Wall clock time and date at job start Tue Mar 31 2020 07:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00133 * 2 1 4 4 C 1.52995 * 109.47302 * 60.00290 * 3 2 1 5 5 C 1.52997 * 109.47691 * 300.00214 * 3 2 1 6 6 C 1.53008 * 109.47052 * 180.02562 * 3 2 1 7 7 N 1.46496 * 109.47113 * 64.99850 * 6 3 2 8 8 C 1.34779 * 120.00026 * 179.97438 * 7 6 3 9 9 O 1.21578 * 119.99955 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99980 * 180.02562 * 8 7 6 11 11 C 1.39953 * 119.99903 * 174.29065 * 10 8 7 12 12 C 1.39278 * 119.94776 * 145.42240 * 11 10 8 13 13 C 1.38489 * 120.43308 * 179.97438 * 12 11 10 14 14 C 1.37683 * 120.31833 * 0.29976 * 13 12 11 15 15 C 1.40741 * 119.88051 * 359.43220 * 14 13 12 16 16 C 1.41414 * 120.20785 * 180.31642 * 15 14 13 17 17 H 1.08000 * 119.99316 * 214.42503 * 16 15 14 18 18 C 1.39928 * 120.00321 * 34.42160 * 16 15 14 19 19 N 1.30833 * 119.99647 * 5.54067 * 18 16 15 20 20 Si 1.86798 * 120.00358 * 185.53839 * 18 16 15 21 21 H 1.48503 * 109.46824 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47266 * 119.99875 * 20 18 16 23 23 H 1.48495 * 109.47228 * 240.00446 * 20 18 16 24 24 C 1.38230 * 119.94722 * 325.39902 * 11 10 8 25 25 H 1.08998 * 109.47581 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46702 * 300.00111 * 1 2 3 27 27 H 1.09000 * 109.47215 * 59.99418 * 1 2 3 28 28 H 1.09001 * 109.47567 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47114 * 299.99809 * 4 3 2 30 30 H 1.09007 * 109.46895 * 59.99708 * 4 3 2 31 31 H 1.09006 * 109.47130 * 300.00648 * 5 3 2 32 32 H 1.09007 * 109.47073 * 59.99721 * 5 3 2 33 33 H 1.08994 * 109.47593 * 180.02562 * 5 3 2 34 34 H 1.09005 * 109.46656 * 305.00082 * 6 3 2 35 35 H 1.08992 * 109.46894 * 185.00337 * 6 3 2 36 36 H 0.97007 * 119.99842 * 0.02562 * 7 6 3 37 37 H 0.97005 * 120.00043 * 354.29167 * 10 8 7 38 38 H 1.08009 * 119.78558 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.84213 * 180.02562 * 13 12 11 40 40 H 1.07995 * 120.05688 * 179.70037 * 14 13 12 41 41 H 0.97001 * 119.99616 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.16114 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5589 2.0647 1.2492 5 6 1.5589 2.0648 -1.2491 6 6 3.5355 1.1845 -0.0006 7 7 3.9757 0.5643 -1.2527 8 6 5.2884 0.3563 -1.4767 9 8 6.1072 0.6831 -0.6395 10 7 5.6934 -0.2139 -2.6288 11 6 7.0593 -0.3212 -2.9142 12 6 7.5391 -1.4273 -3.6114 13 6 8.8887 -1.5435 -3.8996 14 6 9.7725 -0.5687 -3.4941 15 6 9.3013 0.5574 -2.7936 16 6 10.2019 1.5660 -2.3797 17 1 10.0346 2.0912 -1.4509 18 6 11.3097 1.8836 -3.1733 19 7 11.4542 1.3259 -4.3480 20 14 12.5822 3.1038 -2.5558 21 1 12.1904 3.5878 -1.2077 22 1 13.9078 2.4391 -2.4767 23 1 12.6602 4.2539 -3.4918 24 6 7.9300 0.6709 -2.5039 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 2.0026 3.0603 1.2495 29 1 0.4723 2.1508 1.2493 30 1 1.8806 1.5236 2.1392 31 1 1.8804 1.5238 -2.1392 32 1 0.4722 2.1509 -1.2492 33 1 2.0026 3.0603 -1.2494 34 1 3.8515 0.5680 0.8410 35 1 3.9786 2.1763 0.0890 36 1 3.3224 0.3039 -1.9209 37 1 5.0381 -0.5498 -3.2603 38 1 6.8542 -2.1995 -3.9295 39 1 9.2504 -2.4050 -4.4412 40 1 10.8247 -0.6659 -3.7169 41 1 12.2220 1.5463 -4.8983 42 1 7.5588 1.5294 -1.9638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455925183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:31 Heat of formation + Delta-G solvation = -54.837150 kcal Electronic energy + Delta-G solvation = -23046.189519 eV Core-core repulsion = 19605.229730 eV Total energy + Delta-G solvation = -3440.959789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10850 -39.13530 -37.24608 -34.89105 -34.22140 -32.97500 -32.23711 -29.71341 -28.33908 -27.84624 -27.36734 -25.53362 -25.13157 -21.63563 -20.78270 -20.36562 -19.90272 -18.00882 -17.64022 -16.79558 -16.03784 -15.50065 -15.39368 -15.13825 -14.92457 -14.58852 -14.30974 -14.00765 -13.50635 -13.35397 -13.03722 -12.80369 -12.77630 -12.48084 -12.31021 -12.07056 -11.81808 -11.64549 -11.57506 -11.08809 -11.07548 -10.86244 -10.82961 -10.37221 -10.13359 -9.91491 -9.58400 -9.37175 -9.16472 -8.89962 -8.80593 -7.28647 -6.79765 -6.53422 -4.27368 2.80320 2.94189 3.11308 3.16663 3.23267 3.26197 3.42234 3.81587 4.07036 4.37893 4.51946 4.59728 4.71856 4.80037 4.99163 5.02785 5.20157 5.23826 5.39781 5.41546 5.50436 5.61945 5.73841 5.75488 5.78763 5.92344 6.29516 6.44619 6.63849 6.86052 6.88394 6.91508 7.11213 7.17734 7.34041 7.43398 7.78610 7.89400 8.05203 8.21577 8.33991 8.52523 8.76675 8.99958 9.07293 9.13692 10.40206 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.003226 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.946600 B = 8678.111210 C = 9531.589513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.375 6.375 3 C 0.099 3.901 4 C -0.176 4.176 5 C -0.179 4.179 6 C 0.157 3.843 7 N -0.745 5.745 8 C 0.699 3.301 9 O -0.568 6.568 10 N -0.682 5.682 11 C 0.165 3.835 12 C -0.252 4.252 13 C -0.097 4.097 14 C -0.160 4.160 15 C 0.120 3.880 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.813 5.813 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.276 1.276 24 C -0.199 4.199 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.394 0.606 37 H 0.394 0.606 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.276 0.724 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.932 0.483 4.498 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.294 6.294 3 C 0.059 3.941 4 C -0.234 4.234 5 C -0.237 4.237 6 C 0.032 3.968 7 N -0.403 5.403 8 C 0.399 3.601 9 O -0.444 6.444 10 N -0.328 5.328 11 C 0.072 3.928 12 C -0.274 4.274 13 C -0.116 4.116 14 C -0.180 4.180 15 C 0.118 3.882 16 C -0.495 4.495 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.440 5.440 20 Si 0.736 3.264 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.202 1.202 24 C -0.221 4.221 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.229 0.771 37 H 0.227 0.773 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.135 0.865 41 H 0.087 0.913 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.923 0.665 5.111 19.613 hybrid contribution -0.391 0.457 -0.539 0.807 sum -19.314 1.122 4.572 19.880 Atomic orbital electron populations 1.22801 0.81588 1.02676 1.00145 1.88042 1.19436 1.26896 1.95016 1.21791 0.93271 0.83839 0.95174 1.22345 1.01950 1.01255 0.97850 1.22424 1.01768 1.01433 0.98028 1.21108 0.89800 0.99017 0.86873 1.45035 1.05993 1.67876 1.21418 1.15949 0.82322 0.79238 0.82598 1.90972 1.51830 1.56342 1.45258 1.42569 1.07322 1.62977 1.19980 1.17244 0.80313 0.95119 1.00098 1.20080 0.95712 0.98451 1.13124 1.20478 0.92761 0.98285 1.00076 1.21355 0.99164 0.93650 1.03801 1.17510 0.90395 0.91274 0.89056 1.19553 1.06065 1.17395 1.06480 0.90517 1.25834 0.97802 0.96432 0.94175 1.69796 1.27605 1.38085 1.08499 0.86221 0.80134 0.80124 0.79933 1.18557 1.19969 1.20154 1.21113 0.93054 0.98851 1.09087 0.89739 0.93792 0.93781 0.90882 0.91724 0.91211 0.91571 0.91944 0.90872 0.90863 0.90114 0.77117 0.77311 0.89258 0.88982 0.86451 0.91316 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.21 101.05 1.03 1.20 16 2 O -0.37 -3.79 10.29 -35.23 -0.36 -4.15 16 3 C 0.10 0.90 0.80 -90.62 -0.07 0.83 16 4 C -0.18 -1.30 8.25 37.16 0.31 -0.99 16 5 C -0.18 -1.38 8.02 37.16 0.30 -1.09 16 6 C 0.16 1.94 4.84 -4.04 -0.02 1.92 16 7 N -0.75 -10.31 5.19 -65.22 -0.34 -10.64 16 8 C 0.70 13.31 8.28 -86.91 -0.72 12.59 16 9 O -0.57 -13.52 14.13 5.30 0.07 -13.44 16 10 N -0.68 -12.79 5.34 -14.27 -0.08 -12.86 16 11 C 0.16 3.86 6.25 -83.77 -0.52 3.33 16 12 C -0.25 -5.70 9.97 -39.10 -0.39 -6.09 16 13 C -0.10 -2.32 10.02 -39.69 -0.40 -2.71 16 14 C -0.16 -4.30 8.62 -38.84 -0.33 -4.63 16 15 C 0.12 3.40 5.50 -106.85 -0.59 2.82 16 16 C -0.46 -13.12 9.04 -37.74 -0.34 -13.47 16 17 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 18 C 0.07 1.91 5.31 -17.34 -0.09 1.82 16 19 N -0.81 -21.88 10.97 55.55 0.61 -21.27 16 20 Si 0.91 19.81 29.56 -169.99 -5.03 14.79 16 21 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.20 -5.34 8.39 -38.69 -0.32 -5.66 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.26 6.42 -51.92 -0.33 -0.07 16 27 H 0.04 0.26 6.42 -51.93 -0.33 -0.07 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 32 H 0.06 0.40 6.54 -51.93 -0.34 0.06 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.39 4.41 7.01 -40.82 -0.29 4.13 16 37 H 0.39 5.75 8.84 -40.82 -0.36 5.39 16 38 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.12 3.24 6.48 -52.49 -0.34 2.90 16 41 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 42 H 0.11 2.97 6.51 -52.49 -0.34 2.63 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -32.88 342.75 -8.06 -40.95 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.94 Total: 11.60 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -2.17 Total: -10.12 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.19 Total: -44.78 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.29 Total: -17.60 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.88 -8.06 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455925183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.891 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds