Wall clock time and date at job start Tue Mar 31 2020 07:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47163 * 2 1 4 4 O 1.42905 * 109.46932 * 240.00499 * 2 1 3 5 5 C 1.52999 * 109.47416 * 120.00434 * 2 1 3 6 6 C 1.52995 * 109.47290 * 184.99644 * 5 2 1 7 7 N 1.46500 * 109.47329 * 179.97438 * 6 5 2 8 8 C 1.34773 * 120.00345 * 179.97438 * 7 6 5 9 9 O 1.21589 * 119.99727 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00256 * 180.02562 * 8 7 6 11 11 C 1.39953 * 119.99927 * 184.31484 * 10 8 7 12 12 C 1.39286 * 119.94529 * 144.78959 * 11 10 8 13 13 C 1.38492 * 120.43064 * 179.97438 * 12 11 10 14 14 C 1.37689 * 120.31596 * 0.29407 * 13 12 11 15 15 C 1.40741 * 119.88547 * 359.48005 * 14 13 12 16 16 C 1.41404 * 120.20892 * 180.26751 * 15 14 13 17 17 H 1.07995 * 119.99930 * 214.94201 * 16 15 14 18 18 C 1.39934 * 120.00185 * 34.95397 * 16 15 14 19 19 N 1.30831 * 119.99834 * 355.53859 * 18 16 15 20 20 Si 1.86792 * 120.00114 * 175.54459 * 18 16 15 21 21 H 1.48495 * 109.47461 * 59.99745 * 20 18 16 22 22 H 1.48508 * 109.47070 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47234 * 299.99315 * 20 18 16 24 24 C 1.38233 * 119.94659 * 324.80426 * 11 10 8 25 25 H 1.09003 * 109.47073 * 299.99864 * 1 2 3 26 26 H 1.09008 * 109.47477 * 59.99677 * 1 2 3 27 27 H 1.09003 * 109.47448 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46933 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46970 * 299.99973 * 3 2 1 30 30 H 1.08991 * 109.47186 * 60.00799 * 3 2 1 31 31 H 0.96704 * 113.99909 * 299.99771 * 4 2 1 32 32 H 1.08997 * 109.46934 * 64.99483 * 5 2 1 33 33 H 1.09005 * 109.46647 * 304.99992 * 5 2 1 34 34 H 1.09005 * 109.47064 * 60.00283 * 6 5 2 35 35 H 1.08997 * 109.47661 * 300.00101 * 6 5 2 36 36 H 0.97003 * 120.00003 * 0.02562 * 7 6 5 37 37 H 0.97003 * 119.99360 * 4.31093 * 10 8 7 38 38 H 1.07995 * 119.78977 * 359.97438 * 12 11 10 39 39 H 1.07998 * 119.84241 * 180.02562 * 13 12 11 40 40 H 1.08002 * 120.05321 * 179.72210 * 14 13 12 41 41 H 0.96998 * 119.99948 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.16305 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6134 1.3135 7 7 4.0531 -1.3036 2.5099 8 6 5.3740 -1.3398 2.7751 9 8 6.1603 -0.7992 2.0216 10 7 5.8233 -1.9752 3.8755 11 6 7.1843 -1.9362 4.1994 12 6 7.5805 -1.8935 5.5340 13 6 8.9245 -1.8553 5.8659 14 6 9.8844 -1.8530 4.8787 15 6 9.4991 -1.9007 3.5259 16 6 10.4793 -1.9044 2.5067 17 1 10.2877 -1.3994 1.5715 18 6 11.6974 -2.5625 2.7098 19 7 11.9650 -3.0994 3.8725 20 14 12.9415 -2.6743 1.3209 21 1 13.3384 -1.3065 0.9006 22 1 14.1404 -3.4154 1.7887 23 1 12.3351 -3.3896 0.1695 24 6 8.1332 -1.9399 3.1942 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.7209 -1.5952 -1.2331 32 1 1.7516 -1.7715 1.2054 33 1 1.6053 -0.2618 2.1369 34 1 3.8532 0.4369 1.3573 35 1 3.9994 -1.0729 0.4258 36 1 3.4258 -1.7352 3.1109 37 1 5.2033 -2.4594 4.4430 38 1 6.8348 -1.8902 6.3152 39 1 9.2211 -1.8227 6.9039 40 1 10.9312 -1.8185 5.1422 41 1 12.8095 -3.5553 4.0133 42 1 7.8270 -1.9732 2.1590 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455913789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:18 Heat of formation + Delta-G solvation = -68.717954 kcal Electronic energy + Delta-G solvation = -22708.933470 eV Core-core repulsion = 19267.371764 eV Total energy + Delta-G solvation = -3441.561706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95461 -38.85976 -37.27856 -34.94705 -34.24681 -33.03944 -32.68443 -29.71085 -29.54776 -27.74974 -27.54373 -25.19938 -23.59252 -21.48690 -20.78325 -20.63041 -19.94710 -18.02971 -17.55130 -16.53929 -16.04274 -15.87016 -15.32722 -15.10211 -14.80445 -14.48808 -14.08676 -13.97964 -13.85330 -13.08336 -12.94043 -12.77220 -12.54389 -12.41404 -12.13174 -12.07587 -11.75844 -11.63134 -11.46505 -11.10463 -11.02883 -10.92695 -10.85110 -10.37767 -10.29450 -10.15043 -9.64008 -9.34895 -9.15152 -8.84076 -8.81717 -7.28841 -6.80857 -6.48416 -4.28847 2.80504 2.93712 3.09253 3.15903 3.20089 3.28693 3.76758 3.90964 4.07463 4.39454 4.42633 4.57375 4.75092 4.80436 4.94180 5.02444 5.26185 5.31265 5.44221 5.57094 5.62235 5.73442 5.76072 5.79439 5.98018 6.06912 6.28921 6.43256 6.61981 6.85248 6.86464 7.12139 7.21120 7.35387 7.39427 7.44243 7.78844 7.88684 8.07021 8.22993 8.35857 8.50527 8.78696 9.00005 9.07702 9.12289 10.40631 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.003086 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.194700 B = 9072.492924 C =10126.397109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.131 3.869 3 C -0.147 4.147 4 O -0.557 6.557 5 C -0.157 4.157 6 C 0.140 3.860 7 N -0.754 5.754 8 C 0.696 3.304 9 O -0.565 6.565 10 N -0.682 5.682 11 C 0.157 3.843 12 C -0.251 4.251 13 C -0.100 4.100 14 C -0.161 4.161 15 C 0.113 3.887 16 C -0.461 4.461 17 H 0.075 0.925 18 C 0.070 3.930 19 N -0.815 5.815 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.198 4.198 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.375 0.625 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.390 0.610 37 H 0.393 0.607 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.276 0.724 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.516 2.289 -2.786 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 C -0.204 4.204 4 O -0.363 6.363 5 C -0.195 4.195 6 C 0.016 3.984 7 N -0.411 5.411 8 C 0.397 3.603 9 O -0.440 6.440 10 N -0.328 5.328 11 C 0.065 3.935 12 C -0.273 4.273 13 C -0.119 4.119 14 C -0.181 4.181 15 C 0.110 3.890 16 C -0.492 4.492 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.443 5.443 20 Si 0.740 3.260 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.219 4.219 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.223 0.777 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.223 0.777 37 H 0.226 0.774 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.146 0.854 41 H 0.087 0.913 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.336 3.282 -3.517 19.926 hybrid contribution -0.458 -1.241 0.258 1.348 sum -19.795 2.041 -3.259 20.165 Atomic orbital electron populations 1.22491 0.95587 1.02448 1.02954 1.21115 0.92411 0.93261 0.84246 1.21871 1.02929 0.93208 1.02419 1.86615 1.77194 1.28860 1.43604 1.22500 0.96029 1.01583 0.99366 1.21167 0.92168 0.97665 0.87382 1.45160 1.05953 1.61484 1.28489 1.15994 0.82194 0.79951 0.82210 1.90975 1.54134 1.50128 1.48784 1.42550 1.08769 1.54744 1.26742 1.17260 0.79963 1.02712 0.93555 1.20099 0.95696 1.18754 0.92749 1.20525 0.92508 1.01259 0.97622 1.21623 0.99276 1.04753 0.92456 1.17568 0.90760 0.87764 0.92876 1.19492 0.98220 1.30284 1.01197 0.90639 1.25848 0.98256 0.93828 0.96469 1.69759 1.23365 1.28570 1.22598 0.86265 0.79133 0.79215 0.81395 1.19068 1.20526 1.19150 1.21312 0.92260 1.10633 0.97699 0.91503 0.91619 0.92320 0.90912 0.91837 0.91082 0.77733 0.91020 0.90407 0.91350 0.91043 0.77685 0.77368 0.89364 0.89006 0.85377 0.91271 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 8.81 37.15 0.33 -0.70 16 2 C 0.13 1.02 1.09 -90.63 -0.10 0.92 16 3 C -0.15 -1.25 8.35 37.16 0.31 -0.94 16 4 O -0.56 -5.15 12.52 -35.23 -0.44 -5.59 16 5 C -0.16 -1.19 4.60 -26.73 -0.12 -1.31 16 6 C 0.14 1.67 5.08 -4.04 -0.02 1.65 16 7 N -0.75 -9.77 5.56 -65.23 -0.36 -10.13 16 8 C 0.70 13.06 8.40 -86.92 -0.73 12.33 16 9 O -0.56 -13.47 13.79 5.29 0.07 -13.39 16 10 N -0.68 -12.52 5.34 -14.27 -0.08 -12.59 16 11 C 0.16 3.66 6.29 -83.76 -0.53 3.14 16 12 C -0.25 -5.63 9.97 -39.10 -0.39 -6.02 16 13 C -0.10 -2.38 10.02 -39.69 -0.40 -2.78 16 14 C -0.16 -4.34 8.67 -38.84 -0.34 -4.68 16 15 C 0.11 3.21 5.55 -106.85 -0.59 2.62 16 16 C -0.46 -13.10 9.04 -37.74 -0.34 -13.45 16 17 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 18 C 0.07 1.87 5.42 -17.34 -0.09 1.77 16 19 N -0.82 -21.95 10.61 55.55 0.59 -21.36 16 20 Si 0.91 20.00 29.56 -169.99 -5.03 14.97 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 C -0.20 -5.30 8.43 -38.69 -0.33 -5.63 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.75 6.35 -51.92 -0.33 0.42 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.38 2.14 9.05 45.56 0.41 2.55 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.90 6.35 -51.93 -0.33 0.57 16 35 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 36 H 0.39 3.63 8.49 -40.82 -0.35 3.28 16 37 H 0.39 5.50 8.84 -40.82 -0.36 5.14 16 38 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.13 3.56 6.15 -52.49 -0.32 3.24 16 41 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 42 H 0.11 3.19 6.23 -52.49 -0.33 2.87 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -33.81 346.94 -8.72 -42.53 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -5.36 Total: 13.42 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -3.34 Total: -13.09 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.15 Total: -44.08 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.37 Total: -18.98 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.81 -8.72 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455913789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.191 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds