34.26471 -31.97325 -28.95770 -28.21760 -28.14692 -27.46518 -25.12578 -24.24439 -23.40775 -22.30844 -21.29407 -20.41697 -18.92120 -18.64064 -18.21958 -17.78283 -17.03769 -16.81318 -16.24361 -15.89338 -15.48141 -15.05711 -14.97137 -14.83856 -14.68858 -14.61112 -14.39316 -13.88355 -13.22049 -13.19035 -13.13305 -12.70555 -12.69072 -12.54651 -12.25841 -12.21810 -12.04720 -12.00529 -11.77484 -11.72721 -11.58826 -11.49682 -11.04659 -10.71750 -10.48526 -10.44880 -10.10258 -8.34131 -6.42209 0.01152 0.62130 1.32037 1.36838 1.46637 1.79527 1.97426 2.01652 2.33059 2.84110 3.00425 3.16559 3.39656 3.81141 3.92105 3.94289 3.97589 4.03334 4.23951 4.28599 4.35162 4.40860 4.42134 4.71317 4.80194 4.81358 4.82552 4.82735 4.90972 5.02544 5.02743 5.03594 5.12107 5.21166 5.30291 5.31569 5.41350 5.44487 5.44724 5.63776 6.22487 6.33572 6.66464 6.88274 7.02461 7.28588 8.80994 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.003484 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.378907 B = 8034.177205 C = 8126.552904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.018 3.982 3 C -0.141 4.141 4 C -0.149 4.149 5 C -0.009 4.009 6 C -0.185 4.185 7 C -0.045 4.045 8 C 0.588 3.412 9 O -0.564 6.564 10 N -0.687 5.687 11 C 0.161 3.839 12 C -0.045 4.045 13 C -0.485 4.485 14 H 0.037 0.963 15 C 0.024 3.976 16 N -0.945 5.945 17 Si 0.935 3.065 18 H -0.257 1.257 19 H -0.302 1.302 20 H -0.243 1.243 21 C -0.154 4.154 22 C -0.185 4.185 23 N -0.350 5.350 24 O 0.133 5.867 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.192 0.808 35 H 0.410 0.590 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.265 0.735 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 17.724 16.739 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 C -0.198 4.198 4 C -0.206 4.206 5 C -0.073 4.073 6 C -0.208 4.208 7 C -0.203 4.203 8 C 0.373 3.627 9 O -0.443 6.443 10 N -0.335 5.335 11 C 0.038 3.962 12 C -0.046 4.046 13 C -0.522 4.522 14 H 0.055 0.945 15 C -0.174 4.174 16 N -0.585 5.585 17 Si 0.760 3.240 18 H -0.182 1.182 19 H -0.229 1.229 20 H -0.166 1.166 21 C -0.191 4.191 22 C -0.223 4.223 23 N -0.049 5.049 24 O 0.055 5.945 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.209 0.791 35 H 0.246 0.754 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.458 17.020 15.941 23.324 hybrid contribution -0.664 -0.311 -1.046 1.277 sum -0.206 16.709 14.895 22.385 Atomic orbital electron populations 1.21995 0.91036 1.02837 1.04149 1.19458 0.96744 0.94829 0.87313 1.21978 1.01594 0.92067 1.04139 1.21948 1.01827 1.00609 0.96208 1.25181 0.94870 0.88839 0.98403 1.22517 1.04814 1.02590 0.90850 1.23452 1.03805 0.97756 0.95266 1.17226 0.79261 0.81237 0.84989 1.90720 1.45834 1.44473 1.63308 1.45786 1.48952 1.29630 1.09152 1.21101 0.99422 0.97004 0.78715 1.19433 0.90685 0.93152 1.01365 1.20343 1.26079 1.02330 1.03477 0.94482 1.25799 0.94638 0.94980 1.02031 1.70029 1.31234 1.19821 1.37395 0.85959 0.76950 0.80943 0.80116 1.18219 1.22908 1.16639 1.22887 0.94800 1.02385 0.99069 1.23052 1.05550 1.02405 0.91245 1.74230 1.19344 1.20814 0.90482 1.84754 1.50728 1.36610 1.22395 0.92784 0.91932 0.88477 0.88569 0.92326 0.91893 0.92420 0.91998 0.88890 0.79061 0.75401 0.93675 0.91176 0.92559 0.87794 0.89712 0.90019 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.36 71.98 0.60 -0.94 16 2 C 0.02 0.23 0.94 -52.93 -0.05 0.18 16 3 C -0.14 -1.34 8.36 71.98 0.60 -0.74 16 4 C -0.15 -1.58 8.07 71.98 0.58 -1.00 16 5 C -0.01 -0.20 5.76 25.01 0.14 -0.06 16 6 C -0.19 -4.82 10.41 22.60 0.24 -4.59 16 7 C -0.05 -1.55 7.19 42.96 0.31 -1.24 16 8 C 0.59 23.70 7.84 86.93 0.68 24.39 16 9 O -0.56 -25.04 16.94 -3.71 -0.06 -25.11 16 10 N -0.69 -28.29 5.45 -465.51 -2.54 -30.83 16 11 C 0.16 6.86 5.23 86.38 0.45 7.31 16 12 C -0.05 -2.00 0.85 -52.93 -0.04 -2.05 16 13 C -0.48 -26.92 9.29 25.60 0.24 -26.69 16 14 H 0.04 2.30 8.06 -2.91 -0.02 2.27 16 15 C 0.02 1.36 5.47 84.66 0.46 1.83 16 16 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 17 Si 0.94 44.78 24.76 68.60 1.70 46.48 16 18 H -0.26 -11.50 7.01 99.48 0.70 -10.80 16 19 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 20 H -0.24 -10.90 5.99 99.48 0.60 -10.31 16 21 C -0.15 -5.70 9.96 30.62 0.30 -5.39 16 22 C -0.18 -7.14 7.59 30.62 0.23 -6.91 16 23 N -0.35 -11.57 11.85 -49.52 -0.59 -12.16 16 24 O 0.13 3.57 10.65 71.88 0.77 4.33 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.71 8.03 -2.39 -0.02 0.70 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.64 8.03 -2.39 -0.02 0.62 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.41 16.83 8.21 -92.71 -0.76 16.07 16 36 H 0.04 2.15 6.75 -2.39 -0.02 2.13 16 37 H 0.07 2.66 8.09 -2.39 -0.02 2.64 16 38 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.08 3.35 7.07 -2.39 -0.02 3.33 16 42 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -70.67 351.05 4.46 -66.21 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.14 Total: 25.87 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 4.75 Total: -15.89 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -2.83 Total: -101.89 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.70 Total: -20.77 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.70 Total: 46.48 kcal Total: -70.67 4.46 -66.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431154363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.892 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds