Wall clock time and date at job start Tue Mar 31 2020 07:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47163 * 2 1 4 4 O 1.42905 * 109.46932 * 240.00499 * 2 1 3 5 5 C 1.52999 * 109.47416 * 120.00434 * 2 1 3 6 6 C 1.52995 * 109.47290 * 184.99644 * 5 2 1 7 7 N 1.46500 * 109.47329 * 179.97438 * 6 5 2 8 8 C 1.34773 * 120.00345 * 179.97438 * 7 6 5 9 9 O 1.21589 * 119.99727 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00256 * 180.02562 * 8 7 6 11 11 C 1.39953 * 119.99927 * 184.31484 * 10 8 7 12 12 C 1.39286 * 119.94529 * 144.78959 * 11 10 8 13 13 C 1.38492 * 120.43064 * 179.97438 * 12 11 10 14 14 C 1.37689 * 120.31596 * 0.29407 * 13 12 11 15 15 C 1.40741 * 119.88547 * 359.48005 * 14 13 12 16 16 C 1.41404 * 120.20892 * 180.26751 * 15 14 13 17 17 H 1.07995 * 119.99930 * 214.94201 * 16 15 14 18 18 C 1.39934 * 120.00185 * 34.95397 * 16 15 14 19 19 N 1.30831 * 119.99834 * 355.53859 * 18 16 15 20 20 Si 1.86792 * 120.00114 * 175.54459 * 18 16 15 21 21 H 1.48495 * 109.47461 * 59.99745 * 20 18 16 22 22 H 1.48508 * 109.47070 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47234 * 299.99315 * 20 18 16 24 24 C 1.38233 * 119.94659 * 324.80426 * 11 10 8 25 25 H 1.09003 * 109.47073 * 299.99864 * 1 2 3 26 26 H 1.09008 * 109.47477 * 59.99677 * 1 2 3 27 27 H 1.09003 * 109.47448 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46933 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46970 * 299.99973 * 3 2 1 30 30 H 1.08991 * 109.47186 * 60.00799 * 3 2 1 31 31 H 0.96704 * 113.99909 * 299.99771 * 4 2 1 32 32 H 1.08997 * 109.46934 * 64.99483 * 5 2 1 33 33 H 1.09005 * 109.46647 * 304.99992 * 5 2 1 34 34 H 1.09005 * 109.47064 * 60.00283 * 6 5 2 35 35 H 1.08997 * 109.47661 * 300.00101 * 6 5 2 36 36 H 0.97003 * 120.00003 * 0.02562 * 7 6 5 37 37 H 0.97003 * 119.99360 * 4.31093 * 10 8 7 38 38 H 1.07995 * 119.78977 * 359.97438 * 12 11 10 39 39 H 1.07998 * 119.84241 * 180.02562 * 13 12 11 40 40 H 1.08002 * 120.05321 * 179.72210 * 14 13 12 41 41 H 0.96998 * 119.99948 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.16305 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6134 1.3135 7 7 4.0531 -1.3036 2.5099 8 6 5.3740 -1.3398 2.7751 9 8 6.1603 -0.7992 2.0216 10 7 5.8233 -1.9752 3.8755 11 6 7.1843 -1.9362 4.1994 12 6 7.5805 -1.8935 5.5340 13 6 8.9245 -1.8553 5.8659 14 6 9.8844 -1.8530 4.8787 15 6 9.4991 -1.9007 3.5259 16 6 10.4793 -1.9044 2.5067 17 1 10.2877 -1.3994 1.5715 18 6 11.6974 -2.5625 2.7098 19 7 11.9650 -3.0994 3.8725 20 14 12.9415 -2.6743 1.3209 21 1 13.3384 -1.3065 0.9006 22 1 14.1404 -3.4154 1.7887 23 1 12.3351 -3.3896 0.1695 24 6 8.1332 -1.9399 3.1942 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.7209 -1.5952 -1.2331 32 1 1.7516 -1.7715 1.2054 33 1 1.6053 -0.2618 2.1369 34 1 3.8532 0.4369 1.3573 35 1 3.9994 -1.0729 0.4258 36 1 3.4258 -1.7352 3.1109 37 1 5.2033 -2.4594 4.4430 38 1 6.8348 -1.8902 6.3152 39 1 9.2211 -1.8227 6.9039 40 1 10.9312 -1.8185 5.1422 41 1 12.8095 -3.5553 4.0133 42 1 7.8270 -1.9732 2.1590 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455913789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:17 Heat of formation + Delta-G solvation = -94.318564 kcal Electronic energy + Delta-G solvation = -22710.043595 eV Core-core repulsion = 19267.371764 eV Total energy + Delta-G solvation = -3442.671831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45817 -39.68535 -39.01253 -36.31499 -35.90176 -34.79113 -33.58701 -31.70118 -30.69701 -29.11881 -28.28968 -27.22163 -24.63412 -23.10027 -22.64242 -21.78243 -21.12394 -19.61105 -19.24949 -17.58603 -17.28171 -17.12795 -16.82372 -16.40774 -16.26490 -15.99931 -15.51762 -15.16796 -14.90957 -14.67626 -14.57688 -13.95074 -13.70816 -13.56049 -13.18708 -13.04434 -12.96412 -12.87104 -12.79323 -12.73704 -12.44112 -12.24027 -12.14419 -12.04226 -11.59154 -11.52419 -11.21944 -11.07972 -10.84637 -10.66922 -10.10427 -9.28967 -8.69430 -8.44975 -6.39947 0.95232 1.03783 1.36067 1.47117 1.50916 1.68960 2.18706 2.24065 2.81183 3.24535 3.39680 3.70745 3.77166 3.89416 4.03418 4.23239 4.36300 4.50242 4.61237 4.63894 4.74923 4.87462 4.89449 4.98254 5.03263 5.07561 5.12949 5.15604 5.17156 5.22066 5.31635 5.37223 5.38155 5.48290 5.74952 5.86373 6.07290 6.17579 6.20571 6.40593 6.73535 6.92109 6.98776 7.03539 7.13156 7.61428 8.43374 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.003086 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.194700 B = 9072.492924 C =10126.397109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 C -0.152 4.152 4 O -0.582 6.582 5 C -0.142 4.142 6 C 0.140 3.860 7 N -0.725 5.725 8 C 0.690 3.310 9 O -0.622 6.622 10 N -0.668 5.668 11 C 0.165 3.835 12 C -0.236 4.236 13 C -0.097 4.097 14 C -0.187 4.187 15 C 0.081 3.919 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.031 3.969 19 N -0.839 5.839 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.260 1.260 23 H -0.267 1.267 24 C -0.225 4.225 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.389 0.611 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.414 0.586 37 H 0.419 0.581 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.285 0.715 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.008 1.592 -1.259 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.087 3.913 3 C -0.209 4.209 4 O -0.391 6.391 5 C -0.180 4.180 6 C 0.016 3.984 7 N -0.382 5.382 8 C 0.391 3.609 9 O -0.501 6.501 10 N -0.317 5.317 11 C 0.071 3.929 12 C -0.257 4.257 13 C -0.116 4.116 14 C -0.207 4.207 15 C 0.078 3.922 16 C -0.537 4.537 17 H 0.076 0.924 18 C -0.181 4.181 19 N -0.467 5.467 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.192 1.192 24 C -0.247 4.247 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.239 0.761 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.251 0.749 37 H 0.257 0.743 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.130 0.870 41 H 0.096 0.904 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.933 2.551 -1.946 22.166 hybrid contribution 0.152 -0.992 -0.164 1.017 sum -21.781 1.559 -2.110 21.938 Atomic orbital electron populations 1.22412 0.93420 1.03547 1.03363 1.21209 0.93894 0.92409 0.83798 1.21930 1.01230 0.94495 1.03231 1.86588 1.77857 1.30174 1.44441 1.22442 0.92089 1.03247 1.00236 1.21239 0.95285 0.96174 0.85720 1.44907 1.04078 1.60389 1.28848 1.16281 0.83553 0.79515 0.81600 1.90958 1.56196 1.52383 1.50574 1.42275 1.07355 1.54917 1.27152 1.17317 0.81590 1.00627 0.93350 1.20542 0.96159 1.15803 0.93207 1.20909 0.92666 0.99461 0.98581 1.21562 0.99402 1.07014 0.92701 1.17888 0.91573 0.88886 0.93833 1.19648 1.00288 1.32683 1.01130 0.92367 1.26662 0.99481 0.92744 0.99184 1.69813 1.24191 1.28608 1.24043 0.85214 0.76842 0.79429 0.77887 1.18669 1.18426 1.19155 1.21234 0.92901 1.13052 0.97518 0.90212 0.92122 0.90880 0.93577 0.92034 0.89352 0.76132 0.88880 0.88189 0.93008 0.93670 0.74864 0.74340 0.84623 0.85611 0.87001 0.90431 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.81 71.98 0.63 -0.84 16 2 C 0.13 1.77 1.09 -10.80 -0.01 1.76 16 3 C -0.15 -2.50 8.35 71.98 0.60 -1.90 16 4 O -0.58 -10.37 12.52 -148.98 -1.86 -12.24 16 5 C -0.14 -1.77 4.60 30.59 0.14 -1.63 16 6 C 0.14 3.24 5.08 86.38 0.44 3.68 16 7 N -0.72 -17.50 5.56 -478.54 -2.66 -20.16 16 8 C 0.69 25.62 8.40 179.05 1.50 27.13 16 9 O -0.62 -30.89 13.79 -3.99 -0.06 -30.95 16 10 N -0.67 -23.36 5.34 -317.32 -1.69 -25.06 16 11 C 0.17 7.58 6.29 38.10 0.24 7.82 16 12 C -0.24 -9.89 9.97 22.58 0.23 -9.67 16 13 C -0.10 -4.49 10.02 22.20 0.22 -4.27 16 14 C -0.19 -10.31 8.67 22.75 0.20 -10.11 16 15 C 0.08 4.81 5.55 -21.31 -0.12 4.69 16 16 C -0.51 -30.62 9.04 23.46 0.21 -30.41 16 17 H 0.06 3.55 7.85 -2.91 -0.02 3.53 16 18 C 0.03 1.71 5.42 85.25 0.46 2.17 16 19 N -0.84 -46.35 10.61 21.82 0.23 -46.12 16 20 Si 0.99 42.14 29.56 68.60 2.03 44.17 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 C -0.23 -12.62 8.43 22.85 0.19 -12.43 16 25 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.99 6.35 -2.38 -0.02 0.98 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.39 3.95 9.05 -74.05 -0.67 3.28 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.05 1.40 6.35 -2.38 -0.02 1.38 16 35 H 0.04 1.30 7.82 -2.39 -0.02 1.29 16 36 H 0.41 6.17 8.49 -92.71 -0.79 5.39 16 37 H 0.42 10.19 8.84 -92.71 -0.82 9.37 16 38 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.11 6.45 6.15 -2.91 -0.02 6.43 16 41 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 42 H 0.09 5.28 6.23 -2.91 -0.02 5.27 16 Total: -1.00 -79.56 346.94 -0.29 -79.85 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -1.22 Total: 34.52 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.94 Total: -24.01 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -4.12 Total: -91.34 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.92 Total: -43.18 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -79.56 -0.29 -79.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455913789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.473 kcal (2) G-P(sol) polarization free energy of solvation -79.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds