Wall clock time and date at job start Tue Mar 31 2020 07:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 C 1.52996 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47214 * 305.00143 * 4 3 2 6 6 O 1.42907 * 109.46676 * 65.00498 * 4 3 2 7 7 C 1.52999 * 109.47242 * 185.00218 * 4 3 2 8 8 N 1.46503 * 109.47421 * 180.02562 * 7 4 3 9 9 C 1.34772 * 120.00025 * 179.97438 * 8 7 4 10 10 O 1.21581 * 120.00179 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99750 * 179.97438 * 9 8 7 12 12 C 1.39952 * 120.00189 * 174.84833 * 11 9 8 13 13 C 1.39285 * 119.94795 * 145.76618 * 12 11 9 14 14 C 1.38498 * 120.42931 * 180.02562 * 13 12 11 15 15 C 1.37682 * 120.32036 * 359.97438 * 14 13 12 16 16 C 1.40738 * 119.88333 * 0.02562 * 15 14 13 17 17 C 1.41409 * 120.21141 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00275 * 205.18148 * 17 16 15 19 19 C 1.39930 * 119.99782 * 25.17242 * 17 16 15 20 20 N 1.30827 * 119.99927 * 16.79973 * 19 17 16 21 21 Si 1.86800 * 120.00216 * 196.79622 * 19 17 16 22 22 H 1.48507 * 109.47017 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47071 * 119.99986 * 21 19 17 24 24 H 1.48497 * 109.47406 * 240.00221 * 21 19 17 25 25 C 1.38237 * 119.94479 * 325.49481 * 12 11 9 26 26 H 1.08999 * 109.47114 * 299.99759 * 1 2 3 27 27 H 1.09000 * 109.46869 * 60.00129 * 1 2 3 28 28 H 1.08999 * 109.47005 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47114 * 240.00241 * 2 1 3 30 30 H 1.09000 * 109.46869 * 119.99871 * 2 1 3 31 31 H 1.09008 * 109.46827 * 60.00175 * 3 2 1 32 32 H 1.08996 * 109.47314 * 300.00158 * 3 2 1 33 33 H 0.96689 * 114.00298 * 60.00340 * 6 4 3 34 34 H 1.09007 * 109.47114 * 300.00263 * 7 4 3 35 35 H 1.08999 * 109.47442 * 60.00218 * 7 4 3 36 36 H 0.97006 * 119.99477 * 359.97438 * 8 7 4 37 37 H 0.97006 * 119.99924 * 354.84572 * 11 9 8 38 38 H 1.08003 * 119.78881 * 359.97438 * 13 12 11 39 39 H 1.08002 * 119.83765 * 180.02562 * 14 13 12 40 40 H 1.08001 * 120.05756 * 179.97438 * 15 14 13 41 41 H 0.97005 * 120.00294 * 179.97438 * 20 19 17 42 42 H 1.07993 * 120.16254 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 8 4.0468 0.8730 -1.2203 7 6 4.0799 2.8796 0.1264 8 7 5.5449 2.8797 0.1264 9 6 6.2187 4.0425 0.2277 10 8 5.6108 5.0914 0.3195 11 7 7.5665 4.0425 0.2282 12 6 8.2663 5.2545 0.2245 13 6 9.4778 5.3600 0.9036 14 6 10.1783 6.5547 0.9069 15 6 9.6844 7.6520 0.2378 16 6 8.4615 7.5603 -0.4527 17 6 7.9475 8.6830 -1.1418 18 1 6.8853 8.7695 -1.3167 19 6 8.8152 9.6821 -1.5968 20 7 10.0982 9.4429 -1.6871 21 14 8.1415 11.3574 -2.0754 22 1 6.6691 11.3722 -1.8829 23 1 8.7622 12.4025 -1.2224 24 1 8.4577 11.6294 -3.5005 25 6 7.7567 6.3434 -0.4578 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.7618 1.3474 -2.0132 34 1 3.7169 3.4690 -0.7156 35 1 3.7163 3.3140 1.0576 36 1 6.0300 2.0428 0.0535 37 1 8.0515 3.2024 0.2312 38 1 9.8731 4.5048 1.4317 39 1 11.1171 6.6257 1.4363 40 1 10.2340 8.5816 0.2436 41 1 10.6997 10.1353 -2.0029 42 1 6.8198 6.2613 -0.9886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455927261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:05 Heat of formation + Delta-G solvation = -78.008182 kcal Electronic energy + Delta-G solvation = -22483.663826 eV Core-core repulsion = 19041.699266 eV Total energy + Delta-G solvation = -3441.964560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.96202 -38.47436 -37.17872 -34.56758 -34.41221 -34.03663 -32.94069 -30.19367 -29.75771 -28.01662 -26.02038 -25.21498 -22.45791 -21.74159 -21.33380 -20.77958 -19.93889 -17.98907 -17.67954 -16.74932 -16.53216 -15.61464 -15.32495 -15.06934 -14.62272 -14.51500 -14.46955 -14.23478 -13.80133 -13.49840 -13.11024 -12.86330 -12.63380 -12.21653 -12.10819 -12.05144 -11.63427 -11.59487 -11.15264 -11.09988 -11.07910 -10.99709 -10.86618 -10.41086 -10.28000 -10.14061 -9.65304 -9.44729 -9.08061 -8.96238 -8.86947 -7.38527 -6.83172 -6.65151 -4.27940 2.76646 2.90039 3.07979 3.12858 3.19938 3.25253 3.76589 4.00657 4.07318 4.31726 4.52935 4.62140 4.70854 4.72754 4.90535 4.92769 5.20645 5.28412 5.47584 5.50468 5.61123 5.70009 5.75150 5.78633 5.93957 5.98464 6.29441 6.45780 6.58762 6.84782 6.86303 7.10151 7.14823 7.30162 7.32229 7.41708 7.75076 7.89626 8.05796 8.16953 8.30932 8.50334 8.72517 8.96013 9.03442 9.10902 10.27019 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.002874 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.772601 B = 9741.533040 C =10701.474004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.096 3.904 5 H 0.104 0.896 6 O -0.559 6.559 7 C 0.108 3.892 8 N -0.747 5.747 9 C 0.697 3.303 10 O -0.569 6.569 11 N -0.681 5.681 12 C 0.169 3.831 13 C -0.263 4.263 14 C -0.092 4.092 15 C -0.174 4.174 16 C 0.119 3.881 17 C -0.457 4.457 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.796 5.796 21 Si 0.907 3.093 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.209 4.209 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.378 0.622 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.394 0.606 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.278 0.722 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 -15.754 1.895 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.188 4.188 4 C 0.037 3.963 5 H 0.122 0.878 6 O -0.365 6.365 7 C -0.017 4.017 8 N -0.404 5.404 9 C 0.398 3.602 10 O -0.444 6.444 11 N -0.328 5.328 12 C 0.077 3.923 13 C -0.285 4.285 14 C -0.111 4.111 15 C -0.193 4.193 16 C 0.116 3.884 17 C -0.487 4.487 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.422 5.422 21 Si 0.732 3.268 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.201 1.201 25 C -0.231 4.231 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.225 0.775 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.227 0.773 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.089 0.911 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.701 -15.099 2.292 19.239 hybrid contribution 0.008 0.346 -0.594 0.688 sum -11.693 -14.753 1.698 18.901 Atomic orbital electron populations 1.21791 0.95898 1.01612 1.01834 1.21447 0.95592 0.96116 1.02592 1.22253 0.95011 0.98085 1.03466 1.22217 0.93161 0.92800 0.88168 0.87829 1.86560 1.77112 1.57094 1.15704 1.21853 0.79932 0.96868 1.03065 1.44967 1.06491 1.07988 1.80991 1.15979 0.81990 0.83977 0.78294 1.90974 1.67537 1.30054 1.55870 1.42579 1.04250 1.08681 1.77241 1.17230 0.92423 0.84490 0.98149 1.20015 0.98990 0.98623 1.10856 1.20446 0.97846 0.93302 0.99514 1.21331 0.99108 0.98119 1.00782 1.17501 0.90904 0.90984 0.88978 1.19600 0.95005 1.02617 1.31503 0.90393 1.25900 0.94493 1.00234 0.93567 1.69841 1.04018 1.34010 1.34352 0.86278 0.80565 0.81519 0.78451 1.18390 1.19753 1.20080 1.20993 1.03130 0.92661 1.06317 0.92769 0.92741 0.92774 0.91301 0.92053 0.90585 0.91134 0.77465 0.91413 0.90901 0.76949 0.77256 0.89376 0.89077 0.86349 0.91072 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.77 5.83 -26.73 -0.16 -0.93 16 3 C -0.15 -0.99 4.89 -26.73 -0.13 -1.12 16 4 C 0.10 0.76 3.05 -26.73 -0.08 0.67 16 5 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 6 O -0.56 -4.72 12.62 -35.23 -0.44 -5.16 16 7 C 0.11 1.19 5.34 -4.04 -0.02 1.17 16 8 N -0.75 -9.80 5.45 -65.22 -0.36 -10.16 16 9 C 0.70 13.06 8.29 -86.92 -0.72 12.34 16 10 O -0.57 -13.37 14.10 5.29 0.07 -13.30 16 11 N -0.68 -12.69 5.34 -14.27 -0.08 -12.77 16 12 C 0.17 3.97 6.25 -83.76 -0.52 3.45 16 13 C -0.26 -5.96 9.97 -39.10 -0.39 -6.35 16 14 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 15 C -0.17 -4.66 8.69 -38.84 -0.34 -5.00 16 16 C 0.12 3.37 5.57 -106.85 -0.59 2.77 16 17 C -0.46 -12.84 9.05 -37.74 -0.34 -13.18 16 18 H 0.08 2.17 7.90 -52.49 -0.41 1.75 16 19 C 0.07 1.96 5.16 -17.35 -0.09 1.87 16 20 N -0.80 -21.10 10.94 55.55 0.61 -20.50 16 21 Si 0.91 19.42 29.59 -169.99 -5.03 14.39 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.21 -5.61 8.39 -38.68 -0.32 -5.93 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.48 7.82 -51.93 -0.41 0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.38 2.33 9.04 45.56 0.41 2.74 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.40 4.21 8.37 -40.82 -0.34 3.87 16 37 H 0.39 5.73 8.84 -40.82 -0.36 5.37 16 38 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 39 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.12 3.25 6.17 -52.49 -0.32 2.93 16 41 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.11 2.94 6.49 -52.49 -0.34 2.60 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -32.79 352.08 -9.22 -42.01 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -5.56 Total: 13.56 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.74 Total: -13.39 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.18 Total: -43.42 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.37 Total: -18.46 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.79 -9.22 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455927261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.997 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds